samtools idxstats /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3562-aNSC_noCRE-CseDa01-SMF/L3562-aNSC_noCRE-CseDa01-SMF.1x300.trimmed.bwameth.mm10.bam > L3562-aNSC_noCRE-CseDa01-SMF.1x300.trimmed.bwameth.mm10.idxstats
samtools idxstats /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3563-aNSC_CRE-CseDa01-SMF/L3563-aNSC_CRE-CseDa01-SMF.1x300.trimmed.bwameth.mm10.bam > L3563-aNSC_CRE-CseDa01-SMF.1x300.trimmed.bwameth.mm10.idxstats
samtools idxstats /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3564-aNSC_EC-CseDa01-SMF/L3564-aNSC_EC-CseDa01-SMF.1x300.trimmed.bwameth.mm10.bam > L3564-aNSC_EC-CseDa01-SMF.1x300.trimmed.bwameth.mm10.idxstats
samtools idxstats /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3565-HEC-CseDa01-SMF/L3565-HEC-CseDa01-SMF.1x300.trimmed.bwameth.hg38.bam > L3565-HEC-CseDa01-SMF.1x300.trimmed.bwameth.hg38.idxstats
samtools idxstats /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3566-Hpos-CseDa01-SMF/L3566-Hpos-CseDa01-SMF.1x300.trimmed.bwameth.hg38.bam > L3566-Hpos-CseDa01-SMF.1x300.trimmed.bwameth.hg38.idxstats
samtools idxstats /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3567-COLO320_DNN-CseDa01-SMF/L3567-COLO320_DNN-CseDa01-SMF.1x300.trimmed.bwameth.hg38.bam > L3567-COLO320_DNN-CseDa01-SMF.1x300.trimmed.bwameth.hg38.idxstats
samtools idxstats /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3568-COLO320_HSR-CseDa01-SMF/L3568-COLO320_HSR-CseDa01-SMF.1x300.trimmed.bwameth.hg38.bam > L3568-COLO320_HSR-CseDa01-SMF.1x300.trimmed.bwameth.hg38.idxstats
samtools idxstats /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-KAS/L3481-CRE-rep1/L3481-CRE-rep1.mm10.2x36mers.unique.dedup.bam > L3481-CRE-rep1.mm10.2x36mers.unique.dedup.idxstats
samtools idxstats /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-KAS/L3482-CRE-rep2/L3482-CRE-rep2.mm10.2x36mers.unique.dedup.bam > L3482-CRE-rep2.mm10.2x36mers.unique.dedup.idxstats
samtools idxstats /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-KAS/L3483-noCRE-rep1/L3483-noCRE-rep1.mm10.2x36mers.unique.dedup.bam > L3483-noCRE-rep1.mm10.2x36mers.unique.dedup.idxstats
samtools idxstats /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-KAS/L3484-noCRE-rep2/L3484-noCRE-rep2.mm10.2x36mers.unique.dedup.bam > L3484-noCRE-rep2.mm10.2x36mers.unique.dedup.idxstats
samtools idxstats /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-KAS/L3485-EC-rep1/L3485-EC-rep1.mm10.2x36mers.unique.dedup.bam > L3485-EC-rep1.mm10.2x36mers.unique.dedup.idxstats
samtools idxstats /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-KAS/L3486-EC-rep2/L3486-EC-rep2.mm10.2x36mers.unique.dedup.bam > L3486-EC-rep2.mm10.2x36mers.unique.dedup.idxstats
samtools idxstats /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-KAS/L3489-hInv-rep1/L3489-hInv-rep1.hg38-male.2x36mers.unique.dedup.bam > L3489-hInv-rep1.hg38-male.2x36mers.unique.dedup.idxstats
samtools idxstats /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-KAS/L3548-aNSC_noCRE-KAS-rep1/L3548-aNSC_noCRE-KAS-rep1.2x36mers.mm10.unique.dedup.bam > L3548-aNSC_noCRE-KAS-rep1.2x36mers.mm10.unique.dedup.idxstats
samtools idxstats /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-KAS/L3549-aNSC_noCRE-KAS-rep2/L3549-aNSC_noCRE-KAS-rep2.2x36mers.mm10.unique.dedup.bam > L3549-aNSC_noCRE-KAS-rep2.2x36mers.mm10.unique.dedup.idxstats
samtools idxstats /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-KAS/L3550-aNSC_CRE-KAS-rep1/L3550-aNSC_CRE-KAS-rep1.2x36mers.mm10.unique.dedup.bam > L3550-aNSC_CRE-KAS-rep1.2x36mers.mm10.unique.dedup.idxstats
samtools idxstats /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-KAS/L3552-aNSC_EC-KAS-rep1/L3552-aNSC_EC-KAS-rep1.2x36mers.mm10.unique.dedup.bam > L3552-aNSC_EC-KAS-rep1.2x36mers.mm10.unique.dedup.idxstats
samtools idxstats /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-KAS/L3553-aNSC_EC-KAS-rep2/L3553-aNSC_EC-KAS-rep2.2x36mers.mm10.unique.dedup.bam > L3553-aNSC_EC-KAS-rep2.2x36mers.mm10.unique.dedup.idxstats
samtools idxstats /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-KAS/L3554-HEC-KAS-rep1/L3554-HEC-KAS-rep1.2x36mers.hg38.unique.dedup.bam > L3554-HEC-KAS-rep1.2x36mers.hg38.unique.dedup.idxstats
samtools idxstats /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-KAS/L3555-HEC-KAS-rep2/L3555-HEC-KAS-rep2.2x36mers.hg38.unique.dedup.bam > L3555-HEC-KAS-rep2.2x36mers.hg38.unique.dedup.idxstats
samtools idxstats /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-KAS/L3556-Hpos-KAS-rep1/L3556-Hpos-KAS-rep1.2x36mers.hg38.unique.dedup.bam > L3556-Hpos-KAS-rep1.2x36mers.hg38.unique.dedup.idxstats
samtools idxstats /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-KAS/L3557-Hpos-KAS-rep2/L3557-Hpos-KAS-rep2.2x36mers.hg38.unique.dedup.bam > L3557-Hpos-KAS-rep2.2x36mers.hg38.unique.dedup.idxstats
samtools idxstats /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-KAS/L3558-COLO320_DNN-KAS-rep1/L3558-COLO320_DNN-KAS-rep1.2x36mers.hg38.unique.dedup.bam > L3558-COLO320_DNN-KAS-rep1.2x36mers.hg38.unique.dedup.idxstats
samtools idxstats /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-KAS/L3559-COLO320_DNN-KAS-rep2/L3559-COLO320_DNN-KAS-rep2.2x36mers.hg38.unique.dedup.bam > L3559-COLO320_DNN-KAS-rep2.2x36mers.hg38.unique.dedup.idxstats
samtools idxstats /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-KAS/L3560-COLO320_HSR-KAS-rep1/L3560-COLO320_HSR-KAS-rep1.2x36mers.hg38.unique.dedup.bam > L3560-COLO320_HSR-KAS-rep1.2x36mers.hg38.unique.dedup.idxstats
samtools idxstats /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-KAS/L3561-COLO320_HSR-KAS-rep2/L3561-COLO320_HSR-KAS-rep2.2x36mers.hg38.unique.dedup.bam > L3561-COLO320_HSR-KAS-rep2.2x36mers.hg38.unique.dedup.idxstats