python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF3-vs-GM12878-ATF3-ENCFF126EBD-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.ATF3 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF7-vs-GM12878-ATF7-ENCFF467OPR-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.ATF7 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BACH1-vs-GM12878-BACH1-ENCFF784KPL-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.BACH1 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BATF-vs-GM12878-BATF-ENCFF523WHP-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.BATF &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BCL11A-vs-GM12878-BCL11A-ENCFF837XAJ-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.BCL11A &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BHLHE40-vs-GM12878-BHLHE40-ENCFF599AUJ-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.BHLHE40 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB-vs-GM12878-CEBPB-ENCFF156OCY-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.CEBPB &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPZ-vs-GM12878-CEBPZ-ENCFF056CTQ-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.CEBPZ &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREB1-vs-GM12878-CREB1-ENCFF552YPB-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.CREB1 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREM-vs-GM12878-CREM-ENCFF186QPL-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.CREM &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF017XLW-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.CTCF &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CUX1-vs-GM12878-CUX1-ENCFF781JQX-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.CUX1 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F4-vs-GM12878-E2F4-ENCFF629TVV-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.E2F4 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F8-vs-GM12878-E2F8-ENCFF898QHB-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.E2F8 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E4F1-vs-GM12878-E4F1-ENCFF673IUB-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.E4F1 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-GM12878-EBF1-ENCFF374TSP-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.EBF1 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EGR1-vs-GM12878-EGR1-ENCFF795QXQ-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.EGR1 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-GM12878-ELF1-ENCFF141OOG-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.ELF1 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELK1-vs-GM12878-ELK1-ENCFF463JDP-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.ELK1 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETS1-vs-GM12878-ETS1-ENCFF368SVW-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.ETS1 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6-vs-GM12878-ETV6-ENCFF342QUN-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.ETV6 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOXM1-vs-GM12878-FOXM1-ENCFF114JXB-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.FOXM1 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF574ZEF-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.GABPA &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF4-vs-GM12878-IRF4-ENCFF271OQQ-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.IRF4 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUNB-vs-GM12878-JUNB-ENCFF185LJE-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.JUNB &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND-vs-GM12878-JUND-ENCFF738BAA-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.JUND &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.KLF5-vs-GM12878-KLF5-ENCFF970MYF-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.KLF5 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAFK-vs-GM12878-MAFK-ENCFF043DXF-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.MAFK &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAX-vs-GM12878-MAX-ENCFF712UBB-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.MAX &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-GM12878-MAZ-ENCFF211WVL-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.MAZ &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2A-vs-GM12878-MEF2A-ENCFF775DWU-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.MEF2A &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2B-vs-GM12878-MEF2B-ENCFF780AUS-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.MEF2B &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2C-vs-GM12878-MEF2C-ENCFF264GAB-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.MEF2C &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MXI1-vs-GM12878-MXI1-ENCFF638YSV-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.MXI1 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYC-vs-GM12878-MYC-ENCFF765CKK-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.MYC &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC1-vs-GM12878-NFATC1-ENCFF565HHF-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.NFATC1 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC3-vs-GM12878-NFATC3-ENCFF623PTQ-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.NFATC3 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYA-vs-GM12878-NFYA-ENCFF339IEZ-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.NFYA &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYB-vs-GM12878-NFYB-ENCFF359ATR-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.NFYB &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NRF1-vs-GM12878-NRF1-ENCFF864EBU-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.NRF1 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-GM12878-PAX5-ENCFF220BTT-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.PAX5 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX8-vs-GM12878-PAX8-ENCFF630IVV-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.PAX8 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PBX3-vs-GM12878-PBX3-ENCFF236XCG-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.PBX3 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PKNOX1-vs-GM12878-PKNOX1-ENCFF205YWV-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.PKNOX1 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.POU2F2-vs-GM12878-POU2F2-ENCFF433TJX-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.POU2F2 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-GM12878-RELA-ENCFF074NZK-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.RELA &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELB-vs-GM12878-RELB-ENCFF505WBU-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.RELB &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RFX5-vs-GM12878-RFX5-ENCFF914AYR-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.RFX5 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RUNX3-vs-GM12878-RUNX3-ENCFF965LJE-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.RUNX3 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SIX5-vs-GM12878-SIX5-ENCFF175SNC-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.SIX5 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SMAD1-vs-GM12878-SMAD1-ENCFF510SOO-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.SMAD1 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SPI1-vs-GM12878-SPI1-ENCFF881ARS-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.SPI1 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF276KPQ-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.SRF &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF7-vs-GM12878-TCF7-ENCFF918LSK-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.TCF7 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF1-vs-GM12878-USF1-ENCFF688QPS-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.USF1 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF2-vs-GM12878-USF2-ENCFF666GZL-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.USF2 &
python /oak/stanford/groups/akundaje/marinovg/code/ChIP/motifPairs.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1-vs-GM12878-YY1-ENCFF247QYO-intersection1 2 5 10 DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz 2 5 10 15 75 motif-pairs.YY1 &