java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.0.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.0.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.1.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.1.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.10.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.10.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.11.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.11.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.12.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.12.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.13.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.13.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.14.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.14.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.15.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.15.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.16.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.16.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.17.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.17.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.18.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.18.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.19.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.19.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.2.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.2.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.20.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.20.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.21.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.21.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.22.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.22.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.23.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.23.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.24.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.24.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.25.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.25.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.26.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.26.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.27.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.27.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.28.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.28.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.29.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.29.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.3.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.3.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.30.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.30.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.31.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.31.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.32.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.32.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.33.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.33.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.34.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.34.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.35.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.35.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.36.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.36.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.37.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.37.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.38.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.38.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.39.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.39.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.4.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.4.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.40.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.40.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.41.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.41.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.42.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.42.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.43.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.43.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.44.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.44.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.45.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.45.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.46.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.46.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.47.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.47.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.48.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.48.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.49.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.49.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.5.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.5.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.50.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.50.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.51.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.51.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.52.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.52.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.53.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.53.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.54.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.54.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.55.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.55.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.6.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.6.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.7.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.7.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.8.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.8.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.9.gz L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.9.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.0.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.0.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.1.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.1.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.10.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.10.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.11.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.11.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.12.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.12.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.13.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.13.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.14.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.14.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.15.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.15.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.16.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.16.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.17.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.17.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.18.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.18.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.19.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.19.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.2.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.2.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.20.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.20.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.21.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.21.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.22.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.22.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.23.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.23.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.24.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.24.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.25.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.25.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.26.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.26.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.27.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.27.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.28.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.28.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.29.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.29.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.3.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.3.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.30.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.30.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.31.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.31.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.32.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.32.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.33.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.33.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.34.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.34.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.35.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.35.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.36.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.36.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.37.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.37.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.38.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.38.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.39.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.39.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.4.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.4.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.40.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.40.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.41.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.41.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.42.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.42.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.43.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.43.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.44.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.44.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.45.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.45.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.46.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.46.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.47.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.47.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.48.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.48.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.49.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.49.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.5.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.5.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.50.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.50.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.51.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.51.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.52.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.52.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.53.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.53.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.54.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.54.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.55.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.55.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.56.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.56.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.57.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.57.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.58.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.58.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.59.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.59.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.6.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.6.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.60.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.60.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.61.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.61.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.62.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.62.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.63.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.63.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.64.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.64.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.65.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.65.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.66.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.66.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.67.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.67.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.68.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.68.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.69.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.69.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.7.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.7.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.70.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.70.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.71.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.71.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.72.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.72.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.73.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.73.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.74.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.74.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.75.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.75.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.76.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.76.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.77.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.77.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.78.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.78.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.79.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.79.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.8.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.8.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.80.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.80.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.81.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.81.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.82.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.82.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.83.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.83.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.84.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.84.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.85.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.85.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.86.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.86.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.87.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.87.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.88.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.88.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.89.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.89.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.9.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.9.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.90.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.90.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.91.gz L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.91.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.0.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.0.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.1.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.1.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.10.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.10.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.11.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.11.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.12.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.12.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.13.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.13.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.14.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.14.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.15.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.15.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.16.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.16.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.17.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.17.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.18.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.18.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.19.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.19.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.2.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.2.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.20.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.20.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.21.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.21.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.22.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.22.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.23.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.23.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.24.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.24.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.25.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.25.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.26.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.26.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.27.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.27.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.28.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.28.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.29.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.29.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.3.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.3.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.30.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.30.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.31.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.31.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.32.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.32.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.33.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.33.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.34.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.34.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.35.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.35.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.36.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.36.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.37.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.37.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.38.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.38.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.39.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.39.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.4.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.4.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.40.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.40.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.41.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.41.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.42.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.42.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.43.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.43.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.44.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.44.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.45.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.45.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.46.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.46.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.47.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.47.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.48.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.48.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.49.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.49.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.5.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.5.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.50.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.50.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.51.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.51.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.52.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.52.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.53.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.53.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.54.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.54.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.55.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.55.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.56.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.56.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.57.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.57.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.58.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.58.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.59.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.59.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.6.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.6.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.60.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.60.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.61.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.61.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.62.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.62.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.63.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.63.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.64.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.64.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.65.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.65.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.66.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.66.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.67.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.67.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.68.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.68.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.69.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.69.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.7.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.7.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.70.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.70.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.71.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.71.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.72.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.72.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.73.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.73.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.74.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.74.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.75.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.75.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.76.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.76.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.77.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.77.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.78.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.78.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.79.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.79.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.8.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.8.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.80.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.80.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.81.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.81.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.82.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.82.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.83.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.83.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.84.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.84.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.85.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.85.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.86.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.86.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.87.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.87.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.88.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.88.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.89.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.89.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.9.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.9.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.90.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.90.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.91.gz L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.91.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.0.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.0.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.1.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.1.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.10.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.10.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.11.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.11.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.12.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.12.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.13.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.13.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.14.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.14.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.15.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.15.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.16.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.16.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.17.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.17.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.18.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.18.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.19.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.19.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.2.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.2.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.20.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.20.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.21.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.21.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.22.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.22.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.23.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.23.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.24.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.24.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.25.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.25.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.26.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.26.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.27.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.27.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.28.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.28.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.29.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.29.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.3.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.3.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.30.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.30.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.31.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.31.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.32.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.32.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.33.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.33.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.34.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.34.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.35.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.35.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.36.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.36.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.37.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.37.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.38.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.38.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.39.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.39.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.4.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.4.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.40.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.40.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.41.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.41.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.42.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.42.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.43.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.43.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.44.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.44.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.45.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.45.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.46.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.46.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.47.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.47.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.48.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.48.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.49.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.49.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.5.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.5.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.50.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.50.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.51.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.51.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.52.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.52.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.53.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.53.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.54.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.54.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.55.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.55.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.56.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.56.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.57.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.57.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.58.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.58.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.59.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.59.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.6.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.6.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.60.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.60.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.61.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.61.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.62.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.62.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.63.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.63.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.64.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.64.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.65.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.65.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.66.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.66.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.67.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.67.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.68.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.68.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.69.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.69.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.7.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.7.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.70.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.70.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.71.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.71.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.72.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.72.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.73.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.73.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.74.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.74.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.75.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.75.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.76.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.76.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.77.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.77.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.78.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.78.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.79.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.79.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.8.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.8.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.80.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.80.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.81.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.81.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.82.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.82.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.83.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.83.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.84.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.84.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.85.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.85.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.86.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.86.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.87.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.87.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.88.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.88.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.89.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.89.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.9.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.9.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.90.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.90.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.91.gz L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.fastq.chunks.91.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.0.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.0.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.1.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.1.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.10.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.10.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.11.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.11.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.12.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.12.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.13.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.13.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.14.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.14.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.15.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.15.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.16.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.16.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.17.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.17.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.18.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.18.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.19.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.19.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.2.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.2.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.20.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.20.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.21.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.21.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.22.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.22.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.23.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.23.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.24.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.24.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.25.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.25.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.26.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.26.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.27.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.27.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.28.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.28.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.29.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.29.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.3.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.3.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.30.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.30.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.31.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.31.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.32.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.32.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.33.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.33.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.34.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.34.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.35.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.35.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.36.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.36.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.37.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.37.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.38.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.38.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.39.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.39.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.4.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.4.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.40.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.40.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.41.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.41.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.42.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.42.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.43.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.43.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.44.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.44.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.45.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.45.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.46.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.46.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.47.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.47.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.48.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.48.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.49.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.49.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.5.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.5.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.50.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.50.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.51.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.51.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.52.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.52.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.53.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.53.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.54.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.54.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.55.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.55.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.56.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.56.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.57.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.57.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.58.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.58.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.59.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.59.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.6.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.6.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.60.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.60.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.61.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.61.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.62.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.62.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.63.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.63.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.64.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.64.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.65.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.65.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.66.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.66.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.67.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.67.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.68.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.68.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.69.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.69.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.7.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.7.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.70.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.70.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.71.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.71.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.72.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.72.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.73.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.73.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.74.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.74.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.75.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.75.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.76.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.76.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.77.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.77.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.78.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.78.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.79.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.79.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.8.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.8.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.80.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.80.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.81.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.81.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.82.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.82.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.83.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.83.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.84.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.84.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.85.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.85.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.86.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.86.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.87.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.87.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.88.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.88.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.89.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.89.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.9.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.9.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.90.gz L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.90.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.0.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.0.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.1.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.1.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.10.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.10.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.11.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.11.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.12.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.12.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.13.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.13.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.14.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.14.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.15.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.15.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.16.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.16.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.17.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.17.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.18.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.18.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.19.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.19.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.2.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.2.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.20.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.20.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.21.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.21.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.22.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.22.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.23.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.23.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.24.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.24.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.25.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.25.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.26.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.26.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.27.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.27.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.28.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.28.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.29.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.29.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.3.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.3.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.30.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.30.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.31.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.31.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.32.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.32.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.33.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.33.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.34.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.34.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.35.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.35.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.36.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.36.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.37.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.37.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.38.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.38.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.39.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.39.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.4.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.4.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.40.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.40.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.41.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.41.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.42.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.42.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.43.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.43.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.44.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.44.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.45.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.45.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.46.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.46.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.47.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.47.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.48.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.48.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.49.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.49.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.5.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.5.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.50.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.50.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.51.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.51.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.52.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.52.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.53.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.53.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.54.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.54.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.55.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.55.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.56.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.56.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.57.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.57.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.58.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.58.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.59.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.59.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.6.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.6.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.60.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.60.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.61.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.61.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.62.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.62.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.63.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.63.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.64.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.64.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.65.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.65.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.66.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.66.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.67.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.67.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.68.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.68.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.69.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.69.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.7.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.7.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.70.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.70.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.71.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.71.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.72.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.72.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.73.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.73.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.74.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.74.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.75.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.75.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.76.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.76.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.77.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.77.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.8.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.8.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.9.gz L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.9.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.0.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.0.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.1.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.1.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.10.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.10.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.11.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.11.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.12.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.12.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.13.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.13.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.14.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.14.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.15.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.15.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.16.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.16.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.17.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.17.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.18.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.18.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.19.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.19.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.2.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.2.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.20.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.20.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.21.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.21.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.22.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.22.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.23.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.23.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.24.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.24.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.25.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.25.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.26.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.26.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.27.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.27.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.28.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.28.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.29.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.29.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.3.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.3.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.30.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.30.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.31.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.31.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.32.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.32.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.33.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.33.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.34.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.34.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.35.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.35.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.36.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.36.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.37.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.37.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.38.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.38.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.39.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.39.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.4.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.4.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.40.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.40.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.41.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.41.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.42.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.42.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.43.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.43.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.44.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.44.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.45.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.45.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.46.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.46.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.47.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.47.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.48.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.48.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.49.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.49.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.5.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.5.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.50.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.50.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.51.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.51.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.52.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.52.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.53.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.53.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.54.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.54.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.55.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.55.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.56.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.56.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.57.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.57.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.58.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.58.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.59.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.59.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.6.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.6.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.60.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.60.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.61.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.61.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.62.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.62.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.63.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.63.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.64.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.64.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.65.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.65.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.66.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.66.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.67.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.67.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.68.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.68.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.69.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.69.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.7.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.7.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.70.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.70.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.71.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.71.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.72.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.72.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.73.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.73.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.74.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.74.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.75.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.75.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.76.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.76.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.8.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.8.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.9.gz L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.9.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.0.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.0.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.1.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.1.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.10.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.10.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.11.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.11.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.12.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.12.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.13.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.13.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.14.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.14.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.15.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.15.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.16.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.16.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.17.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.17.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.18.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.18.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.19.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.19.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.2.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.2.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.20.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.20.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.21.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.21.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.22.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.22.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.23.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.23.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.24.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.24.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.25.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.25.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.26.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.26.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.27.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.27.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.28.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.28.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.29.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.29.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.3.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.3.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.30.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.30.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.31.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.31.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.32.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.32.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.33.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.33.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.34.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.34.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.35.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.35.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.36.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.36.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.37.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.37.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.38.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.38.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.39.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.39.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.4.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.4.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.40.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.40.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.41.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.41.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.42.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.42.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.43.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.43.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.44.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.44.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.45.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.45.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.46.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.46.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.47.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.47.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.48.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.48.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.49.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.49.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.5.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.5.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.50.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.50.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.51.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.51.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.52.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.52.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.53.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.53.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.54.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.54.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.55.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.55.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.56.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.56.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.57.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.57.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.58.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.58.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.59.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.59.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.6.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.6.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.60.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.60.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.61.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.61.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.62.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.62.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.63.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.63.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.64.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.64.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.65.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.65.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.66.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.66.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.67.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.67.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.68.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.68.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.69.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.69.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.7.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.7.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.70.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.70.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.71.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.71.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.72.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.72.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.73.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.73.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.74.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.74.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.75.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.75.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.76.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.76.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.77.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.77.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.78.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.78.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.79.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.79.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.8.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.8.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.80.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.80.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.81.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.81.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.82.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.82.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.83.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.83.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.84.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.84.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.85.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.85.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.86.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.86.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.87.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.87.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.88.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.88.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.89.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.89.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 & 
java -jar /oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/trimmomatic-0.36.jar SE L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.9.gz L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.fastq.chunks.9.trimmed.fastq.gz ILLUMINACLIP:/oak/stanford/groups/akundaje/marinovg/programs/Trimmomatic-0.36/adapters/adapters.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 &