python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARID3A-vs-GM12878-ARID3A-ENCFF722RPZ.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ARID3A-vs-GM12878-ARID3A-ENCFF722RPZ.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARNT-vs-GM12878-ARNT-ENCFF320KXO.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ARNT-vs-GM12878-ARNT-ENCFF320KXO.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF092GMD.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF092GMD.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF527XHG.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF527XHG.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF549FQE.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF549FQE.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF3-vs-GM12878-ATF3-ENCFF126EBD.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ATF3-vs-GM12878-ATF3-ENCFF126EBD.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF7-vs-GM12878-ATF7-ENCFF467OPR.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ATF7-vs-GM12878-ATF7-ENCFF467OPR.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BACH1-vs-GM12878-BACH1-ENCFF784KPL.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BACH1-vs-GM12878-BACH1-ENCFF784KPL.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BATF-vs-GM12878-BATF-ENCFF523WHP.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BATF-vs-GM12878-BATF-ENCFF523WHP.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BCL11A-vs-GM12878-BCL11A-ENCFF837XAJ.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BCL11A-vs-GM12878-BCL11A-ENCFF837XAJ.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BHLHE40-vs-GM12878-BHLHE40-ENCFF599AUJ.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BHLHE40-vs-GM12878-BHLHE40-ENCFF599AUJ.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BHLHE40-vs-GM12878-BHLHE40-ENCFF620MJF.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BHLHE40-vs-GM12878-BHLHE40-ENCFF620MJF.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CBFB-vs-GM12878-CBFB-ENCFF514WCR.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CBFB-vs-GM12878-CBFB-ENCFF514WCR.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB-vs-GM12878-CEBPB-ENCFF156OCY.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPB-vs-GM12878-CEBPB-ENCFF156OCY.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB-vs-GM12878-CEBPB-ENCFF370CBN.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPB-vs-GM12878-CEBPB-ENCFF370CBN.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPZ-vs-GM12878-CEBPZ-ENCFF056CTQ.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPZ-vs-GM12878-CEBPZ-ENCFF056CTQ.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREB1-vs-GM12878-CREB1-ENCFF552YPB.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CREB1-vs-GM12878-CREB1-ENCFF552YPB.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREM-vs-GM12878-CREM-ENCFF186QPL.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CREM-vs-GM12878-CREM-ENCFF186QPL.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF017XLW.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF017XLW.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF258AFQ.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF258AFQ.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF592UDD.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF592UDD.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF796WRU.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF796WRU.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CUX1-vs-GM12878-CUX1-ENCFF781JQX.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CUX1-vs-GM12878-CUX1-ENCFF781JQX.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F4-vs-GM12878-E2F4-ENCFF629TVV.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E2F4-vs-GM12878-E2F4-ENCFF629TVV.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F8-vs-GM12878-E2F8-ENCFF898QHB.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E2F8-vs-GM12878-E2F8-ENCFF898QHB.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E4F1-vs-GM12878-E4F1-ENCFF673IUB.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E4F1-vs-GM12878-E4F1-ENCFF673IUB.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-GM12878-EBF1-ENCFF374TSP.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EBF1-vs-GM12878-EBF1-ENCFF374TSP.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-GM12878-EBF1-ENCFF450YTC.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EBF1-vs-GM12878-EBF1-ENCFF450YTC.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EGR1-vs-GM12878-EGR1-ENCFF795QXQ.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EGR1-vs-GM12878-EGR1-ENCFF795QXQ.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-GM12878-ELF1-ENCFF141OOG.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELF1-vs-GM12878-ELF1-ENCFF141OOG.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-GM12878-ELF1-ENCFF349IFX.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELF1-vs-GM12878-ELF1-ENCFF349IFX.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELK1-vs-GM12878-ELK1-ENCFF463JDP.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELK1-vs-GM12878-ELK1-ENCFF463JDP.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ESRRA-vs-GM12878-ESRRA-ENCFF762CTH.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ESRRA-vs-GM12878-ESRRA-ENCFF762CTH.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETS1-vs-GM12878-ETS1-ENCFF368SVW.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETS1-vs-GM12878-ETS1-ENCFF368SVW.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6-vs-GM12878-ETV6-ENCFF342QUN.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETV6-vs-GM12878-ETV6-ENCFF342QUN.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6-vs-GM12878-ETV6-ENCFF655IXH.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETV6-vs-GM12878-ETV6-ENCFF655IXH.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOS-vs-GM12878-FOS-ENCFF949TIZ.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.FOS-vs-GM12878-FOS-ENCFF949TIZ.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOXM1-vs-GM12878-FOXM1-ENCFF114JXB.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.FOXM1-vs-GM12878-FOXM1-ENCFF114JXB.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF574ZEF.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF574ZEF.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF617GBZ.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF617GBZ.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF771RXX.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF771RXX.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HSF1-vs-GM12878-HSF1-ENCFF405WKK.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.HSF1-vs-GM12878-HSF1-ENCFF405WKK.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF448JWW.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF448JWW.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF468AOG.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF468AOG.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF786WSB.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF786WSB.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF2-vs-GM12878-IKZF2-ENCFF578YIW.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF2-vs-GM12878-IKZF2-ENCFF578YIW.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF2-vs-GM12878-IKZF2-ENCFF615CIJ.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF2-vs-GM12878-IKZF2-ENCFF615CIJ.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3-vs-GM12878-IRF3-ENCFF679UBZ.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF3-vs-GM12878-IRF3-ENCFF679UBZ.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3-vs-GM12878-IRF3-ENCFF692CUY.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF3-vs-GM12878-IRF3-ENCFF692CUY.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF4-vs-GM12878-IRF4-ENCFF271OQQ.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF4-vs-GM12878-IRF4-ENCFF271OQQ.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF5-vs-GM12878-IRF5-ENCFF095VAP.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF5-vs-GM12878-IRF5-ENCFF095VAP.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUNB-vs-GM12878-JUNB-ENCFF185LJE.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUNB-vs-GM12878-JUNB-ENCFF185LJE.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND-vs-GM12878-JUND-ENCFF738BAA.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUND-vs-GM12878-JUND-ENCFF738BAA.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND-vs-GM12878-JUND-ENCFF825BIG.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUND-vs-GM12878-JUND-ENCFF825BIG.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.KLF5-vs-GM12878-KLF5-ENCFF970MYF.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.KLF5-vs-GM12878-KLF5-ENCFF970MYF.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAFK-vs-GM12878-MAFK-ENCFF043DXF.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAFK-vs-GM12878-MAFK-ENCFF043DXF.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAX-vs-GM12878-MAX-ENCFF712UBB.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAX-vs-GM12878-MAX-ENCFF712UBB.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-GM12878-MAZ-ENCFF211WVL.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAZ-vs-GM12878-MAZ-ENCFF211WVL.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-GM12878-MAZ-ENCFF250FJC.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAZ-vs-GM12878-MAZ-ENCFF250FJC.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2A-vs-GM12878-MEF2A-ENCFF775DWU.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2A-vs-GM12878-MEF2A-ENCFF775DWU.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2B-vs-GM12878-MEF2B-ENCFF780AUS.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2B-vs-GM12878-MEF2B-ENCFF780AUS.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2C-vs-GM12878-MEF2C-ENCFF264GAB.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2C-vs-GM12878-MEF2C-ENCFF264GAB.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MXI1-vs-GM12878-MXI1-ENCFF638YSV.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MXI1-vs-GM12878-MXI1-ENCFF638YSV.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYB-vs-GM12878-MYB-ENCFF208DZU.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MYB-vs-GM12878-MYB-ENCFF208DZU.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYC-vs-GM12878-MYC-ENCFF765CKK.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MYC-vs-GM12878-MYC-ENCFF765CKK.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC1-vs-GM12878-NFATC1-ENCFF565HHF.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFATC1-vs-GM12878-NFATC1-ENCFF565HHF.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC3-vs-GM12878-NFATC3-ENCFF623PTQ.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFATC3-vs-GM12878-NFATC3-ENCFF623PTQ.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFE2-vs-GM12878-NFE2-ENCFF729STF.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFE2-vs-GM12878-NFE2-ENCFF729STF.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFE2-vs-GM12878-NFE2-ENCFF766ERZ.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFE2-vs-GM12878-NFE2-ENCFF766ERZ.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYA-vs-GM12878-NFYA-ENCFF339IEZ.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFYA-vs-GM12878-NFYA-ENCFF339IEZ.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYB-vs-GM12878-NFYB-ENCFF359ATR.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFYB-vs-GM12878-NFYB-ENCFF359ATR.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C1-vs-GM12878-NR2C1-ENCFF271VCD.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2C1-vs-GM12878-NR2C1-ENCFF271VCD.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C2-vs-GM12878-NR2C2-ENCFF735IUU.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2C2-vs-GM12878-NR2C2-ENCFF735IUU.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2F1-vs-GM12878-NR2F1-ENCFF118UKC.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2F1-vs-GM12878-NR2F1-ENCFF118UKC.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NRF1-vs-GM12878-NRF1-ENCFF864EBU.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NRF1-vs-GM12878-NRF1-ENCFF864EBU.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-GM12878-PAX5-ENCFF220BTT.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX5-vs-GM12878-PAX5-ENCFF220BTT.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-GM12878-PAX5-ENCFF395KJU.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX5-vs-GM12878-PAX5-ENCFF395KJU.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX8-vs-GM12878-PAX8-ENCFF630IVV.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX8-vs-GM12878-PAX8-ENCFF630IVV.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PBX3-vs-GM12878-PBX3-ENCFF236XCG.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PBX3-vs-GM12878-PBX3-ENCFF236XCG.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PKNOX1-vs-GM12878-PKNOX1-ENCFF205YWV.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PKNOX1-vs-GM12878-PKNOX1-ENCFF205YWV.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.POU2F2-vs-GM12878-POU2F2-ENCFF433TJX.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.POU2F2-vs-GM12878-POU2F2-ENCFF433TJX.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-GM12878-RELA-ENCFF074NZK.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELA-vs-GM12878-RELA-ENCFF074NZK.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-GM12878-RELA-ENCFF218OPP.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELA-vs-GM12878-RELA-ENCFF218OPP.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELB-vs-GM12878-RELB-ENCFF505WBU.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELB-vs-GM12878-RELB-ENCFF505WBU.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-GM12878-REST-ENCFF348LKE.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.REST-vs-GM12878-REST-ENCFF348LKE.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-GM12878-REST-ENCFF428QEI.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.REST-vs-GM12878-REST-ENCFF428QEI.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RFX5-vs-GM12878-RFX5-ENCFF914AYR.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RFX5-vs-GM12878-RFX5-ENCFF914AYR.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RUNX3-vs-GM12878-RUNX3-ENCFF965LJE.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RUNX3-vs-GM12878-RUNX3-ENCFF965LJE.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RXRA-vs-GM12878-RXRA-ENCFF575ZLF.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RXRA-vs-GM12878-RXRA-ENCFF575ZLF.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SIX5-vs-GM12878-SIX5-ENCFF175SNC.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SIX5-vs-GM12878-SIX5-ENCFF175SNC.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SMAD1-vs-GM12878-SMAD1-ENCFF510SOO.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SMAD1-vs-GM12878-SMAD1-ENCFF510SOO.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SPI1-vs-GM12878-SPI1-ENCFF881ARS.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SPI1-vs-GM12878-SPI1-ENCFF881ARS.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF1-vs-GM12878-SREBF1-ENCFF729QOZ.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SREBF1-vs-GM12878-SREBF1-ENCFF729QOZ.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF2-vs-GM12878-SREBF2-ENCFF272RZS.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SREBF2-vs-GM12878-SREBF2-ENCFF272RZS.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF276KPQ.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF276KPQ.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF489QRS.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF489QRS.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF836NXG.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF836NXG.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-GM12878-STAT1-ENCFF780PWT.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT1-vs-GM12878-STAT1-ENCFF780PWT.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-GM12878-STAT1-ENCFF973ACG.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT1-vs-GM12878-STAT1-ENCFF973ACG.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT3-vs-GM12878-STAT3-ENCFF719YDJ.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT3-vs-GM12878-STAT3-ENCFF719YDJ.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT5A-vs-GM12878-STAT5A-ENCFF543CUS.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT5A-vs-GM12878-STAT5A-ENCFF543CUS.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBP-vs-GM12878-TBP-ENCFF863HTV.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TBP-vs-GM12878-TBP-ENCFF863HTV.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBX21-vs-GM12878-TBX21-ENCFF655AWD.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TBX21-vs-GM12878-TBX21-ENCFF655AWD.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-GM12878-TCF12-ENCFF342RNH.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF12-vs-GM12878-TCF12-ENCFF342RNH.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-GM12878-TCF12-ENCFF429FHY.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF12-vs-GM12878-TCF12-ENCFF429FHY.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF3-vs-GM12878-TCF3-ENCFF235NCI.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF3-vs-GM12878-TCF3-ENCFF235NCI.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF7-vs-GM12878-TCF7-ENCFF918LSK.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF7-vs-GM12878-TCF7-ENCFF918LSK.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF1-vs-GM12878-USF1-ENCFF688QPS.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.USF1-vs-GM12878-USF1-ENCFF688QPS.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF2-vs-GM12878-USF2-ENCFF666GZL.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.USF2-vs-GM12878-USF2-ENCFF666GZL.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YBX1-vs-GM12878-YBX1-ENCFF249ZOW.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YBX1-vs-GM12878-YBX1-ENCFF249ZOW.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1-vs-GM12878-YY1-ENCFF247QYO.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YY1-vs-GM12878-YY1-ENCFF247QYO.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1-vs-GM12878-YY1-ENCFF320PLB.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YY1-vs-GM12878-YY1-ENCFF320PLB.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBED1-vs-GM12878-ZBED1-ENCFF802ODC.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBED1-vs-GM12878-ZBED1-ENCFF802ODC.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33-vs-GM12878-ZBTB33-ENCFF099ANS.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB33-vs-GM12878-ZBTB33-ENCFF099ANS.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33-vs-GM12878-ZBTB33-ENCFF550LPG.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB33-vs-GM12878-ZBTB33-ENCFF550LPG.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB4-vs-GM12878-ZBTB4-ENCFF273OXB.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB4-vs-GM12878-ZBTB4-ENCFF273OXB.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZEB1-vs-GM12878-ZEB1-ENCFF363BVO.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZEB1-vs-GM12878-ZEB1-ENCFF363BVO.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF384-vs-GM12878-ZNF384-ENCFF990JXT.100radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZNF384-vs-GM12878-ZNF384-ENCFF990JXT.100radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARID3A-vs-GM12878-ARID3A-ENCFF722RPZ.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ARID3A-vs-GM12878-ARID3A-ENCFF722RPZ.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARNT-vs-GM12878-ARNT-ENCFF320KXO.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ARNT-vs-GM12878-ARNT-ENCFF320KXO.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF092GMD.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF092GMD.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF527XHG.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF527XHG.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF549FQE.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF549FQE.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF3-vs-GM12878-ATF3-ENCFF126EBD.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ATF3-vs-GM12878-ATF3-ENCFF126EBD.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF7-vs-GM12878-ATF7-ENCFF467OPR.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ATF7-vs-GM12878-ATF7-ENCFF467OPR.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BACH1-vs-GM12878-BACH1-ENCFF784KPL.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BACH1-vs-GM12878-BACH1-ENCFF784KPL.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BATF-vs-GM12878-BATF-ENCFF523WHP.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BATF-vs-GM12878-BATF-ENCFF523WHP.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BCL11A-vs-GM12878-BCL11A-ENCFF837XAJ.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BCL11A-vs-GM12878-BCL11A-ENCFF837XAJ.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BHLHE40-vs-GM12878-BHLHE40-ENCFF599AUJ.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BHLHE40-vs-GM12878-BHLHE40-ENCFF599AUJ.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BHLHE40-vs-GM12878-BHLHE40-ENCFF620MJF.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BHLHE40-vs-GM12878-BHLHE40-ENCFF620MJF.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CBFB-vs-GM12878-CBFB-ENCFF514WCR.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CBFB-vs-GM12878-CBFB-ENCFF514WCR.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB-vs-GM12878-CEBPB-ENCFF156OCY.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPB-vs-GM12878-CEBPB-ENCFF156OCY.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB-vs-GM12878-CEBPB-ENCFF370CBN.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPB-vs-GM12878-CEBPB-ENCFF370CBN.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPZ-vs-GM12878-CEBPZ-ENCFF056CTQ.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPZ-vs-GM12878-CEBPZ-ENCFF056CTQ.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREB1-vs-GM12878-CREB1-ENCFF552YPB.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CREB1-vs-GM12878-CREB1-ENCFF552YPB.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREM-vs-GM12878-CREM-ENCFF186QPL.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CREM-vs-GM12878-CREM-ENCFF186QPL.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF017XLW.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF017XLW.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF258AFQ.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF258AFQ.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF592UDD.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF592UDD.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF796WRU.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF796WRU.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CUX1-vs-GM12878-CUX1-ENCFF781JQX.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CUX1-vs-GM12878-CUX1-ENCFF781JQX.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F4-vs-GM12878-E2F4-ENCFF629TVV.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E2F4-vs-GM12878-E2F4-ENCFF629TVV.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F8-vs-GM12878-E2F8-ENCFF898QHB.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E2F8-vs-GM12878-E2F8-ENCFF898QHB.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E4F1-vs-GM12878-E4F1-ENCFF673IUB.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E4F1-vs-GM12878-E4F1-ENCFF673IUB.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-GM12878-EBF1-ENCFF374TSP.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EBF1-vs-GM12878-EBF1-ENCFF374TSP.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-GM12878-EBF1-ENCFF450YTC.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EBF1-vs-GM12878-EBF1-ENCFF450YTC.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EGR1-vs-GM12878-EGR1-ENCFF795QXQ.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EGR1-vs-GM12878-EGR1-ENCFF795QXQ.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-GM12878-ELF1-ENCFF141OOG.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELF1-vs-GM12878-ELF1-ENCFF141OOG.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-GM12878-ELF1-ENCFF349IFX.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELF1-vs-GM12878-ELF1-ENCFF349IFX.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELK1-vs-GM12878-ELK1-ENCFF463JDP.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELK1-vs-GM12878-ELK1-ENCFF463JDP.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ESRRA-vs-GM12878-ESRRA-ENCFF762CTH.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ESRRA-vs-GM12878-ESRRA-ENCFF762CTH.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETS1-vs-GM12878-ETS1-ENCFF368SVW.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETS1-vs-GM12878-ETS1-ENCFF368SVW.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6-vs-GM12878-ETV6-ENCFF342QUN.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETV6-vs-GM12878-ETV6-ENCFF342QUN.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6-vs-GM12878-ETV6-ENCFF655IXH.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETV6-vs-GM12878-ETV6-ENCFF655IXH.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOS-vs-GM12878-FOS-ENCFF949TIZ.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.FOS-vs-GM12878-FOS-ENCFF949TIZ.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOXM1-vs-GM12878-FOXM1-ENCFF114JXB.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.FOXM1-vs-GM12878-FOXM1-ENCFF114JXB.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF574ZEF.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF574ZEF.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF617GBZ.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF617GBZ.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF771RXX.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF771RXX.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HSF1-vs-GM12878-HSF1-ENCFF405WKK.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.HSF1-vs-GM12878-HSF1-ENCFF405WKK.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF448JWW.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF448JWW.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF468AOG.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF468AOG.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF786WSB.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF786WSB.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF2-vs-GM12878-IKZF2-ENCFF578YIW.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF2-vs-GM12878-IKZF2-ENCFF578YIW.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF2-vs-GM12878-IKZF2-ENCFF615CIJ.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF2-vs-GM12878-IKZF2-ENCFF615CIJ.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3-vs-GM12878-IRF3-ENCFF679UBZ.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF3-vs-GM12878-IRF3-ENCFF679UBZ.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3-vs-GM12878-IRF3-ENCFF692CUY.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF3-vs-GM12878-IRF3-ENCFF692CUY.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF4-vs-GM12878-IRF4-ENCFF271OQQ.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF4-vs-GM12878-IRF4-ENCFF271OQQ.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF5-vs-GM12878-IRF5-ENCFF095VAP.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF5-vs-GM12878-IRF5-ENCFF095VAP.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUNB-vs-GM12878-JUNB-ENCFF185LJE.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUNB-vs-GM12878-JUNB-ENCFF185LJE.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND-vs-GM12878-JUND-ENCFF738BAA.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUND-vs-GM12878-JUND-ENCFF738BAA.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND-vs-GM12878-JUND-ENCFF825BIG.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUND-vs-GM12878-JUND-ENCFF825BIG.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.KLF5-vs-GM12878-KLF5-ENCFF970MYF.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.KLF5-vs-GM12878-KLF5-ENCFF970MYF.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAFK-vs-GM12878-MAFK-ENCFF043DXF.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAFK-vs-GM12878-MAFK-ENCFF043DXF.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAX-vs-GM12878-MAX-ENCFF712UBB.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAX-vs-GM12878-MAX-ENCFF712UBB.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-GM12878-MAZ-ENCFF211WVL.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAZ-vs-GM12878-MAZ-ENCFF211WVL.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-GM12878-MAZ-ENCFF250FJC.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAZ-vs-GM12878-MAZ-ENCFF250FJC.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2A-vs-GM12878-MEF2A-ENCFF775DWU.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2A-vs-GM12878-MEF2A-ENCFF775DWU.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2B-vs-GM12878-MEF2B-ENCFF780AUS.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2B-vs-GM12878-MEF2B-ENCFF780AUS.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2C-vs-GM12878-MEF2C-ENCFF264GAB.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2C-vs-GM12878-MEF2C-ENCFF264GAB.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MXI1-vs-GM12878-MXI1-ENCFF638YSV.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MXI1-vs-GM12878-MXI1-ENCFF638YSV.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYB-vs-GM12878-MYB-ENCFF208DZU.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MYB-vs-GM12878-MYB-ENCFF208DZU.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYC-vs-GM12878-MYC-ENCFF765CKK.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MYC-vs-GM12878-MYC-ENCFF765CKK.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC1-vs-GM12878-NFATC1-ENCFF565HHF.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFATC1-vs-GM12878-NFATC1-ENCFF565HHF.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC3-vs-GM12878-NFATC3-ENCFF623PTQ.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFATC3-vs-GM12878-NFATC3-ENCFF623PTQ.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFE2-vs-GM12878-NFE2-ENCFF729STF.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFE2-vs-GM12878-NFE2-ENCFF729STF.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFE2-vs-GM12878-NFE2-ENCFF766ERZ.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFE2-vs-GM12878-NFE2-ENCFF766ERZ.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYA-vs-GM12878-NFYA-ENCFF339IEZ.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFYA-vs-GM12878-NFYA-ENCFF339IEZ.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYB-vs-GM12878-NFYB-ENCFF359ATR.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFYB-vs-GM12878-NFYB-ENCFF359ATR.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C1-vs-GM12878-NR2C1-ENCFF271VCD.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2C1-vs-GM12878-NR2C1-ENCFF271VCD.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C2-vs-GM12878-NR2C2-ENCFF735IUU.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2C2-vs-GM12878-NR2C2-ENCFF735IUU.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2F1-vs-GM12878-NR2F1-ENCFF118UKC.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2F1-vs-GM12878-NR2F1-ENCFF118UKC.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NRF1-vs-GM12878-NRF1-ENCFF864EBU.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NRF1-vs-GM12878-NRF1-ENCFF864EBU.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-GM12878-PAX5-ENCFF220BTT.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX5-vs-GM12878-PAX5-ENCFF220BTT.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-GM12878-PAX5-ENCFF395KJU.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX5-vs-GM12878-PAX5-ENCFF395KJU.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX8-vs-GM12878-PAX8-ENCFF630IVV.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX8-vs-GM12878-PAX8-ENCFF630IVV.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PBX3-vs-GM12878-PBX3-ENCFF236XCG.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PBX3-vs-GM12878-PBX3-ENCFF236XCG.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PKNOX1-vs-GM12878-PKNOX1-ENCFF205YWV.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PKNOX1-vs-GM12878-PKNOX1-ENCFF205YWV.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.POU2F2-vs-GM12878-POU2F2-ENCFF433TJX.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.POU2F2-vs-GM12878-POU2F2-ENCFF433TJX.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-GM12878-RELA-ENCFF074NZK.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELA-vs-GM12878-RELA-ENCFF074NZK.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-GM12878-RELA-ENCFF218OPP.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELA-vs-GM12878-RELA-ENCFF218OPP.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELB-vs-GM12878-RELB-ENCFF505WBU.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELB-vs-GM12878-RELB-ENCFF505WBU.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-GM12878-REST-ENCFF348LKE.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.REST-vs-GM12878-REST-ENCFF348LKE.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-GM12878-REST-ENCFF428QEI.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.REST-vs-GM12878-REST-ENCFF428QEI.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RFX5-vs-GM12878-RFX5-ENCFF914AYR.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RFX5-vs-GM12878-RFX5-ENCFF914AYR.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RUNX3-vs-GM12878-RUNX3-ENCFF965LJE.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RUNX3-vs-GM12878-RUNX3-ENCFF965LJE.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RXRA-vs-GM12878-RXRA-ENCFF575ZLF.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RXRA-vs-GM12878-RXRA-ENCFF575ZLF.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SIX5-vs-GM12878-SIX5-ENCFF175SNC.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SIX5-vs-GM12878-SIX5-ENCFF175SNC.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SMAD1-vs-GM12878-SMAD1-ENCFF510SOO.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SMAD1-vs-GM12878-SMAD1-ENCFF510SOO.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SPI1-vs-GM12878-SPI1-ENCFF881ARS.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SPI1-vs-GM12878-SPI1-ENCFF881ARS.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF1-vs-GM12878-SREBF1-ENCFF729QOZ.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SREBF1-vs-GM12878-SREBF1-ENCFF729QOZ.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF2-vs-GM12878-SREBF2-ENCFF272RZS.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SREBF2-vs-GM12878-SREBF2-ENCFF272RZS.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF276KPQ.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF276KPQ.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF489QRS.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF489QRS.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF836NXG.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF836NXG.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-GM12878-STAT1-ENCFF780PWT.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT1-vs-GM12878-STAT1-ENCFF780PWT.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-GM12878-STAT1-ENCFF973ACG.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT1-vs-GM12878-STAT1-ENCFF973ACG.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT3-vs-GM12878-STAT3-ENCFF719YDJ.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT3-vs-GM12878-STAT3-ENCFF719YDJ.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT5A-vs-GM12878-STAT5A-ENCFF543CUS.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT5A-vs-GM12878-STAT5A-ENCFF543CUS.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBP-vs-GM12878-TBP-ENCFF863HTV.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TBP-vs-GM12878-TBP-ENCFF863HTV.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBX21-vs-GM12878-TBX21-ENCFF655AWD.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TBX21-vs-GM12878-TBX21-ENCFF655AWD.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-GM12878-TCF12-ENCFF342RNH.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF12-vs-GM12878-TCF12-ENCFF342RNH.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-GM12878-TCF12-ENCFF429FHY.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF12-vs-GM12878-TCF12-ENCFF429FHY.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF3-vs-GM12878-TCF3-ENCFF235NCI.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF3-vs-GM12878-TCF3-ENCFF235NCI.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF7-vs-GM12878-TCF7-ENCFF918LSK.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF7-vs-GM12878-TCF7-ENCFF918LSK.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF1-vs-GM12878-USF1-ENCFF688QPS.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.USF1-vs-GM12878-USF1-ENCFF688QPS.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF2-vs-GM12878-USF2-ENCFF666GZL.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.USF2-vs-GM12878-USF2-ENCFF666GZL.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YBX1-vs-GM12878-YBX1-ENCFF249ZOW.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YBX1-vs-GM12878-YBX1-ENCFF249ZOW.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1-vs-GM12878-YY1-ENCFF247QYO.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YY1-vs-GM12878-YY1-ENCFF247QYO.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1-vs-GM12878-YY1-ENCFF320PLB.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YY1-vs-GM12878-YY1-ENCFF320PLB.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBED1-vs-GM12878-ZBED1-ENCFF802ODC.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBED1-vs-GM12878-ZBED1-ENCFF802ODC.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33-vs-GM12878-ZBTB33-ENCFF099ANS.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB33-vs-GM12878-ZBTB33-ENCFF099ANS.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33-vs-GM12878-ZBTB33-ENCFF550LPG.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB33-vs-GM12878-ZBTB33-ENCFF550LPG.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB4-vs-GM12878-ZBTB4-ENCFF273OXB.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB4-vs-GM12878-ZBTB4-ENCFF273OXB.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZEB1-vs-GM12878-ZEB1-ENCFF363BVO.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZEB1-vs-GM12878-ZEB1-ENCFF363BVO.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF384-vs-GM12878-ZNF384-ENCFF990JXT.50radius_split.Q1 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZNF384-vs-GM12878-ZNF384-ENCFF990JXT.50radius_split.Q1.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARID3A-vs-GM12878-ARID3A-ENCFF722RPZ.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ARID3A-vs-GM12878-ARID3A-ENCFF722RPZ.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARNT-vs-GM12878-ARNT-ENCFF320KXO.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ARNT-vs-GM12878-ARNT-ENCFF320KXO.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF092GMD.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF092GMD.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF527XHG.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF527XHG.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF549FQE.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF549FQE.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF3-vs-GM12878-ATF3-ENCFF126EBD.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ATF3-vs-GM12878-ATF3-ENCFF126EBD.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF7-vs-GM12878-ATF7-ENCFF467OPR.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ATF7-vs-GM12878-ATF7-ENCFF467OPR.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BACH1-vs-GM12878-BACH1-ENCFF784KPL.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BACH1-vs-GM12878-BACH1-ENCFF784KPL.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BATF-vs-GM12878-BATF-ENCFF523WHP.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BATF-vs-GM12878-BATF-ENCFF523WHP.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BCL11A-vs-GM12878-BCL11A-ENCFF837XAJ.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BCL11A-vs-GM12878-BCL11A-ENCFF837XAJ.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BHLHE40-vs-GM12878-BHLHE40-ENCFF599AUJ.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BHLHE40-vs-GM12878-BHLHE40-ENCFF599AUJ.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BHLHE40-vs-GM12878-BHLHE40-ENCFF620MJF.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BHLHE40-vs-GM12878-BHLHE40-ENCFF620MJF.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CBFB-vs-GM12878-CBFB-ENCFF514WCR.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CBFB-vs-GM12878-CBFB-ENCFF514WCR.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB-vs-GM12878-CEBPB-ENCFF156OCY.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPB-vs-GM12878-CEBPB-ENCFF156OCY.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB-vs-GM12878-CEBPB-ENCFF370CBN.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPB-vs-GM12878-CEBPB-ENCFF370CBN.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPZ-vs-GM12878-CEBPZ-ENCFF056CTQ.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPZ-vs-GM12878-CEBPZ-ENCFF056CTQ.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREB1-vs-GM12878-CREB1-ENCFF552YPB.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CREB1-vs-GM12878-CREB1-ENCFF552YPB.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREM-vs-GM12878-CREM-ENCFF186QPL.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CREM-vs-GM12878-CREM-ENCFF186QPL.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF017XLW.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF017XLW.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF258AFQ.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF258AFQ.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF592UDD.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF592UDD.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF796WRU.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF796WRU.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CUX1-vs-GM12878-CUX1-ENCFF781JQX.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CUX1-vs-GM12878-CUX1-ENCFF781JQX.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F4-vs-GM12878-E2F4-ENCFF629TVV.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E2F4-vs-GM12878-E2F4-ENCFF629TVV.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F8-vs-GM12878-E2F8-ENCFF898QHB.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E2F8-vs-GM12878-E2F8-ENCFF898QHB.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E4F1-vs-GM12878-E4F1-ENCFF673IUB.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E4F1-vs-GM12878-E4F1-ENCFF673IUB.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-GM12878-EBF1-ENCFF374TSP.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EBF1-vs-GM12878-EBF1-ENCFF374TSP.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-GM12878-EBF1-ENCFF450YTC.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EBF1-vs-GM12878-EBF1-ENCFF450YTC.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EGR1-vs-GM12878-EGR1-ENCFF795QXQ.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EGR1-vs-GM12878-EGR1-ENCFF795QXQ.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-GM12878-ELF1-ENCFF141OOG.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELF1-vs-GM12878-ELF1-ENCFF141OOG.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-GM12878-ELF1-ENCFF349IFX.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELF1-vs-GM12878-ELF1-ENCFF349IFX.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELK1-vs-GM12878-ELK1-ENCFF463JDP.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELK1-vs-GM12878-ELK1-ENCFF463JDP.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ESRRA-vs-GM12878-ESRRA-ENCFF762CTH.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ESRRA-vs-GM12878-ESRRA-ENCFF762CTH.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETS1-vs-GM12878-ETS1-ENCFF368SVW.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETS1-vs-GM12878-ETS1-ENCFF368SVW.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6-vs-GM12878-ETV6-ENCFF342QUN.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETV6-vs-GM12878-ETV6-ENCFF342QUN.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6-vs-GM12878-ETV6-ENCFF655IXH.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETV6-vs-GM12878-ETV6-ENCFF655IXH.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOS-vs-GM12878-FOS-ENCFF949TIZ.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.FOS-vs-GM12878-FOS-ENCFF949TIZ.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOXM1-vs-GM12878-FOXM1-ENCFF114JXB.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.FOXM1-vs-GM12878-FOXM1-ENCFF114JXB.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF574ZEF.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF574ZEF.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF617GBZ.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF617GBZ.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF771RXX.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF771RXX.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HSF1-vs-GM12878-HSF1-ENCFF405WKK.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.HSF1-vs-GM12878-HSF1-ENCFF405WKK.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF448JWW.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF448JWW.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF468AOG.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF468AOG.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF786WSB.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF786WSB.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF2-vs-GM12878-IKZF2-ENCFF578YIW.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF2-vs-GM12878-IKZF2-ENCFF578YIW.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF2-vs-GM12878-IKZF2-ENCFF615CIJ.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF2-vs-GM12878-IKZF2-ENCFF615CIJ.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3-vs-GM12878-IRF3-ENCFF679UBZ.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF3-vs-GM12878-IRF3-ENCFF679UBZ.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3-vs-GM12878-IRF3-ENCFF692CUY.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF3-vs-GM12878-IRF3-ENCFF692CUY.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF4-vs-GM12878-IRF4-ENCFF271OQQ.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF4-vs-GM12878-IRF4-ENCFF271OQQ.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF5-vs-GM12878-IRF5-ENCFF095VAP.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF5-vs-GM12878-IRF5-ENCFF095VAP.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUNB-vs-GM12878-JUNB-ENCFF185LJE.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUNB-vs-GM12878-JUNB-ENCFF185LJE.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND-vs-GM12878-JUND-ENCFF738BAA.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUND-vs-GM12878-JUND-ENCFF738BAA.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND-vs-GM12878-JUND-ENCFF825BIG.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUND-vs-GM12878-JUND-ENCFF825BIG.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.KLF5-vs-GM12878-KLF5-ENCFF970MYF.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.KLF5-vs-GM12878-KLF5-ENCFF970MYF.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAFK-vs-GM12878-MAFK-ENCFF043DXF.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAFK-vs-GM12878-MAFK-ENCFF043DXF.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAX-vs-GM12878-MAX-ENCFF712UBB.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAX-vs-GM12878-MAX-ENCFF712UBB.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-GM12878-MAZ-ENCFF211WVL.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAZ-vs-GM12878-MAZ-ENCFF211WVL.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-GM12878-MAZ-ENCFF250FJC.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAZ-vs-GM12878-MAZ-ENCFF250FJC.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2A-vs-GM12878-MEF2A-ENCFF775DWU.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2A-vs-GM12878-MEF2A-ENCFF775DWU.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2B-vs-GM12878-MEF2B-ENCFF780AUS.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2B-vs-GM12878-MEF2B-ENCFF780AUS.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2C-vs-GM12878-MEF2C-ENCFF264GAB.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2C-vs-GM12878-MEF2C-ENCFF264GAB.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MXI1-vs-GM12878-MXI1-ENCFF638YSV.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MXI1-vs-GM12878-MXI1-ENCFF638YSV.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYB-vs-GM12878-MYB-ENCFF208DZU.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MYB-vs-GM12878-MYB-ENCFF208DZU.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYC-vs-GM12878-MYC-ENCFF765CKK.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MYC-vs-GM12878-MYC-ENCFF765CKK.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC1-vs-GM12878-NFATC1-ENCFF565HHF.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFATC1-vs-GM12878-NFATC1-ENCFF565HHF.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC3-vs-GM12878-NFATC3-ENCFF623PTQ.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFATC3-vs-GM12878-NFATC3-ENCFF623PTQ.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFE2-vs-GM12878-NFE2-ENCFF729STF.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFE2-vs-GM12878-NFE2-ENCFF729STF.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFE2-vs-GM12878-NFE2-ENCFF766ERZ.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFE2-vs-GM12878-NFE2-ENCFF766ERZ.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYA-vs-GM12878-NFYA-ENCFF339IEZ.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFYA-vs-GM12878-NFYA-ENCFF339IEZ.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYB-vs-GM12878-NFYB-ENCFF359ATR.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFYB-vs-GM12878-NFYB-ENCFF359ATR.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C1-vs-GM12878-NR2C1-ENCFF271VCD.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2C1-vs-GM12878-NR2C1-ENCFF271VCD.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C2-vs-GM12878-NR2C2-ENCFF735IUU.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2C2-vs-GM12878-NR2C2-ENCFF735IUU.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2F1-vs-GM12878-NR2F1-ENCFF118UKC.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2F1-vs-GM12878-NR2F1-ENCFF118UKC.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NRF1-vs-GM12878-NRF1-ENCFF864EBU.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NRF1-vs-GM12878-NRF1-ENCFF864EBU.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-GM12878-PAX5-ENCFF220BTT.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX5-vs-GM12878-PAX5-ENCFF220BTT.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-GM12878-PAX5-ENCFF395KJU.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX5-vs-GM12878-PAX5-ENCFF395KJU.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX8-vs-GM12878-PAX8-ENCFF630IVV.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX8-vs-GM12878-PAX8-ENCFF630IVV.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PBX3-vs-GM12878-PBX3-ENCFF236XCG.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PBX3-vs-GM12878-PBX3-ENCFF236XCG.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PKNOX1-vs-GM12878-PKNOX1-ENCFF205YWV.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PKNOX1-vs-GM12878-PKNOX1-ENCFF205YWV.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.POU2F2-vs-GM12878-POU2F2-ENCFF433TJX.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.POU2F2-vs-GM12878-POU2F2-ENCFF433TJX.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-GM12878-RELA-ENCFF074NZK.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELA-vs-GM12878-RELA-ENCFF074NZK.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-GM12878-RELA-ENCFF218OPP.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELA-vs-GM12878-RELA-ENCFF218OPP.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELB-vs-GM12878-RELB-ENCFF505WBU.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELB-vs-GM12878-RELB-ENCFF505WBU.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-GM12878-REST-ENCFF348LKE.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.REST-vs-GM12878-REST-ENCFF348LKE.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-GM12878-REST-ENCFF428QEI.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.REST-vs-GM12878-REST-ENCFF428QEI.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RFX5-vs-GM12878-RFX5-ENCFF914AYR.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RFX5-vs-GM12878-RFX5-ENCFF914AYR.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RUNX3-vs-GM12878-RUNX3-ENCFF965LJE.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RUNX3-vs-GM12878-RUNX3-ENCFF965LJE.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RXRA-vs-GM12878-RXRA-ENCFF575ZLF.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RXRA-vs-GM12878-RXRA-ENCFF575ZLF.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SIX5-vs-GM12878-SIX5-ENCFF175SNC.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SIX5-vs-GM12878-SIX5-ENCFF175SNC.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SMAD1-vs-GM12878-SMAD1-ENCFF510SOO.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SMAD1-vs-GM12878-SMAD1-ENCFF510SOO.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SPI1-vs-GM12878-SPI1-ENCFF881ARS.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SPI1-vs-GM12878-SPI1-ENCFF881ARS.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF1-vs-GM12878-SREBF1-ENCFF729QOZ.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SREBF1-vs-GM12878-SREBF1-ENCFF729QOZ.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF2-vs-GM12878-SREBF2-ENCFF272RZS.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SREBF2-vs-GM12878-SREBF2-ENCFF272RZS.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF276KPQ.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF276KPQ.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF489QRS.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF489QRS.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF836NXG.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF836NXG.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-GM12878-STAT1-ENCFF780PWT.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT1-vs-GM12878-STAT1-ENCFF780PWT.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-GM12878-STAT1-ENCFF973ACG.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT1-vs-GM12878-STAT1-ENCFF973ACG.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT3-vs-GM12878-STAT3-ENCFF719YDJ.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT3-vs-GM12878-STAT3-ENCFF719YDJ.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT5A-vs-GM12878-STAT5A-ENCFF543CUS.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT5A-vs-GM12878-STAT5A-ENCFF543CUS.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBP-vs-GM12878-TBP-ENCFF863HTV.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TBP-vs-GM12878-TBP-ENCFF863HTV.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBX21-vs-GM12878-TBX21-ENCFF655AWD.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TBX21-vs-GM12878-TBX21-ENCFF655AWD.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-GM12878-TCF12-ENCFF342RNH.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF12-vs-GM12878-TCF12-ENCFF342RNH.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-GM12878-TCF12-ENCFF429FHY.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF12-vs-GM12878-TCF12-ENCFF429FHY.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF3-vs-GM12878-TCF3-ENCFF235NCI.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF3-vs-GM12878-TCF3-ENCFF235NCI.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF7-vs-GM12878-TCF7-ENCFF918LSK.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF7-vs-GM12878-TCF7-ENCFF918LSK.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF1-vs-GM12878-USF1-ENCFF688QPS.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.USF1-vs-GM12878-USF1-ENCFF688QPS.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF2-vs-GM12878-USF2-ENCFF666GZL.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.USF2-vs-GM12878-USF2-ENCFF666GZL.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YBX1-vs-GM12878-YBX1-ENCFF249ZOW.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YBX1-vs-GM12878-YBX1-ENCFF249ZOW.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1-vs-GM12878-YY1-ENCFF247QYO.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YY1-vs-GM12878-YY1-ENCFF247QYO.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1-vs-GM12878-YY1-ENCFF320PLB.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YY1-vs-GM12878-YY1-ENCFF320PLB.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBED1-vs-GM12878-ZBED1-ENCFF802ODC.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBED1-vs-GM12878-ZBED1-ENCFF802ODC.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33-vs-GM12878-ZBTB33-ENCFF099ANS.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB33-vs-GM12878-ZBTB33-ENCFF099ANS.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33-vs-GM12878-ZBTB33-ENCFF550LPG.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB33-vs-GM12878-ZBTB33-ENCFF550LPG.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB4-vs-GM12878-ZBTB4-ENCFF273OXB.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB4-vs-GM12878-ZBTB4-ENCFF273OXB.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZEB1-vs-GM12878-ZEB1-ENCFF363BVO.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZEB1-vs-GM12878-ZEB1-ENCFF363BVO.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF384-vs-GM12878-ZNF384-ENCFF990JXT.100radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZNF384-vs-GM12878-ZNF384-ENCFF990JXT.100radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARID3A-vs-GM12878-ARID3A-ENCFF722RPZ.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ARID3A-vs-GM12878-ARID3A-ENCFF722RPZ.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARNT-vs-GM12878-ARNT-ENCFF320KXO.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ARNT-vs-GM12878-ARNT-ENCFF320KXO.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF092GMD.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF092GMD.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF527XHG.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF527XHG.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF549FQE.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF549FQE.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF3-vs-GM12878-ATF3-ENCFF126EBD.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ATF3-vs-GM12878-ATF3-ENCFF126EBD.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF7-vs-GM12878-ATF7-ENCFF467OPR.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ATF7-vs-GM12878-ATF7-ENCFF467OPR.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BACH1-vs-GM12878-BACH1-ENCFF784KPL.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BACH1-vs-GM12878-BACH1-ENCFF784KPL.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BATF-vs-GM12878-BATF-ENCFF523WHP.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BATF-vs-GM12878-BATF-ENCFF523WHP.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BCL11A-vs-GM12878-BCL11A-ENCFF837XAJ.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BCL11A-vs-GM12878-BCL11A-ENCFF837XAJ.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BHLHE40-vs-GM12878-BHLHE40-ENCFF599AUJ.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BHLHE40-vs-GM12878-BHLHE40-ENCFF599AUJ.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BHLHE40-vs-GM12878-BHLHE40-ENCFF620MJF.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BHLHE40-vs-GM12878-BHLHE40-ENCFF620MJF.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CBFB-vs-GM12878-CBFB-ENCFF514WCR.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CBFB-vs-GM12878-CBFB-ENCFF514WCR.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB-vs-GM12878-CEBPB-ENCFF156OCY.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPB-vs-GM12878-CEBPB-ENCFF156OCY.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB-vs-GM12878-CEBPB-ENCFF370CBN.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPB-vs-GM12878-CEBPB-ENCFF370CBN.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPZ-vs-GM12878-CEBPZ-ENCFF056CTQ.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPZ-vs-GM12878-CEBPZ-ENCFF056CTQ.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREB1-vs-GM12878-CREB1-ENCFF552YPB.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CREB1-vs-GM12878-CREB1-ENCFF552YPB.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREM-vs-GM12878-CREM-ENCFF186QPL.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CREM-vs-GM12878-CREM-ENCFF186QPL.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF017XLW.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF017XLW.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF258AFQ.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF258AFQ.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF592UDD.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF592UDD.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF796WRU.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF796WRU.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CUX1-vs-GM12878-CUX1-ENCFF781JQX.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CUX1-vs-GM12878-CUX1-ENCFF781JQX.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F4-vs-GM12878-E2F4-ENCFF629TVV.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E2F4-vs-GM12878-E2F4-ENCFF629TVV.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F8-vs-GM12878-E2F8-ENCFF898QHB.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E2F8-vs-GM12878-E2F8-ENCFF898QHB.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E4F1-vs-GM12878-E4F1-ENCFF673IUB.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E4F1-vs-GM12878-E4F1-ENCFF673IUB.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-GM12878-EBF1-ENCFF374TSP.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EBF1-vs-GM12878-EBF1-ENCFF374TSP.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-GM12878-EBF1-ENCFF450YTC.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EBF1-vs-GM12878-EBF1-ENCFF450YTC.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EGR1-vs-GM12878-EGR1-ENCFF795QXQ.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EGR1-vs-GM12878-EGR1-ENCFF795QXQ.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-GM12878-ELF1-ENCFF141OOG.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELF1-vs-GM12878-ELF1-ENCFF141OOG.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-GM12878-ELF1-ENCFF349IFX.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELF1-vs-GM12878-ELF1-ENCFF349IFX.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELK1-vs-GM12878-ELK1-ENCFF463JDP.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELK1-vs-GM12878-ELK1-ENCFF463JDP.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ESRRA-vs-GM12878-ESRRA-ENCFF762CTH.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ESRRA-vs-GM12878-ESRRA-ENCFF762CTH.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETS1-vs-GM12878-ETS1-ENCFF368SVW.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETS1-vs-GM12878-ETS1-ENCFF368SVW.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6-vs-GM12878-ETV6-ENCFF342QUN.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETV6-vs-GM12878-ETV6-ENCFF342QUN.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6-vs-GM12878-ETV6-ENCFF655IXH.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETV6-vs-GM12878-ETV6-ENCFF655IXH.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOS-vs-GM12878-FOS-ENCFF949TIZ.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.FOS-vs-GM12878-FOS-ENCFF949TIZ.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOXM1-vs-GM12878-FOXM1-ENCFF114JXB.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.FOXM1-vs-GM12878-FOXM1-ENCFF114JXB.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF574ZEF.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF574ZEF.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF617GBZ.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF617GBZ.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF771RXX.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF771RXX.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HSF1-vs-GM12878-HSF1-ENCFF405WKK.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.HSF1-vs-GM12878-HSF1-ENCFF405WKK.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF448JWW.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF448JWW.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF468AOG.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF468AOG.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF786WSB.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF786WSB.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF2-vs-GM12878-IKZF2-ENCFF578YIW.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF2-vs-GM12878-IKZF2-ENCFF578YIW.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF2-vs-GM12878-IKZF2-ENCFF615CIJ.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF2-vs-GM12878-IKZF2-ENCFF615CIJ.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3-vs-GM12878-IRF3-ENCFF679UBZ.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF3-vs-GM12878-IRF3-ENCFF679UBZ.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3-vs-GM12878-IRF3-ENCFF692CUY.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF3-vs-GM12878-IRF3-ENCFF692CUY.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF4-vs-GM12878-IRF4-ENCFF271OQQ.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF4-vs-GM12878-IRF4-ENCFF271OQQ.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF5-vs-GM12878-IRF5-ENCFF095VAP.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF5-vs-GM12878-IRF5-ENCFF095VAP.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUNB-vs-GM12878-JUNB-ENCFF185LJE.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUNB-vs-GM12878-JUNB-ENCFF185LJE.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND-vs-GM12878-JUND-ENCFF738BAA.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUND-vs-GM12878-JUND-ENCFF738BAA.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND-vs-GM12878-JUND-ENCFF825BIG.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUND-vs-GM12878-JUND-ENCFF825BIG.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.KLF5-vs-GM12878-KLF5-ENCFF970MYF.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.KLF5-vs-GM12878-KLF5-ENCFF970MYF.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAFK-vs-GM12878-MAFK-ENCFF043DXF.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAFK-vs-GM12878-MAFK-ENCFF043DXF.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAX-vs-GM12878-MAX-ENCFF712UBB.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAX-vs-GM12878-MAX-ENCFF712UBB.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-GM12878-MAZ-ENCFF211WVL.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAZ-vs-GM12878-MAZ-ENCFF211WVL.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-GM12878-MAZ-ENCFF250FJC.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAZ-vs-GM12878-MAZ-ENCFF250FJC.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2A-vs-GM12878-MEF2A-ENCFF775DWU.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2A-vs-GM12878-MEF2A-ENCFF775DWU.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2B-vs-GM12878-MEF2B-ENCFF780AUS.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2B-vs-GM12878-MEF2B-ENCFF780AUS.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2C-vs-GM12878-MEF2C-ENCFF264GAB.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2C-vs-GM12878-MEF2C-ENCFF264GAB.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MXI1-vs-GM12878-MXI1-ENCFF638YSV.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MXI1-vs-GM12878-MXI1-ENCFF638YSV.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYB-vs-GM12878-MYB-ENCFF208DZU.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MYB-vs-GM12878-MYB-ENCFF208DZU.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYC-vs-GM12878-MYC-ENCFF765CKK.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MYC-vs-GM12878-MYC-ENCFF765CKK.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC1-vs-GM12878-NFATC1-ENCFF565HHF.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFATC1-vs-GM12878-NFATC1-ENCFF565HHF.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC3-vs-GM12878-NFATC3-ENCFF623PTQ.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFATC3-vs-GM12878-NFATC3-ENCFF623PTQ.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFE2-vs-GM12878-NFE2-ENCFF729STF.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFE2-vs-GM12878-NFE2-ENCFF729STF.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFE2-vs-GM12878-NFE2-ENCFF766ERZ.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFE2-vs-GM12878-NFE2-ENCFF766ERZ.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYA-vs-GM12878-NFYA-ENCFF339IEZ.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFYA-vs-GM12878-NFYA-ENCFF339IEZ.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYB-vs-GM12878-NFYB-ENCFF359ATR.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFYB-vs-GM12878-NFYB-ENCFF359ATR.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C1-vs-GM12878-NR2C1-ENCFF271VCD.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2C1-vs-GM12878-NR2C1-ENCFF271VCD.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C2-vs-GM12878-NR2C2-ENCFF735IUU.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2C2-vs-GM12878-NR2C2-ENCFF735IUU.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2F1-vs-GM12878-NR2F1-ENCFF118UKC.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2F1-vs-GM12878-NR2F1-ENCFF118UKC.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NRF1-vs-GM12878-NRF1-ENCFF864EBU.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NRF1-vs-GM12878-NRF1-ENCFF864EBU.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-GM12878-PAX5-ENCFF220BTT.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX5-vs-GM12878-PAX5-ENCFF220BTT.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-GM12878-PAX5-ENCFF395KJU.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX5-vs-GM12878-PAX5-ENCFF395KJU.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX8-vs-GM12878-PAX8-ENCFF630IVV.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX8-vs-GM12878-PAX8-ENCFF630IVV.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PBX3-vs-GM12878-PBX3-ENCFF236XCG.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PBX3-vs-GM12878-PBX3-ENCFF236XCG.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PKNOX1-vs-GM12878-PKNOX1-ENCFF205YWV.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PKNOX1-vs-GM12878-PKNOX1-ENCFF205YWV.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.POU2F2-vs-GM12878-POU2F2-ENCFF433TJX.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.POU2F2-vs-GM12878-POU2F2-ENCFF433TJX.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-GM12878-RELA-ENCFF074NZK.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELA-vs-GM12878-RELA-ENCFF074NZK.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-GM12878-RELA-ENCFF218OPP.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELA-vs-GM12878-RELA-ENCFF218OPP.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELB-vs-GM12878-RELB-ENCFF505WBU.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELB-vs-GM12878-RELB-ENCFF505WBU.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-GM12878-REST-ENCFF348LKE.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.REST-vs-GM12878-REST-ENCFF348LKE.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-GM12878-REST-ENCFF428QEI.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.REST-vs-GM12878-REST-ENCFF428QEI.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RFX5-vs-GM12878-RFX5-ENCFF914AYR.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RFX5-vs-GM12878-RFX5-ENCFF914AYR.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RUNX3-vs-GM12878-RUNX3-ENCFF965LJE.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RUNX3-vs-GM12878-RUNX3-ENCFF965LJE.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RXRA-vs-GM12878-RXRA-ENCFF575ZLF.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RXRA-vs-GM12878-RXRA-ENCFF575ZLF.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SIX5-vs-GM12878-SIX5-ENCFF175SNC.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SIX5-vs-GM12878-SIX5-ENCFF175SNC.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SMAD1-vs-GM12878-SMAD1-ENCFF510SOO.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SMAD1-vs-GM12878-SMAD1-ENCFF510SOO.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SPI1-vs-GM12878-SPI1-ENCFF881ARS.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SPI1-vs-GM12878-SPI1-ENCFF881ARS.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF1-vs-GM12878-SREBF1-ENCFF729QOZ.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SREBF1-vs-GM12878-SREBF1-ENCFF729QOZ.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF2-vs-GM12878-SREBF2-ENCFF272RZS.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SREBF2-vs-GM12878-SREBF2-ENCFF272RZS.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF276KPQ.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF276KPQ.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF489QRS.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF489QRS.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF836NXG.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF836NXG.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-GM12878-STAT1-ENCFF780PWT.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT1-vs-GM12878-STAT1-ENCFF780PWT.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-GM12878-STAT1-ENCFF973ACG.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT1-vs-GM12878-STAT1-ENCFF973ACG.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT3-vs-GM12878-STAT3-ENCFF719YDJ.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT3-vs-GM12878-STAT3-ENCFF719YDJ.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT5A-vs-GM12878-STAT5A-ENCFF543CUS.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT5A-vs-GM12878-STAT5A-ENCFF543CUS.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBP-vs-GM12878-TBP-ENCFF863HTV.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TBP-vs-GM12878-TBP-ENCFF863HTV.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBX21-vs-GM12878-TBX21-ENCFF655AWD.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TBX21-vs-GM12878-TBX21-ENCFF655AWD.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-GM12878-TCF12-ENCFF342RNH.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF12-vs-GM12878-TCF12-ENCFF342RNH.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-GM12878-TCF12-ENCFF429FHY.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF12-vs-GM12878-TCF12-ENCFF429FHY.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF3-vs-GM12878-TCF3-ENCFF235NCI.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF3-vs-GM12878-TCF3-ENCFF235NCI.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF7-vs-GM12878-TCF7-ENCFF918LSK.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF7-vs-GM12878-TCF7-ENCFF918LSK.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF1-vs-GM12878-USF1-ENCFF688QPS.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.USF1-vs-GM12878-USF1-ENCFF688QPS.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF2-vs-GM12878-USF2-ENCFF666GZL.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.USF2-vs-GM12878-USF2-ENCFF666GZL.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YBX1-vs-GM12878-YBX1-ENCFF249ZOW.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YBX1-vs-GM12878-YBX1-ENCFF249ZOW.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1-vs-GM12878-YY1-ENCFF247QYO.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YY1-vs-GM12878-YY1-ENCFF247QYO.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1-vs-GM12878-YY1-ENCFF320PLB.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YY1-vs-GM12878-YY1-ENCFF320PLB.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBED1-vs-GM12878-ZBED1-ENCFF802ODC.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBED1-vs-GM12878-ZBED1-ENCFF802ODC.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33-vs-GM12878-ZBTB33-ENCFF099ANS.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB33-vs-GM12878-ZBTB33-ENCFF099ANS.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33-vs-GM12878-ZBTB33-ENCFF550LPG.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB33-vs-GM12878-ZBTB33-ENCFF550LPG.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB4-vs-GM12878-ZBTB4-ENCFF273OXB.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB4-vs-GM12878-ZBTB4-ENCFF273OXB.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZEB1-vs-GM12878-ZEB1-ENCFF363BVO.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZEB1-vs-GM12878-ZEB1-ENCFF363BVO.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF384-vs-GM12878-ZNF384-ENCFF990JXT.50radius_split.Q2 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZNF384-vs-GM12878-ZNF384-ENCFF990JXT.50radius_split.Q2.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARID3A-vs-GM12878-ARID3A-ENCFF722RPZ.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ARID3A-vs-GM12878-ARID3A-ENCFF722RPZ.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARNT-vs-GM12878-ARNT-ENCFF320KXO.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ARNT-vs-GM12878-ARNT-ENCFF320KXO.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF092GMD.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF092GMD.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF527XHG.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF527XHG.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF549FQE.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF549FQE.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF3-vs-GM12878-ATF3-ENCFF126EBD.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ATF3-vs-GM12878-ATF3-ENCFF126EBD.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF7-vs-GM12878-ATF7-ENCFF467OPR.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ATF7-vs-GM12878-ATF7-ENCFF467OPR.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BACH1-vs-GM12878-BACH1-ENCFF784KPL.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BACH1-vs-GM12878-BACH1-ENCFF784KPL.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BATF-vs-GM12878-BATF-ENCFF523WHP.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BATF-vs-GM12878-BATF-ENCFF523WHP.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BCL11A-vs-GM12878-BCL11A-ENCFF837XAJ.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BCL11A-vs-GM12878-BCL11A-ENCFF837XAJ.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BHLHE40-vs-GM12878-BHLHE40-ENCFF599AUJ.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BHLHE40-vs-GM12878-BHLHE40-ENCFF599AUJ.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BHLHE40-vs-GM12878-BHLHE40-ENCFF620MJF.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BHLHE40-vs-GM12878-BHLHE40-ENCFF620MJF.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CBFB-vs-GM12878-CBFB-ENCFF514WCR.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CBFB-vs-GM12878-CBFB-ENCFF514WCR.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB-vs-GM12878-CEBPB-ENCFF156OCY.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPB-vs-GM12878-CEBPB-ENCFF156OCY.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB-vs-GM12878-CEBPB-ENCFF370CBN.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPB-vs-GM12878-CEBPB-ENCFF370CBN.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPZ-vs-GM12878-CEBPZ-ENCFF056CTQ.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPZ-vs-GM12878-CEBPZ-ENCFF056CTQ.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREB1-vs-GM12878-CREB1-ENCFF552YPB.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CREB1-vs-GM12878-CREB1-ENCFF552YPB.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREM-vs-GM12878-CREM-ENCFF186QPL.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CREM-vs-GM12878-CREM-ENCFF186QPL.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF017XLW.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF017XLW.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF258AFQ.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF258AFQ.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF592UDD.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF592UDD.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF796WRU.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF796WRU.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CUX1-vs-GM12878-CUX1-ENCFF781JQX.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CUX1-vs-GM12878-CUX1-ENCFF781JQX.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F4-vs-GM12878-E2F4-ENCFF629TVV.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E2F4-vs-GM12878-E2F4-ENCFF629TVV.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F8-vs-GM12878-E2F8-ENCFF898QHB.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E2F8-vs-GM12878-E2F8-ENCFF898QHB.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E4F1-vs-GM12878-E4F1-ENCFF673IUB.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E4F1-vs-GM12878-E4F1-ENCFF673IUB.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-GM12878-EBF1-ENCFF374TSP.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EBF1-vs-GM12878-EBF1-ENCFF374TSP.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-GM12878-EBF1-ENCFF450YTC.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EBF1-vs-GM12878-EBF1-ENCFF450YTC.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EGR1-vs-GM12878-EGR1-ENCFF795QXQ.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EGR1-vs-GM12878-EGR1-ENCFF795QXQ.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-GM12878-ELF1-ENCFF141OOG.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELF1-vs-GM12878-ELF1-ENCFF141OOG.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-GM12878-ELF1-ENCFF349IFX.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELF1-vs-GM12878-ELF1-ENCFF349IFX.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELK1-vs-GM12878-ELK1-ENCFF463JDP.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELK1-vs-GM12878-ELK1-ENCFF463JDP.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ESRRA-vs-GM12878-ESRRA-ENCFF762CTH.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ESRRA-vs-GM12878-ESRRA-ENCFF762CTH.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETS1-vs-GM12878-ETS1-ENCFF368SVW.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETS1-vs-GM12878-ETS1-ENCFF368SVW.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6-vs-GM12878-ETV6-ENCFF342QUN.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETV6-vs-GM12878-ETV6-ENCFF342QUN.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6-vs-GM12878-ETV6-ENCFF655IXH.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETV6-vs-GM12878-ETV6-ENCFF655IXH.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOS-vs-GM12878-FOS-ENCFF949TIZ.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.FOS-vs-GM12878-FOS-ENCFF949TIZ.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOXM1-vs-GM12878-FOXM1-ENCFF114JXB.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.FOXM1-vs-GM12878-FOXM1-ENCFF114JXB.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF574ZEF.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF574ZEF.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF617GBZ.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF617GBZ.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF771RXX.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF771RXX.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HSF1-vs-GM12878-HSF1-ENCFF405WKK.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.HSF1-vs-GM12878-HSF1-ENCFF405WKK.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF448JWW.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF448JWW.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF468AOG.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF468AOG.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF786WSB.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF786WSB.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF2-vs-GM12878-IKZF2-ENCFF578YIW.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF2-vs-GM12878-IKZF2-ENCFF578YIW.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF2-vs-GM12878-IKZF2-ENCFF615CIJ.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF2-vs-GM12878-IKZF2-ENCFF615CIJ.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3-vs-GM12878-IRF3-ENCFF679UBZ.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF3-vs-GM12878-IRF3-ENCFF679UBZ.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3-vs-GM12878-IRF3-ENCFF692CUY.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF3-vs-GM12878-IRF3-ENCFF692CUY.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF4-vs-GM12878-IRF4-ENCFF271OQQ.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF4-vs-GM12878-IRF4-ENCFF271OQQ.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF5-vs-GM12878-IRF5-ENCFF095VAP.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF5-vs-GM12878-IRF5-ENCFF095VAP.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUNB-vs-GM12878-JUNB-ENCFF185LJE.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUNB-vs-GM12878-JUNB-ENCFF185LJE.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND-vs-GM12878-JUND-ENCFF738BAA.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUND-vs-GM12878-JUND-ENCFF738BAA.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND-vs-GM12878-JUND-ENCFF825BIG.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUND-vs-GM12878-JUND-ENCFF825BIG.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.KLF5-vs-GM12878-KLF5-ENCFF970MYF.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.KLF5-vs-GM12878-KLF5-ENCFF970MYF.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAFK-vs-GM12878-MAFK-ENCFF043DXF.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAFK-vs-GM12878-MAFK-ENCFF043DXF.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAX-vs-GM12878-MAX-ENCFF712UBB.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAX-vs-GM12878-MAX-ENCFF712UBB.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-GM12878-MAZ-ENCFF211WVL.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAZ-vs-GM12878-MAZ-ENCFF211WVL.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-GM12878-MAZ-ENCFF250FJC.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAZ-vs-GM12878-MAZ-ENCFF250FJC.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2A-vs-GM12878-MEF2A-ENCFF775DWU.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2A-vs-GM12878-MEF2A-ENCFF775DWU.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2B-vs-GM12878-MEF2B-ENCFF780AUS.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2B-vs-GM12878-MEF2B-ENCFF780AUS.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2C-vs-GM12878-MEF2C-ENCFF264GAB.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2C-vs-GM12878-MEF2C-ENCFF264GAB.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MXI1-vs-GM12878-MXI1-ENCFF638YSV.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MXI1-vs-GM12878-MXI1-ENCFF638YSV.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYB-vs-GM12878-MYB-ENCFF208DZU.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MYB-vs-GM12878-MYB-ENCFF208DZU.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYC-vs-GM12878-MYC-ENCFF765CKK.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MYC-vs-GM12878-MYC-ENCFF765CKK.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC1-vs-GM12878-NFATC1-ENCFF565HHF.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFATC1-vs-GM12878-NFATC1-ENCFF565HHF.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC3-vs-GM12878-NFATC3-ENCFF623PTQ.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFATC3-vs-GM12878-NFATC3-ENCFF623PTQ.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFE2-vs-GM12878-NFE2-ENCFF729STF.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFE2-vs-GM12878-NFE2-ENCFF729STF.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFE2-vs-GM12878-NFE2-ENCFF766ERZ.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFE2-vs-GM12878-NFE2-ENCFF766ERZ.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYA-vs-GM12878-NFYA-ENCFF339IEZ.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFYA-vs-GM12878-NFYA-ENCFF339IEZ.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYB-vs-GM12878-NFYB-ENCFF359ATR.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFYB-vs-GM12878-NFYB-ENCFF359ATR.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C1-vs-GM12878-NR2C1-ENCFF271VCD.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2C1-vs-GM12878-NR2C1-ENCFF271VCD.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C2-vs-GM12878-NR2C2-ENCFF735IUU.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2C2-vs-GM12878-NR2C2-ENCFF735IUU.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2F1-vs-GM12878-NR2F1-ENCFF118UKC.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2F1-vs-GM12878-NR2F1-ENCFF118UKC.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NRF1-vs-GM12878-NRF1-ENCFF864EBU.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NRF1-vs-GM12878-NRF1-ENCFF864EBU.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-GM12878-PAX5-ENCFF220BTT.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX5-vs-GM12878-PAX5-ENCFF220BTT.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-GM12878-PAX5-ENCFF395KJU.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX5-vs-GM12878-PAX5-ENCFF395KJU.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX8-vs-GM12878-PAX8-ENCFF630IVV.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX8-vs-GM12878-PAX8-ENCFF630IVV.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PBX3-vs-GM12878-PBX3-ENCFF236XCG.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PBX3-vs-GM12878-PBX3-ENCFF236XCG.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PKNOX1-vs-GM12878-PKNOX1-ENCFF205YWV.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PKNOX1-vs-GM12878-PKNOX1-ENCFF205YWV.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.POU2F2-vs-GM12878-POU2F2-ENCFF433TJX.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.POU2F2-vs-GM12878-POU2F2-ENCFF433TJX.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-GM12878-RELA-ENCFF074NZK.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELA-vs-GM12878-RELA-ENCFF074NZK.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-GM12878-RELA-ENCFF218OPP.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELA-vs-GM12878-RELA-ENCFF218OPP.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELB-vs-GM12878-RELB-ENCFF505WBU.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELB-vs-GM12878-RELB-ENCFF505WBU.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-GM12878-REST-ENCFF348LKE.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.REST-vs-GM12878-REST-ENCFF348LKE.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-GM12878-REST-ENCFF428QEI.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.REST-vs-GM12878-REST-ENCFF428QEI.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RFX5-vs-GM12878-RFX5-ENCFF914AYR.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RFX5-vs-GM12878-RFX5-ENCFF914AYR.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RUNX3-vs-GM12878-RUNX3-ENCFF965LJE.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RUNX3-vs-GM12878-RUNX3-ENCFF965LJE.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RXRA-vs-GM12878-RXRA-ENCFF575ZLF.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RXRA-vs-GM12878-RXRA-ENCFF575ZLF.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SIX5-vs-GM12878-SIX5-ENCFF175SNC.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SIX5-vs-GM12878-SIX5-ENCFF175SNC.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SMAD1-vs-GM12878-SMAD1-ENCFF510SOO.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SMAD1-vs-GM12878-SMAD1-ENCFF510SOO.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SPI1-vs-GM12878-SPI1-ENCFF881ARS.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SPI1-vs-GM12878-SPI1-ENCFF881ARS.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF1-vs-GM12878-SREBF1-ENCFF729QOZ.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SREBF1-vs-GM12878-SREBF1-ENCFF729QOZ.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF2-vs-GM12878-SREBF2-ENCFF272RZS.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SREBF2-vs-GM12878-SREBF2-ENCFF272RZS.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF276KPQ.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF276KPQ.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF489QRS.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF489QRS.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF836NXG.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF836NXG.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-GM12878-STAT1-ENCFF780PWT.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT1-vs-GM12878-STAT1-ENCFF780PWT.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-GM12878-STAT1-ENCFF973ACG.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT1-vs-GM12878-STAT1-ENCFF973ACG.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT3-vs-GM12878-STAT3-ENCFF719YDJ.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT3-vs-GM12878-STAT3-ENCFF719YDJ.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT5A-vs-GM12878-STAT5A-ENCFF543CUS.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT5A-vs-GM12878-STAT5A-ENCFF543CUS.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBP-vs-GM12878-TBP-ENCFF863HTV.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TBP-vs-GM12878-TBP-ENCFF863HTV.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBX21-vs-GM12878-TBX21-ENCFF655AWD.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TBX21-vs-GM12878-TBX21-ENCFF655AWD.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-GM12878-TCF12-ENCFF342RNH.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF12-vs-GM12878-TCF12-ENCFF342RNH.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-GM12878-TCF12-ENCFF429FHY.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF12-vs-GM12878-TCF12-ENCFF429FHY.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF3-vs-GM12878-TCF3-ENCFF235NCI.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF3-vs-GM12878-TCF3-ENCFF235NCI.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF7-vs-GM12878-TCF7-ENCFF918LSK.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF7-vs-GM12878-TCF7-ENCFF918LSK.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF1-vs-GM12878-USF1-ENCFF688QPS.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.USF1-vs-GM12878-USF1-ENCFF688QPS.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF2-vs-GM12878-USF2-ENCFF666GZL.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.USF2-vs-GM12878-USF2-ENCFF666GZL.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YBX1-vs-GM12878-YBX1-ENCFF249ZOW.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YBX1-vs-GM12878-YBX1-ENCFF249ZOW.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1-vs-GM12878-YY1-ENCFF247QYO.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YY1-vs-GM12878-YY1-ENCFF247QYO.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1-vs-GM12878-YY1-ENCFF320PLB.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YY1-vs-GM12878-YY1-ENCFF320PLB.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBED1-vs-GM12878-ZBED1-ENCFF802ODC.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBED1-vs-GM12878-ZBED1-ENCFF802ODC.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33-vs-GM12878-ZBTB33-ENCFF099ANS.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB33-vs-GM12878-ZBTB33-ENCFF099ANS.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33-vs-GM12878-ZBTB33-ENCFF550LPG.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB33-vs-GM12878-ZBTB33-ENCFF550LPG.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB4-vs-GM12878-ZBTB4-ENCFF273OXB.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB4-vs-GM12878-ZBTB4-ENCFF273OXB.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZEB1-vs-GM12878-ZEB1-ENCFF363BVO.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZEB1-vs-GM12878-ZEB1-ENCFF363BVO.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF384-vs-GM12878-ZNF384-ENCFF990JXT.100radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZNF384-vs-GM12878-ZNF384-ENCFF990JXT.100radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARID3A-vs-GM12878-ARID3A-ENCFF722RPZ.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ARID3A-vs-GM12878-ARID3A-ENCFF722RPZ.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARNT-vs-GM12878-ARNT-ENCFF320KXO.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ARNT-vs-GM12878-ARNT-ENCFF320KXO.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF092GMD.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF092GMD.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF527XHG.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF527XHG.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF549FQE.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF549FQE.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF3-vs-GM12878-ATF3-ENCFF126EBD.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ATF3-vs-GM12878-ATF3-ENCFF126EBD.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF7-vs-GM12878-ATF7-ENCFF467OPR.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ATF7-vs-GM12878-ATF7-ENCFF467OPR.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BACH1-vs-GM12878-BACH1-ENCFF784KPL.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BACH1-vs-GM12878-BACH1-ENCFF784KPL.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BATF-vs-GM12878-BATF-ENCFF523WHP.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BATF-vs-GM12878-BATF-ENCFF523WHP.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BCL11A-vs-GM12878-BCL11A-ENCFF837XAJ.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BCL11A-vs-GM12878-BCL11A-ENCFF837XAJ.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BHLHE40-vs-GM12878-BHLHE40-ENCFF599AUJ.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BHLHE40-vs-GM12878-BHLHE40-ENCFF599AUJ.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BHLHE40-vs-GM12878-BHLHE40-ENCFF620MJF.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BHLHE40-vs-GM12878-BHLHE40-ENCFF620MJF.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CBFB-vs-GM12878-CBFB-ENCFF514WCR.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CBFB-vs-GM12878-CBFB-ENCFF514WCR.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB-vs-GM12878-CEBPB-ENCFF156OCY.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPB-vs-GM12878-CEBPB-ENCFF156OCY.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB-vs-GM12878-CEBPB-ENCFF370CBN.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPB-vs-GM12878-CEBPB-ENCFF370CBN.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPZ-vs-GM12878-CEBPZ-ENCFF056CTQ.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPZ-vs-GM12878-CEBPZ-ENCFF056CTQ.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREB1-vs-GM12878-CREB1-ENCFF552YPB.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CREB1-vs-GM12878-CREB1-ENCFF552YPB.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREM-vs-GM12878-CREM-ENCFF186QPL.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CREM-vs-GM12878-CREM-ENCFF186QPL.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF017XLW.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF017XLW.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF258AFQ.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF258AFQ.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF592UDD.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF592UDD.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF796WRU.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF796WRU.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CUX1-vs-GM12878-CUX1-ENCFF781JQX.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CUX1-vs-GM12878-CUX1-ENCFF781JQX.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F4-vs-GM12878-E2F4-ENCFF629TVV.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E2F4-vs-GM12878-E2F4-ENCFF629TVV.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F8-vs-GM12878-E2F8-ENCFF898QHB.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E2F8-vs-GM12878-E2F8-ENCFF898QHB.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E4F1-vs-GM12878-E4F1-ENCFF673IUB.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E4F1-vs-GM12878-E4F1-ENCFF673IUB.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-GM12878-EBF1-ENCFF374TSP.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EBF1-vs-GM12878-EBF1-ENCFF374TSP.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-GM12878-EBF1-ENCFF450YTC.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EBF1-vs-GM12878-EBF1-ENCFF450YTC.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EGR1-vs-GM12878-EGR1-ENCFF795QXQ.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EGR1-vs-GM12878-EGR1-ENCFF795QXQ.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-GM12878-ELF1-ENCFF141OOG.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELF1-vs-GM12878-ELF1-ENCFF141OOG.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-GM12878-ELF1-ENCFF349IFX.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELF1-vs-GM12878-ELF1-ENCFF349IFX.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELK1-vs-GM12878-ELK1-ENCFF463JDP.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELK1-vs-GM12878-ELK1-ENCFF463JDP.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ESRRA-vs-GM12878-ESRRA-ENCFF762CTH.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ESRRA-vs-GM12878-ESRRA-ENCFF762CTH.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETS1-vs-GM12878-ETS1-ENCFF368SVW.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETS1-vs-GM12878-ETS1-ENCFF368SVW.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6-vs-GM12878-ETV6-ENCFF342QUN.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETV6-vs-GM12878-ETV6-ENCFF342QUN.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6-vs-GM12878-ETV6-ENCFF655IXH.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETV6-vs-GM12878-ETV6-ENCFF655IXH.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOS-vs-GM12878-FOS-ENCFF949TIZ.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.FOS-vs-GM12878-FOS-ENCFF949TIZ.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOXM1-vs-GM12878-FOXM1-ENCFF114JXB.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.FOXM1-vs-GM12878-FOXM1-ENCFF114JXB.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF574ZEF.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF574ZEF.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF617GBZ.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF617GBZ.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF771RXX.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF771RXX.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HSF1-vs-GM12878-HSF1-ENCFF405WKK.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.HSF1-vs-GM12878-HSF1-ENCFF405WKK.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF448JWW.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF448JWW.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF468AOG.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF468AOG.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF786WSB.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF786WSB.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF2-vs-GM12878-IKZF2-ENCFF578YIW.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF2-vs-GM12878-IKZF2-ENCFF578YIW.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF2-vs-GM12878-IKZF2-ENCFF615CIJ.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF2-vs-GM12878-IKZF2-ENCFF615CIJ.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3-vs-GM12878-IRF3-ENCFF679UBZ.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF3-vs-GM12878-IRF3-ENCFF679UBZ.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3-vs-GM12878-IRF3-ENCFF692CUY.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF3-vs-GM12878-IRF3-ENCFF692CUY.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF4-vs-GM12878-IRF4-ENCFF271OQQ.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF4-vs-GM12878-IRF4-ENCFF271OQQ.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF5-vs-GM12878-IRF5-ENCFF095VAP.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF5-vs-GM12878-IRF5-ENCFF095VAP.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUNB-vs-GM12878-JUNB-ENCFF185LJE.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUNB-vs-GM12878-JUNB-ENCFF185LJE.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND-vs-GM12878-JUND-ENCFF738BAA.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUND-vs-GM12878-JUND-ENCFF738BAA.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND-vs-GM12878-JUND-ENCFF825BIG.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUND-vs-GM12878-JUND-ENCFF825BIG.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.KLF5-vs-GM12878-KLF5-ENCFF970MYF.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.KLF5-vs-GM12878-KLF5-ENCFF970MYF.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAFK-vs-GM12878-MAFK-ENCFF043DXF.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAFK-vs-GM12878-MAFK-ENCFF043DXF.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAX-vs-GM12878-MAX-ENCFF712UBB.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAX-vs-GM12878-MAX-ENCFF712UBB.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-GM12878-MAZ-ENCFF211WVL.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAZ-vs-GM12878-MAZ-ENCFF211WVL.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-GM12878-MAZ-ENCFF250FJC.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAZ-vs-GM12878-MAZ-ENCFF250FJC.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2A-vs-GM12878-MEF2A-ENCFF775DWU.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2A-vs-GM12878-MEF2A-ENCFF775DWU.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2B-vs-GM12878-MEF2B-ENCFF780AUS.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2B-vs-GM12878-MEF2B-ENCFF780AUS.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2C-vs-GM12878-MEF2C-ENCFF264GAB.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2C-vs-GM12878-MEF2C-ENCFF264GAB.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MXI1-vs-GM12878-MXI1-ENCFF638YSV.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MXI1-vs-GM12878-MXI1-ENCFF638YSV.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYB-vs-GM12878-MYB-ENCFF208DZU.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MYB-vs-GM12878-MYB-ENCFF208DZU.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYC-vs-GM12878-MYC-ENCFF765CKK.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MYC-vs-GM12878-MYC-ENCFF765CKK.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC1-vs-GM12878-NFATC1-ENCFF565HHF.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFATC1-vs-GM12878-NFATC1-ENCFF565HHF.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC3-vs-GM12878-NFATC3-ENCFF623PTQ.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFATC3-vs-GM12878-NFATC3-ENCFF623PTQ.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFE2-vs-GM12878-NFE2-ENCFF729STF.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFE2-vs-GM12878-NFE2-ENCFF729STF.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFE2-vs-GM12878-NFE2-ENCFF766ERZ.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFE2-vs-GM12878-NFE2-ENCFF766ERZ.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYA-vs-GM12878-NFYA-ENCFF339IEZ.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFYA-vs-GM12878-NFYA-ENCFF339IEZ.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYB-vs-GM12878-NFYB-ENCFF359ATR.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFYB-vs-GM12878-NFYB-ENCFF359ATR.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C1-vs-GM12878-NR2C1-ENCFF271VCD.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2C1-vs-GM12878-NR2C1-ENCFF271VCD.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C2-vs-GM12878-NR2C2-ENCFF735IUU.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2C2-vs-GM12878-NR2C2-ENCFF735IUU.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2F1-vs-GM12878-NR2F1-ENCFF118UKC.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2F1-vs-GM12878-NR2F1-ENCFF118UKC.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NRF1-vs-GM12878-NRF1-ENCFF864EBU.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NRF1-vs-GM12878-NRF1-ENCFF864EBU.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-GM12878-PAX5-ENCFF220BTT.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX5-vs-GM12878-PAX5-ENCFF220BTT.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-GM12878-PAX5-ENCFF395KJU.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX5-vs-GM12878-PAX5-ENCFF395KJU.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX8-vs-GM12878-PAX8-ENCFF630IVV.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX8-vs-GM12878-PAX8-ENCFF630IVV.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PBX3-vs-GM12878-PBX3-ENCFF236XCG.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PBX3-vs-GM12878-PBX3-ENCFF236XCG.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PKNOX1-vs-GM12878-PKNOX1-ENCFF205YWV.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PKNOX1-vs-GM12878-PKNOX1-ENCFF205YWV.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.POU2F2-vs-GM12878-POU2F2-ENCFF433TJX.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.POU2F2-vs-GM12878-POU2F2-ENCFF433TJX.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-GM12878-RELA-ENCFF074NZK.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELA-vs-GM12878-RELA-ENCFF074NZK.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-GM12878-RELA-ENCFF218OPP.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELA-vs-GM12878-RELA-ENCFF218OPP.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELB-vs-GM12878-RELB-ENCFF505WBU.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELB-vs-GM12878-RELB-ENCFF505WBU.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-GM12878-REST-ENCFF348LKE.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.REST-vs-GM12878-REST-ENCFF348LKE.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-GM12878-REST-ENCFF428QEI.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.REST-vs-GM12878-REST-ENCFF428QEI.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RFX5-vs-GM12878-RFX5-ENCFF914AYR.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RFX5-vs-GM12878-RFX5-ENCFF914AYR.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RUNX3-vs-GM12878-RUNX3-ENCFF965LJE.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RUNX3-vs-GM12878-RUNX3-ENCFF965LJE.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RXRA-vs-GM12878-RXRA-ENCFF575ZLF.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RXRA-vs-GM12878-RXRA-ENCFF575ZLF.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SIX5-vs-GM12878-SIX5-ENCFF175SNC.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SIX5-vs-GM12878-SIX5-ENCFF175SNC.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SMAD1-vs-GM12878-SMAD1-ENCFF510SOO.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SMAD1-vs-GM12878-SMAD1-ENCFF510SOO.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SPI1-vs-GM12878-SPI1-ENCFF881ARS.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SPI1-vs-GM12878-SPI1-ENCFF881ARS.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF1-vs-GM12878-SREBF1-ENCFF729QOZ.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SREBF1-vs-GM12878-SREBF1-ENCFF729QOZ.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF2-vs-GM12878-SREBF2-ENCFF272RZS.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SREBF2-vs-GM12878-SREBF2-ENCFF272RZS.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF276KPQ.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF276KPQ.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF489QRS.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF489QRS.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF836NXG.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF836NXG.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-GM12878-STAT1-ENCFF780PWT.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT1-vs-GM12878-STAT1-ENCFF780PWT.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-GM12878-STAT1-ENCFF973ACG.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT1-vs-GM12878-STAT1-ENCFF973ACG.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT3-vs-GM12878-STAT3-ENCFF719YDJ.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT3-vs-GM12878-STAT3-ENCFF719YDJ.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT5A-vs-GM12878-STAT5A-ENCFF543CUS.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT5A-vs-GM12878-STAT5A-ENCFF543CUS.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBP-vs-GM12878-TBP-ENCFF863HTV.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TBP-vs-GM12878-TBP-ENCFF863HTV.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBX21-vs-GM12878-TBX21-ENCFF655AWD.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TBX21-vs-GM12878-TBX21-ENCFF655AWD.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-GM12878-TCF12-ENCFF342RNH.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF12-vs-GM12878-TCF12-ENCFF342RNH.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-GM12878-TCF12-ENCFF429FHY.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF12-vs-GM12878-TCF12-ENCFF429FHY.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF3-vs-GM12878-TCF3-ENCFF235NCI.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF3-vs-GM12878-TCF3-ENCFF235NCI.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF7-vs-GM12878-TCF7-ENCFF918LSK.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF7-vs-GM12878-TCF7-ENCFF918LSK.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF1-vs-GM12878-USF1-ENCFF688QPS.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.USF1-vs-GM12878-USF1-ENCFF688QPS.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF2-vs-GM12878-USF2-ENCFF666GZL.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.USF2-vs-GM12878-USF2-ENCFF666GZL.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YBX1-vs-GM12878-YBX1-ENCFF249ZOW.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YBX1-vs-GM12878-YBX1-ENCFF249ZOW.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1-vs-GM12878-YY1-ENCFF247QYO.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YY1-vs-GM12878-YY1-ENCFF247QYO.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1-vs-GM12878-YY1-ENCFF320PLB.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YY1-vs-GM12878-YY1-ENCFF320PLB.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBED1-vs-GM12878-ZBED1-ENCFF802ODC.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBED1-vs-GM12878-ZBED1-ENCFF802ODC.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33-vs-GM12878-ZBTB33-ENCFF099ANS.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB33-vs-GM12878-ZBTB33-ENCFF099ANS.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33-vs-GM12878-ZBTB33-ENCFF550LPG.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB33-vs-GM12878-ZBTB33-ENCFF550LPG.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB4-vs-GM12878-ZBTB4-ENCFF273OXB.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB4-vs-GM12878-ZBTB4-ENCFF273OXB.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZEB1-vs-GM12878-ZEB1-ENCFF363BVO.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZEB1-vs-GM12878-ZEB1-ENCFF363BVO.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF384-vs-GM12878-ZNF384-ENCFF990JXT.50radius_split.Q3 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZNF384-vs-GM12878-ZNF384-ENCFF990JXT.50radius_split.Q3.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARID3A-vs-GM12878-ARID3A-ENCFF722RPZ.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ARID3A-vs-GM12878-ARID3A-ENCFF722RPZ.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARNT-vs-GM12878-ARNT-ENCFF320KXO.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ARNT-vs-GM12878-ARNT-ENCFF320KXO.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF092GMD.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF092GMD.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF527XHG.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF527XHG.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF549FQE.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF549FQE.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF3-vs-GM12878-ATF3-ENCFF126EBD.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ATF3-vs-GM12878-ATF3-ENCFF126EBD.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF7-vs-GM12878-ATF7-ENCFF467OPR.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ATF7-vs-GM12878-ATF7-ENCFF467OPR.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BACH1-vs-GM12878-BACH1-ENCFF784KPL.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BACH1-vs-GM12878-BACH1-ENCFF784KPL.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BATF-vs-GM12878-BATF-ENCFF523WHP.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BATF-vs-GM12878-BATF-ENCFF523WHP.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BCL11A-vs-GM12878-BCL11A-ENCFF837XAJ.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BCL11A-vs-GM12878-BCL11A-ENCFF837XAJ.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BHLHE40-vs-GM12878-BHLHE40-ENCFF599AUJ.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BHLHE40-vs-GM12878-BHLHE40-ENCFF599AUJ.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BHLHE40-vs-GM12878-BHLHE40-ENCFF620MJF.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BHLHE40-vs-GM12878-BHLHE40-ENCFF620MJF.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CBFB-vs-GM12878-CBFB-ENCFF514WCR.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CBFB-vs-GM12878-CBFB-ENCFF514WCR.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB-vs-GM12878-CEBPB-ENCFF156OCY.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPB-vs-GM12878-CEBPB-ENCFF156OCY.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB-vs-GM12878-CEBPB-ENCFF370CBN.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPB-vs-GM12878-CEBPB-ENCFF370CBN.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPZ-vs-GM12878-CEBPZ-ENCFF056CTQ.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPZ-vs-GM12878-CEBPZ-ENCFF056CTQ.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREB1-vs-GM12878-CREB1-ENCFF552YPB.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CREB1-vs-GM12878-CREB1-ENCFF552YPB.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREM-vs-GM12878-CREM-ENCFF186QPL.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CREM-vs-GM12878-CREM-ENCFF186QPL.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF017XLW.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF017XLW.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF258AFQ.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF258AFQ.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF592UDD.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF592UDD.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF796WRU.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF796WRU.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CUX1-vs-GM12878-CUX1-ENCFF781JQX.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CUX1-vs-GM12878-CUX1-ENCFF781JQX.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F4-vs-GM12878-E2F4-ENCFF629TVV.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E2F4-vs-GM12878-E2F4-ENCFF629TVV.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F8-vs-GM12878-E2F8-ENCFF898QHB.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E2F8-vs-GM12878-E2F8-ENCFF898QHB.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E4F1-vs-GM12878-E4F1-ENCFF673IUB.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E4F1-vs-GM12878-E4F1-ENCFF673IUB.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-GM12878-EBF1-ENCFF374TSP.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EBF1-vs-GM12878-EBF1-ENCFF374TSP.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-GM12878-EBF1-ENCFF450YTC.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EBF1-vs-GM12878-EBF1-ENCFF450YTC.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EGR1-vs-GM12878-EGR1-ENCFF795QXQ.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EGR1-vs-GM12878-EGR1-ENCFF795QXQ.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-GM12878-ELF1-ENCFF141OOG.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELF1-vs-GM12878-ELF1-ENCFF141OOG.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-GM12878-ELF1-ENCFF349IFX.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELF1-vs-GM12878-ELF1-ENCFF349IFX.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELK1-vs-GM12878-ELK1-ENCFF463JDP.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELK1-vs-GM12878-ELK1-ENCFF463JDP.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ESRRA-vs-GM12878-ESRRA-ENCFF762CTH.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ESRRA-vs-GM12878-ESRRA-ENCFF762CTH.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETS1-vs-GM12878-ETS1-ENCFF368SVW.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETS1-vs-GM12878-ETS1-ENCFF368SVW.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6-vs-GM12878-ETV6-ENCFF342QUN.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETV6-vs-GM12878-ETV6-ENCFF342QUN.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6-vs-GM12878-ETV6-ENCFF655IXH.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETV6-vs-GM12878-ETV6-ENCFF655IXH.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOS-vs-GM12878-FOS-ENCFF949TIZ.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.FOS-vs-GM12878-FOS-ENCFF949TIZ.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOXM1-vs-GM12878-FOXM1-ENCFF114JXB.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.FOXM1-vs-GM12878-FOXM1-ENCFF114JXB.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF574ZEF.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF574ZEF.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF617GBZ.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF617GBZ.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF771RXX.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF771RXX.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HSF1-vs-GM12878-HSF1-ENCFF405WKK.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.HSF1-vs-GM12878-HSF1-ENCFF405WKK.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF448JWW.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF448JWW.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF468AOG.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF468AOG.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF786WSB.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF786WSB.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF2-vs-GM12878-IKZF2-ENCFF578YIW.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF2-vs-GM12878-IKZF2-ENCFF578YIW.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF2-vs-GM12878-IKZF2-ENCFF615CIJ.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF2-vs-GM12878-IKZF2-ENCFF615CIJ.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3-vs-GM12878-IRF3-ENCFF679UBZ.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF3-vs-GM12878-IRF3-ENCFF679UBZ.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3-vs-GM12878-IRF3-ENCFF692CUY.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF3-vs-GM12878-IRF3-ENCFF692CUY.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF4-vs-GM12878-IRF4-ENCFF271OQQ.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF4-vs-GM12878-IRF4-ENCFF271OQQ.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF5-vs-GM12878-IRF5-ENCFF095VAP.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF5-vs-GM12878-IRF5-ENCFF095VAP.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUNB-vs-GM12878-JUNB-ENCFF185LJE.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUNB-vs-GM12878-JUNB-ENCFF185LJE.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND-vs-GM12878-JUND-ENCFF738BAA.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUND-vs-GM12878-JUND-ENCFF738BAA.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND-vs-GM12878-JUND-ENCFF825BIG.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUND-vs-GM12878-JUND-ENCFF825BIG.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.KLF5-vs-GM12878-KLF5-ENCFF970MYF.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.KLF5-vs-GM12878-KLF5-ENCFF970MYF.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAFK-vs-GM12878-MAFK-ENCFF043DXF.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAFK-vs-GM12878-MAFK-ENCFF043DXF.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAX-vs-GM12878-MAX-ENCFF712UBB.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAX-vs-GM12878-MAX-ENCFF712UBB.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-GM12878-MAZ-ENCFF211WVL.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAZ-vs-GM12878-MAZ-ENCFF211WVL.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-GM12878-MAZ-ENCFF250FJC.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAZ-vs-GM12878-MAZ-ENCFF250FJC.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2A-vs-GM12878-MEF2A-ENCFF775DWU.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2A-vs-GM12878-MEF2A-ENCFF775DWU.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2B-vs-GM12878-MEF2B-ENCFF780AUS.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2B-vs-GM12878-MEF2B-ENCFF780AUS.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2C-vs-GM12878-MEF2C-ENCFF264GAB.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2C-vs-GM12878-MEF2C-ENCFF264GAB.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MXI1-vs-GM12878-MXI1-ENCFF638YSV.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MXI1-vs-GM12878-MXI1-ENCFF638YSV.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYB-vs-GM12878-MYB-ENCFF208DZU.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MYB-vs-GM12878-MYB-ENCFF208DZU.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYC-vs-GM12878-MYC-ENCFF765CKK.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MYC-vs-GM12878-MYC-ENCFF765CKK.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC1-vs-GM12878-NFATC1-ENCFF565HHF.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFATC1-vs-GM12878-NFATC1-ENCFF565HHF.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC3-vs-GM12878-NFATC3-ENCFF623PTQ.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFATC3-vs-GM12878-NFATC3-ENCFF623PTQ.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFE2-vs-GM12878-NFE2-ENCFF729STF.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFE2-vs-GM12878-NFE2-ENCFF729STF.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFE2-vs-GM12878-NFE2-ENCFF766ERZ.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFE2-vs-GM12878-NFE2-ENCFF766ERZ.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYA-vs-GM12878-NFYA-ENCFF339IEZ.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFYA-vs-GM12878-NFYA-ENCFF339IEZ.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYB-vs-GM12878-NFYB-ENCFF359ATR.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFYB-vs-GM12878-NFYB-ENCFF359ATR.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C1-vs-GM12878-NR2C1-ENCFF271VCD.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2C1-vs-GM12878-NR2C1-ENCFF271VCD.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C2-vs-GM12878-NR2C2-ENCFF735IUU.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2C2-vs-GM12878-NR2C2-ENCFF735IUU.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2F1-vs-GM12878-NR2F1-ENCFF118UKC.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2F1-vs-GM12878-NR2F1-ENCFF118UKC.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NRF1-vs-GM12878-NRF1-ENCFF864EBU.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NRF1-vs-GM12878-NRF1-ENCFF864EBU.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-GM12878-PAX5-ENCFF220BTT.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX5-vs-GM12878-PAX5-ENCFF220BTT.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-GM12878-PAX5-ENCFF395KJU.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX5-vs-GM12878-PAX5-ENCFF395KJU.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX8-vs-GM12878-PAX8-ENCFF630IVV.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX8-vs-GM12878-PAX8-ENCFF630IVV.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PBX3-vs-GM12878-PBX3-ENCFF236XCG.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PBX3-vs-GM12878-PBX3-ENCFF236XCG.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PKNOX1-vs-GM12878-PKNOX1-ENCFF205YWV.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PKNOX1-vs-GM12878-PKNOX1-ENCFF205YWV.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.POU2F2-vs-GM12878-POU2F2-ENCFF433TJX.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.POU2F2-vs-GM12878-POU2F2-ENCFF433TJX.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-GM12878-RELA-ENCFF074NZK.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELA-vs-GM12878-RELA-ENCFF074NZK.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-GM12878-RELA-ENCFF218OPP.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELA-vs-GM12878-RELA-ENCFF218OPP.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELB-vs-GM12878-RELB-ENCFF505WBU.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELB-vs-GM12878-RELB-ENCFF505WBU.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-GM12878-REST-ENCFF348LKE.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.REST-vs-GM12878-REST-ENCFF348LKE.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-GM12878-REST-ENCFF428QEI.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.REST-vs-GM12878-REST-ENCFF428QEI.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RFX5-vs-GM12878-RFX5-ENCFF914AYR.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RFX5-vs-GM12878-RFX5-ENCFF914AYR.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RUNX3-vs-GM12878-RUNX3-ENCFF965LJE.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RUNX3-vs-GM12878-RUNX3-ENCFF965LJE.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RXRA-vs-GM12878-RXRA-ENCFF575ZLF.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RXRA-vs-GM12878-RXRA-ENCFF575ZLF.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SIX5-vs-GM12878-SIX5-ENCFF175SNC.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SIX5-vs-GM12878-SIX5-ENCFF175SNC.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SMAD1-vs-GM12878-SMAD1-ENCFF510SOO.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SMAD1-vs-GM12878-SMAD1-ENCFF510SOO.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SPI1-vs-GM12878-SPI1-ENCFF881ARS.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SPI1-vs-GM12878-SPI1-ENCFF881ARS.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF1-vs-GM12878-SREBF1-ENCFF729QOZ.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SREBF1-vs-GM12878-SREBF1-ENCFF729QOZ.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF2-vs-GM12878-SREBF2-ENCFF272RZS.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SREBF2-vs-GM12878-SREBF2-ENCFF272RZS.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF276KPQ.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF276KPQ.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF489QRS.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF489QRS.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF836NXG.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF836NXG.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-GM12878-STAT1-ENCFF780PWT.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT1-vs-GM12878-STAT1-ENCFF780PWT.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-GM12878-STAT1-ENCFF973ACG.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT1-vs-GM12878-STAT1-ENCFF973ACG.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT3-vs-GM12878-STAT3-ENCFF719YDJ.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT3-vs-GM12878-STAT3-ENCFF719YDJ.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT5A-vs-GM12878-STAT5A-ENCFF543CUS.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT5A-vs-GM12878-STAT5A-ENCFF543CUS.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBP-vs-GM12878-TBP-ENCFF863HTV.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TBP-vs-GM12878-TBP-ENCFF863HTV.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBX21-vs-GM12878-TBX21-ENCFF655AWD.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TBX21-vs-GM12878-TBX21-ENCFF655AWD.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-GM12878-TCF12-ENCFF342RNH.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF12-vs-GM12878-TCF12-ENCFF342RNH.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-GM12878-TCF12-ENCFF429FHY.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF12-vs-GM12878-TCF12-ENCFF429FHY.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF3-vs-GM12878-TCF3-ENCFF235NCI.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF3-vs-GM12878-TCF3-ENCFF235NCI.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF7-vs-GM12878-TCF7-ENCFF918LSK.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF7-vs-GM12878-TCF7-ENCFF918LSK.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF1-vs-GM12878-USF1-ENCFF688QPS.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.USF1-vs-GM12878-USF1-ENCFF688QPS.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF2-vs-GM12878-USF2-ENCFF666GZL.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.USF2-vs-GM12878-USF2-ENCFF666GZL.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YBX1-vs-GM12878-YBX1-ENCFF249ZOW.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YBX1-vs-GM12878-YBX1-ENCFF249ZOW.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1-vs-GM12878-YY1-ENCFF247QYO.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YY1-vs-GM12878-YY1-ENCFF247QYO.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1-vs-GM12878-YY1-ENCFF320PLB.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YY1-vs-GM12878-YY1-ENCFF320PLB.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBED1-vs-GM12878-ZBED1-ENCFF802ODC.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBED1-vs-GM12878-ZBED1-ENCFF802ODC.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33-vs-GM12878-ZBTB33-ENCFF099ANS.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB33-vs-GM12878-ZBTB33-ENCFF099ANS.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33-vs-GM12878-ZBTB33-ENCFF550LPG.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB33-vs-GM12878-ZBTB33-ENCFF550LPG.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB4-vs-GM12878-ZBTB4-ENCFF273OXB.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB4-vs-GM12878-ZBTB4-ENCFF273OXB.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZEB1-vs-GM12878-ZEB1-ENCFF363BVO.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZEB1-vs-GM12878-ZEB1-ENCFF363BVO.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF384-vs-GM12878-ZNF384-ENCFF990JXT.100radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZNF384-vs-GM12878-ZNF384-ENCFF990JXT.100radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARID3A-vs-GM12878-ARID3A-ENCFF722RPZ.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ARID3A-vs-GM12878-ARID3A-ENCFF722RPZ.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARNT-vs-GM12878-ARNT-ENCFF320KXO.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ARNT-vs-GM12878-ARNT-ENCFF320KXO.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF092GMD.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF092GMD.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF527XHG.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF527XHG.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF549FQE.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF549FQE.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF3-vs-GM12878-ATF3-ENCFF126EBD.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ATF3-vs-GM12878-ATF3-ENCFF126EBD.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF7-vs-GM12878-ATF7-ENCFF467OPR.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ATF7-vs-GM12878-ATF7-ENCFF467OPR.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BACH1-vs-GM12878-BACH1-ENCFF784KPL.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BACH1-vs-GM12878-BACH1-ENCFF784KPL.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BATF-vs-GM12878-BATF-ENCFF523WHP.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BATF-vs-GM12878-BATF-ENCFF523WHP.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BCL11A-vs-GM12878-BCL11A-ENCFF837XAJ.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BCL11A-vs-GM12878-BCL11A-ENCFF837XAJ.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BHLHE40-vs-GM12878-BHLHE40-ENCFF599AUJ.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BHLHE40-vs-GM12878-BHLHE40-ENCFF599AUJ.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BHLHE40-vs-GM12878-BHLHE40-ENCFF620MJF.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BHLHE40-vs-GM12878-BHLHE40-ENCFF620MJF.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CBFB-vs-GM12878-CBFB-ENCFF514WCR.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CBFB-vs-GM12878-CBFB-ENCFF514WCR.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB-vs-GM12878-CEBPB-ENCFF156OCY.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPB-vs-GM12878-CEBPB-ENCFF156OCY.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB-vs-GM12878-CEBPB-ENCFF370CBN.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPB-vs-GM12878-CEBPB-ENCFF370CBN.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPZ-vs-GM12878-CEBPZ-ENCFF056CTQ.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPZ-vs-GM12878-CEBPZ-ENCFF056CTQ.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREB1-vs-GM12878-CREB1-ENCFF552YPB.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CREB1-vs-GM12878-CREB1-ENCFF552YPB.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREM-vs-GM12878-CREM-ENCFF186QPL.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CREM-vs-GM12878-CREM-ENCFF186QPL.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF017XLW.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF017XLW.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF258AFQ.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF258AFQ.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF592UDD.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF592UDD.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF796WRU.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF796WRU.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CUX1-vs-GM12878-CUX1-ENCFF781JQX.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CUX1-vs-GM12878-CUX1-ENCFF781JQX.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F4-vs-GM12878-E2F4-ENCFF629TVV.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E2F4-vs-GM12878-E2F4-ENCFF629TVV.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F8-vs-GM12878-E2F8-ENCFF898QHB.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E2F8-vs-GM12878-E2F8-ENCFF898QHB.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E4F1-vs-GM12878-E4F1-ENCFF673IUB.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E4F1-vs-GM12878-E4F1-ENCFF673IUB.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-GM12878-EBF1-ENCFF374TSP.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EBF1-vs-GM12878-EBF1-ENCFF374TSP.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-GM12878-EBF1-ENCFF450YTC.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EBF1-vs-GM12878-EBF1-ENCFF450YTC.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EGR1-vs-GM12878-EGR1-ENCFF795QXQ.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EGR1-vs-GM12878-EGR1-ENCFF795QXQ.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-GM12878-ELF1-ENCFF141OOG.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELF1-vs-GM12878-ELF1-ENCFF141OOG.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-GM12878-ELF1-ENCFF349IFX.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELF1-vs-GM12878-ELF1-ENCFF349IFX.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELK1-vs-GM12878-ELK1-ENCFF463JDP.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELK1-vs-GM12878-ELK1-ENCFF463JDP.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ESRRA-vs-GM12878-ESRRA-ENCFF762CTH.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ESRRA-vs-GM12878-ESRRA-ENCFF762CTH.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETS1-vs-GM12878-ETS1-ENCFF368SVW.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETS1-vs-GM12878-ETS1-ENCFF368SVW.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6-vs-GM12878-ETV6-ENCFF342QUN.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETV6-vs-GM12878-ETV6-ENCFF342QUN.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6-vs-GM12878-ETV6-ENCFF655IXH.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETV6-vs-GM12878-ETV6-ENCFF655IXH.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOS-vs-GM12878-FOS-ENCFF949TIZ.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.FOS-vs-GM12878-FOS-ENCFF949TIZ.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOXM1-vs-GM12878-FOXM1-ENCFF114JXB.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.FOXM1-vs-GM12878-FOXM1-ENCFF114JXB.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF574ZEF.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF574ZEF.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF617GBZ.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF617GBZ.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF771RXX.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF771RXX.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HSF1-vs-GM12878-HSF1-ENCFF405WKK.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.HSF1-vs-GM12878-HSF1-ENCFF405WKK.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF448JWW.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF448JWW.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF468AOG.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF468AOG.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF786WSB.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF786WSB.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF2-vs-GM12878-IKZF2-ENCFF578YIW.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF2-vs-GM12878-IKZF2-ENCFF578YIW.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF2-vs-GM12878-IKZF2-ENCFF615CIJ.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF2-vs-GM12878-IKZF2-ENCFF615CIJ.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3-vs-GM12878-IRF3-ENCFF679UBZ.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF3-vs-GM12878-IRF3-ENCFF679UBZ.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3-vs-GM12878-IRF3-ENCFF692CUY.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF3-vs-GM12878-IRF3-ENCFF692CUY.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF4-vs-GM12878-IRF4-ENCFF271OQQ.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF4-vs-GM12878-IRF4-ENCFF271OQQ.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF5-vs-GM12878-IRF5-ENCFF095VAP.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF5-vs-GM12878-IRF5-ENCFF095VAP.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUNB-vs-GM12878-JUNB-ENCFF185LJE.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUNB-vs-GM12878-JUNB-ENCFF185LJE.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND-vs-GM12878-JUND-ENCFF738BAA.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUND-vs-GM12878-JUND-ENCFF738BAA.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND-vs-GM12878-JUND-ENCFF825BIG.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUND-vs-GM12878-JUND-ENCFF825BIG.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.KLF5-vs-GM12878-KLF5-ENCFF970MYF.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.KLF5-vs-GM12878-KLF5-ENCFF970MYF.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAFK-vs-GM12878-MAFK-ENCFF043DXF.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAFK-vs-GM12878-MAFK-ENCFF043DXF.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAX-vs-GM12878-MAX-ENCFF712UBB.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAX-vs-GM12878-MAX-ENCFF712UBB.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-GM12878-MAZ-ENCFF211WVL.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAZ-vs-GM12878-MAZ-ENCFF211WVL.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-GM12878-MAZ-ENCFF250FJC.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAZ-vs-GM12878-MAZ-ENCFF250FJC.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2A-vs-GM12878-MEF2A-ENCFF775DWU.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2A-vs-GM12878-MEF2A-ENCFF775DWU.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2B-vs-GM12878-MEF2B-ENCFF780AUS.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2B-vs-GM12878-MEF2B-ENCFF780AUS.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2C-vs-GM12878-MEF2C-ENCFF264GAB.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2C-vs-GM12878-MEF2C-ENCFF264GAB.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MXI1-vs-GM12878-MXI1-ENCFF638YSV.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MXI1-vs-GM12878-MXI1-ENCFF638YSV.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYB-vs-GM12878-MYB-ENCFF208DZU.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MYB-vs-GM12878-MYB-ENCFF208DZU.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYC-vs-GM12878-MYC-ENCFF765CKK.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MYC-vs-GM12878-MYC-ENCFF765CKK.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC1-vs-GM12878-NFATC1-ENCFF565HHF.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFATC1-vs-GM12878-NFATC1-ENCFF565HHF.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC3-vs-GM12878-NFATC3-ENCFF623PTQ.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFATC3-vs-GM12878-NFATC3-ENCFF623PTQ.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFE2-vs-GM12878-NFE2-ENCFF729STF.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFE2-vs-GM12878-NFE2-ENCFF729STF.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFE2-vs-GM12878-NFE2-ENCFF766ERZ.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFE2-vs-GM12878-NFE2-ENCFF766ERZ.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYA-vs-GM12878-NFYA-ENCFF339IEZ.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFYA-vs-GM12878-NFYA-ENCFF339IEZ.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYB-vs-GM12878-NFYB-ENCFF359ATR.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFYB-vs-GM12878-NFYB-ENCFF359ATR.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C1-vs-GM12878-NR2C1-ENCFF271VCD.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2C1-vs-GM12878-NR2C1-ENCFF271VCD.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C2-vs-GM12878-NR2C2-ENCFF735IUU.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2C2-vs-GM12878-NR2C2-ENCFF735IUU.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2F1-vs-GM12878-NR2F1-ENCFF118UKC.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2F1-vs-GM12878-NR2F1-ENCFF118UKC.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NRF1-vs-GM12878-NRF1-ENCFF864EBU.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NRF1-vs-GM12878-NRF1-ENCFF864EBU.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-GM12878-PAX5-ENCFF220BTT.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX5-vs-GM12878-PAX5-ENCFF220BTT.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-GM12878-PAX5-ENCFF395KJU.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX5-vs-GM12878-PAX5-ENCFF395KJU.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX8-vs-GM12878-PAX8-ENCFF630IVV.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX8-vs-GM12878-PAX8-ENCFF630IVV.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PBX3-vs-GM12878-PBX3-ENCFF236XCG.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PBX3-vs-GM12878-PBX3-ENCFF236XCG.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PKNOX1-vs-GM12878-PKNOX1-ENCFF205YWV.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PKNOX1-vs-GM12878-PKNOX1-ENCFF205YWV.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.POU2F2-vs-GM12878-POU2F2-ENCFF433TJX.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.POU2F2-vs-GM12878-POU2F2-ENCFF433TJX.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-GM12878-RELA-ENCFF074NZK.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELA-vs-GM12878-RELA-ENCFF074NZK.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-GM12878-RELA-ENCFF218OPP.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELA-vs-GM12878-RELA-ENCFF218OPP.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELB-vs-GM12878-RELB-ENCFF505WBU.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELB-vs-GM12878-RELB-ENCFF505WBU.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-GM12878-REST-ENCFF348LKE.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.REST-vs-GM12878-REST-ENCFF348LKE.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-GM12878-REST-ENCFF428QEI.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.REST-vs-GM12878-REST-ENCFF428QEI.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RFX5-vs-GM12878-RFX5-ENCFF914AYR.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RFX5-vs-GM12878-RFX5-ENCFF914AYR.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RUNX3-vs-GM12878-RUNX3-ENCFF965LJE.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RUNX3-vs-GM12878-RUNX3-ENCFF965LJE.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RXRA-vs-GM12878-RXRA-ENCFF575ZLF.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RXRA-vs-GM12878-RXRA-ENCFF575ZLF.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SIX5-vs-GM12878-SIX5-ENCFF175SNC.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SIX5-vs-GM12878-SIX5-ENCFF175SNC.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SMAD1-vs-GM12878-SMAD1-ENCFF510SOO.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SMAD1-vs-GM12878-SMAD1-ENCFF510SOO.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SPI1-vs-GM12878-SPI1-ENCFF881ARS.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SPI1-vs-GM12878-SPI1-ENCFF881ARS.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF1-vs-GM12878-SREBF1-ENCFF729QOZ.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SREBF1-vs-GM12878-SREBF1-ENCFF729QOZ.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF2-vs-GM12878-SREBF2-ENCFF272RZS.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SREBF2-vs-GM12878-SREBF2-ENCFF272RZS.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF276KPQ.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF276KPQ.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF489QRS.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF489QRS.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF836NXG.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF836NXG.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-GM12878-STAT1-ENCFF780PWT.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT1-vs-GM12878-STAT1-ENCFF780PWT.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-GM12878-STAT1-ENCFF973ACG.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT1-vs-GM12878-STAT1-ENCFF973ACG.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT3-vs-GM12878-STAT3-ENCFF719YDJ.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT3-vs-GM12878-STAT3-ENCFF719YDJ.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT5A-vs-GM12878-STAT5A-ENCFF543CUS.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT5A-vs-GM12878-STAT5A-ENCFF543CUS.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBP-vs-GM12878-TBP-ENCFF863HTV.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TBP-vs-GM12878-TBP-ENCFF863HTV.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBX21-vs-GM12878-TBX21-ENCFF655AWD.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TBX21-vs-GM12878-TBX21-ENCFF655AWD.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-GM12878-TCF12-ENCFF342RNH.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF12-vs-GM12878-TCF12-ENCFF342RNH.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-GM12878-TCF12-ENCFF429FHY.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF12-vs-GM12878-TCF12-ENCFF429FHY.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF3-vs-GM12878-TCF3-ENCFF235NCI.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF3-vs-GM12878-TCF3-ENCFF235NCI.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF7-vs-GM12878-TCF7-ENCFF918LSK.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF7-vs-GM12878-TCF7-ENCFF918LSK.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF1-vs-GM12878-USF1-ENCFF688QPS.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.USF1-vs-GM12878-USF1-ENCFF688QPS.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF2-vs-GM12878-USF2-ENCFF666GZL.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.USF2-vs-GM12878-USF2-ENCFF666GZL.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YBX1-vs-GM12878-YBX1-ENCFF249ZOW.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YBX1-vs-GM12878-YBX1-ENCFF249ZOW.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1-vs-GM12878-YY1-ENCFF247QYO.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YY1-vs-GM12878-YY1-ENCFF247QYO.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1-vs-GM12878-YY1-ENCFF320PLB.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YY1-vs-GM12878-YY1-ENCFF320PLB.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBED1-vs-GM12878-ZBED1-ENCFF802ODC.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBED1-vs-GM12878-ZBED1-ENCFF802ODC.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33-vs-GM12878-ZBTB33-ENCFF099ANS.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB33-vs-GM12878-ZBTB33-ENCFF099ANS.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33-vs-GM12878-ZBTB33-ENCFF550LPG.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB33-vs-GM12878-ZBTB33-ENCFF550LPG.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB4-vs-GM12878-ZBTB4-ENCFF273OXB.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB4-vs-GM12878-ZBTB4-ENCFF273OXB.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZEB1-vs-GM12878-ZEB1-ENCFF363BVO.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZEB1-vs-GM12878-ZEB1-ENCFF363BVO.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF384-vs-GM12878-ZNF384-ENCFF990JXT.50radius_split.Q4 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZNF384-vs-GM12878-ZNF384-ENCFF990JXT.50radius_split.Q4.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARID3A-vs-GM12878-ARID3A-ENCFF722RPZ.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ARID3A-vs-GM12878-ARID3A-ENCFF722RPZ.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARNT-vs-GM12878-ARNT-ENCFF320KXO.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ARNT-vs-GM12878-ARNT-ENCFF320KXO.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF092GMD.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF092GMD.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF527XHG.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF527XHG.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF549FQE.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF549FQE.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF3-vs-GM12878-ATF3-ENCFF126EBD.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ATF3-vs-GM12878-ATF3-ENCFF126EBD.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF7-vs-GM12878-ATF7-ENCFF467OPR.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ATF7-vs-GM12878-ATF7-ENCFF467OPR.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BACH1-vs-GM12878-BACH1-ENCFF784KPL.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BACH1-vs-GM12878-BACH1-ENCFF784KPL.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BATF-vs-GM12878-BATF-ENCFF523WHP.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BATF-vs-GM12878-BATF-ENCFF523WHP.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BCL11A-vs-GM12878-BCL11A-ENCFF837XAJ.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BCL11A-vs-GM12878-BCL11A-ENCFF837XAJ.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BHLHE40-vs-GM12878-BHLHE40-ENCFF599AUJ.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BHLHE40-vs-GM12878-BHLHE40-ENCFF599AUJ.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BHLHE40-vs-GM12878-BHLHE40-ENCFF620MJF.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BHLHE40-vs-GM12878-BHLHE40-ENCFF620MJF.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CBFB-vs-GM12878-CBFB-ENCFF514WCR.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CBFB-vs-GM12878-CBFB-ENCFF514WCR.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB-vs-GM12878-CEBPB-ENCFF156OCY.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPB-vs-GM12878-CEBPB-ENCFF156OCY.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB-vs-GM12878-CEBPB-ENCFF370CBN.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPB-vs-GM12878-CEBPB-ENCFF370CBN.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPZ-vs-GM12878-CEBPZ-ENCFF056CTQ.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPZ-vs-GM12878-CEBPZ-ENCFF056CTQ.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREB1-vs-GM12878-CREB1-ENCFF552YPB.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CREB1-vs-GM12878-CREB1-ENCFF552YPB.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREM-vs-GM12878-CREM-ENCFF186QPL.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CREM-vs-GM12878-CREM-ENCFF186QPL.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF017XLW.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF017XLW.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF258AFQ.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF258AFQ.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF592UDD.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF592UDD.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF796WRU.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF796WRU.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CUX1-vs-GM12878-CUX1-ENCFF781JQX.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CUX1-vs-GM12878-CUX1-ENCFF781JQX.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F4-vs-GM12878-E2F4-ENCFF629TVV.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E2F4-vs-GM12878-E2F4-ENCFF629TVV.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F8-vs-GM12878-E2F8-ENCFF898QHB.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E2F8-vs-GM12878-E2F8-ENCFF898QHB.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E4F1-vs-GM12878-E4F1-ENCFF673IUB.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E4F1-vs-GM12878-E4F1-ENCFF673IUB.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-GM12878-EBF1-ENCFF374TSP.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EBF1-vs-GM12878-EBF1-ENCFF374TSP.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-GM12878-EBF1-ENCFF450YTC.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EBF1-vs-GM12878-EBF1-ENCFF450YTC.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EGR1-vs-GM12878-EGR1-ENCFF795QXQ.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EGR1-vs-GM12878-EGR1-ENCFF795QXQ.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-GM12878-ELF1-ENCFF141OOG.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELF1-vs-GM12878-ELF1-ENCFF141OOG.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-GM12878-ELF1-ENCFF349IFX.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELF1-vs-GM12878-ELF1-ENCFF349IFX.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELK1-vs-GM12878-ELK1-ENCFF463JDP.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELK1-vs-GM12878-ELK1-ENCFF463JDP.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ESRRA-vs-GM12878-ESRRA-ENCFF762CTH.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ESRRA-vs-GM12878-ESRRA-ENCFF762CTH.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETS1-vs-GM12878-ETS1-ENCFF368SVW.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETS1-vs-GM12878-ETS1-ENCFF368SVW.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6-vs-GM12878-ETV6-ENCFF342QUN.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETV6-vs-GM12878-ETV6-ENCFF342QUN.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6-vs-GM12878-ETV6-ENCFF655IXH.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETV6-vs-GM12878-ETV6-ENCFF655IXH.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOS-vs-GM12878-FOS-ENCFF949TIZ.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.FOS-vs-GM12878-FOS-ENCFF949TIZ.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOXM1-vs-GM12878-FOXM1-ENCFF114JXB.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.FOXM1-vs-GM12878-FOXM1-ENCFF114JXB.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF574ZEF.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF574ZEF.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF617GBZ.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF617GBZ.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF771RXX.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF771RXX.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HSF1-vs-GM12878-HSF1-ENCFF405WKK.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.HSF1-vs-GM12878-HSF1-ENCFF405WKK.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF448JWW.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF448JWW.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF468AOG.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF468AOG.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF786WSB.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF786WSB.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF2-vs-GM12878-IKZF2-ENCFF578YIW.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF2-vs-GM12878-IKZF2-ENCFF578YIW.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF2-vs-GM12878-IKZF2-ENCFF615CIJ.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF2-vs-GM12878-IKZF2-ENCFF615CIJ.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3-vs-GM12878-IRF3-ENCFF679UBZ.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF3-vs-GM12878-IRF3-ENCFF679UBZ.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3-vs-GM12878-IRF3-ENCFF692CUY.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF3-vs-GM12878-IRF3-ENCFF692CUY.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF4-vs-GM12878-IRF4-ENCFF271OQQ.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF4-vs-GM12878-IRF4-ENCFF271OQQ.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF5-vs-GM12878-IRF5-ENCFF095VAP.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF5-vs-GM12878-IRF5-ENCFF095VAP.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUNB-vs-GM12878-JUNB-ENCFF185LJE.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUNB-vs-GM12878-JUNB-ENCFF185LJE.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND-vs-GM12878-JUND-ENCFF738BAA.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUND-vs-GM12878-JUND-ENCFF738BAA.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND-vs-GM12878-JUND-ENCFF825BIG.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUND-vs-GM12878-JUND-ENCFF825BIG.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.KLF5-vs-GM12878-KLF5-ENCFF970MYF.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.KLF5-vs-GM12878-KLF5-ENCFF970MYF.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAFK-vs-GM12878-MAFK-ENCFF043DXF.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAFK-vs-GM12878-MAFK-ENCFF043DXF.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAX-vs-GM12878-MAX-ENCFF712UBB.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAX-vs-GM12878-MAX-ENCFF712UBB.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-GM12878-MAZ-ENCFF211WVL.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAZ-vs-GM12878-MAZ-ENCFF211WVL.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-GM12878-MAZ-ENCFF250FJC.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAZ-vs-GM12878-MAZ-ENCFF250FJC.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2A-vs-GM12878-MEF2A-ENCFF775DWU.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2A-vs-GM12878-MEF2A-ENCFF775DWU.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2B-vs-GM12878-MEF2B-ENCFF780AUS.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2B-vs-GM12878-MEF2B-ENCFF780AUS.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2C-vs-GM12878-MEF2C-ENCFF264GAB.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2C-vs-GM12878-MEF2C-ENCFF264GAB.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MXI1-vs-GM12878-MXI1-ENCFF638YSV.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MXI1-vs-GM12878-MXI1-ENCFF638YSV.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYB-vs-GM12878-MYB-ENCFF208DZU.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MYB-vs-GM12878-MYB-ENCFF208DZU.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYC-vs-GM12878-MYC-ENCFF765CKK.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MYC-vs-GM12878-MYC-ENCFF765CKK.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC1-vs-GM12878-NFATC1-ENCFF565HHF.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFATC1-vs-GM12878-NFATC1-ENCFF565HHF.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC3-vs-GM12878-NFATC3-ENCFF623PTQ.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFATC3-vs-GM12878-NFATC3-ENCFF623PTQ.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFE2-vs-GM12878-NFE2-ENCFF729STF.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFE2-vs-GM12878-NFE2-ENCFF729STF.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFE2-vs-GM12878-NFE2-ENCFF766ERZ.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFE2-vs-GM12878-NFE2-ENCFF766ERZ.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYA-vs-GM12878-NFYA-ENCFF339IEZ.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFYA-vs-GM12878-NFYA-ENCFF339IEZ.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYB-vs-GM12878-NFYB-ENCFF359ATR.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFYB-vs-GM12878-NFYB-ENCFF359ATR.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C1-vs-GM12878-NR2C1-ENCFF271VCD.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2C1-vs-GM12878-NR2C1-ENCFF271VCD.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C2-vs-GM12878-NR2C2-ENCFF735IUU.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2C2-vs-GM12878-NR2C2-ENCFF735IUU.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2F1-vs-GM12878-NR2F1-ENCFF118UKC.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2F1-vs-GM12878-NR2F1-ENCFF118UKC.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NRF1-vs-GM12878-NRF1-ENCFF864EBU.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NRF1-vs-GM12878-NRF1-ENCFF864EBU.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-GM12878-PAX5-ENCFF220BTT.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX5-vs-GM12878-PAX5-ENCFF220BTT.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-GM12878-PAX5-ENCFF395KJU.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX5-vs-GM12878-PAX5-ENCFF395KJU.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX8-vs-GM12878-PAX8-ENCFF630IVV.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX8-vs-GM12878-PAX8-ENCFF630IVV.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PBX3-vs-GM12878-PBX3-ENCFF236XCG.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PBX3-vs-GM12878-PBX3-ENCFF236XCG.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PKNOX1-vs-GM12878-PKNOX1-ENCFF205YWV.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PKNOX1-vs-GM12878-PKNOX1-ENCFF205YWV.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.POU2F2-vs-GM12878-POU2F2-ENCFF433TJX.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.POU2F2-vs-GM12878-POU2F2-ENCFF433TJX.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-GM12878-RELA-ENCFF074NZK.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELA-vs-GM12878-RELA-ENCFF074NZK.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-GM12878-RELA-ENCFF218OPP.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELA-vs-GM12878-RELA-ENCFF218OPP.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELB-vs-GM12878-RELB-ENCFF505WBU.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELB-vs-GM12878-RELB-ENCFF505WBU.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-GM12878-REST-ENCFF348LKE.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.REST-vs-GM12878-REST-ENCFF348LKE.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-GM12878-REST-ENCFF428QEI.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.REST-vs-GM12878-REST-ENCFF428QEI.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RFX5-vs-GM12878-RFX5-ENCFF914AYR.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RFX5-vs-GM12878-RFX5-ENCFF914AYR.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RUNX3-vs-GM12878-RUNX3-ENCFF965LJE.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RUNX3-vs-GM12878-RUNX3-ENCFF965LJE.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RXRA-vs-GM12878-RXRA-ENCFF575ZLF.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RXRA-vs-GM12878-RXRA-ENCFF575ZLF.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SIX5-vs-GM12878-SIX5-ENCFF175SNC.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SIX5-vs-GM12878-SIX5-ENCFF175SNC.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SMAD1-vs-GM12878-SMAD1-ENCFF510SOO.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SMAD1-vs-GM12878-SMAD1-ENCFF510SOO.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SPI1-vs-GM12878-SPI1-ENCFF881ARS.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SPI1-vs-GM12878-SPI1-ENCFF881ARS.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF1-vs-GM12878-SREBF1-ENCFF729QOZ.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SREBF1-vs-GM12878-SREBF1-ENCFF729QOZ.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF2-vs-GM12878-SREBF2-ENCFF272RZS.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SREBF2-vs-GM12878-SREBF2-ENCFF272RZS.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF276KPQ.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF276KPQ.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF489QRS.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF489QRS.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF836NXG.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF836NXG.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-GM12878-STAT1-ENCFF780PWT.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT1-vs-GM12878-STAT1-ENCFF780PWT.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-GM12878-STAT1-ENCFF973ACG.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT1-vs-GM12878-STAT1-ENCFF973ACG.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT3-vs-GM12878-STAT3-ENCFF719YDJ.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT3-vs-GM12878-STAT3-ENCFF719YDJ.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT5A-vs-GM12878-STAT5A-ENCFF543CUS.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT5A-vs-GM12878-STAT5A-ENCFF543CUS.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBP-vs-GM12878-TBP-ENCFF863HTV.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TBP-vs-GM12878-TBP-ENCFF863HTV.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBX21-vs-GM12878-TBX21-ENCFF655AWD.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TBX21-vs-GM12878-TBX21-ENCFF655AWD.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-GM12878-TCF12-ENCFF342RNH.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF12-vs-GM12878-TCF12-ENCFF342RNH.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-GM12878-TCF12-ENCFF429FHY.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF12-vs-GM12878-TCF12-ENCFF429FHY.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF3-vs-GM12878-TCF3-ENCFF235NCI.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF3-vs-GM12878-TCF3-ENCFF235NCI.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF7-vs-GM12878-TCF7-ENCFF918LSK.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF7-vs-GM12878-TCF7-ENCFF918LSK.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF1-vs-GM12878-USF1-ENCFF688QPS.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.USF1-vs-GM12878-USF1-ENCFF688QPS.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF2-vs-GM12878-USF2-ENCFF666GZL.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.USF2-vs-GM12878-USF2-ENCFF666GZL.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YBX1-vs-GM12878-YBX1-ENCFF249ZOW.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YBX1-vs-GM12878-YBX1-ENCFF249ZOW.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1-vs-GM12878-YY1-ENCFF247QYO.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YY1-vs-GM12878-YY1-ENCFF247QYO.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1-vs-GM12878-YY1-ENCFF320PLB.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YY1-vs-GM12878-YY1-ENCFF320PLB.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBED1-vs-GM12878-ZBED1-ENCFF802ODC.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBED1-vs-GM12878-ZBED1-ENCFF802ODC.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33-vs-GM12878-ZBTB33-ENCFF099ANS.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB33-vs-GM12878-ZBTB33-ENCFF099ANS.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33-vs-GM12878-ZBTB33-ENCFF550LPG.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB33-vs-GM12878-ZBTB33-ENCFF550LPG.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB4-vs-GM12878-ZBTB4-ENCFF273OXB.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB4-vs-GM12878-ZBTB4-ENCFF273OXB.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZEB1-vs-GM12878-ZEB1-ENCFF363BVO.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZEB1-vs-GM12878-ZEB1-ENCFF363BVO.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF384-vs-GM12878-ZNF384-ENCFF990JXT.100radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZNF384-vs-GM12878-ZNF384-ENCFF990JXT.100radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARID3A-vs-GM12878-ARID3A-ENCFF722RPZ.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ARID3A-vs-GM12878-ARID3A-ENCFF722RPZ.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARNT-vs-GM12878-ARNT-ENCFF320KXO.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ARNT-vs-GM12878-ARNT-ENCFF320KXO.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF092GMD.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF092GMD.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF527XHG.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF527XHG.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF549FQE.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ASH2L-vs-GM12878-ASH2L-ENCFF549FQE.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF3-vs-GM12878-ATF3-ENCFF126EBD.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ATF3-vs-GM12878-ATF3-ENCFF126EBD.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF7-vs-GM12878-ATF7-ENCFF467OPR.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ATF7-vs-GM12878-ATF7-ENCFF467OPR.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BACH1-vs-GM12878-BACH1-ENCFF784KPL.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BACH1-vs-GM12878-BACH1-ENCFF784KPL.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BATF-vs-GM12878-BATF-ENCFF523WHP.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BATF-vs-GM12878-BATF-ENCFF523WHP.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BCL11A-vs-GM12878-BCL11A-ENCFF837XAJ.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BCL11A-vs-GM12878-BCL11A-ENCFF837XAJ.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BHLHE40-vs-GM12878-BHLHE40-ENCFF599AUJ.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BHLHE40-vs-GM12878-BHLHE40-ENCFF599AUJ.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BHLHE40-vs-GM12878-BHLHE40-ENCFF620MJF.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.BHLHE40-vs-GM12878-BHLHE40-ENCFF620MJF.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CBFB-vs-GM12878-CBFB-ENCFF514WCR.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CBFB-vs-GM12878-CBFB-ENCFF514WCR.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB-vs-GM12878-CEBPB-ENCFF156OCY.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPB-vs-GM12878-CEBPB-ENCFF156OCY.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB-vs-GM12878-CEBPB-ENCFF370CBN.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPB-vs-GM12878-CEBPB-ENCFF370CBN.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPZ-vs-GM12878-CEBPZ-ENCFF056CTQ.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CEBPZ-vs-GM12878-CEBPZ-ENCFF056CTQ.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREB1-vs-GM12878-CREB1-ENCFF552YPB.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CREB1-vs-GM12878-CREB1-ENCFF552YPB.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREM-vs-GM12878-CREM-ENCFF186QPL.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CREM-vs-GM12878-CREM-ENCFF186QPL.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF017XLW.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF017XLW.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF258AFQ.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF258AFQ.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF592UDD.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF592UDD.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF796WRU.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CTCF-vs-GM12878-CTCF-ENCFF796WRU.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CUX1-vs-GM12878-CUX1-ENCFF781JQX.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.CUX1-vs-GM12878-CUX1-ENCFF781JQX.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F4-vs-GM12878-E2F4-ENCFF629TVV.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E2F4-vs-GM12878-E2F4-ENCFF629TVV.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F8-vs-GM12878-E2F8-ENCFF898QHB.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E2F8-vs-GM12878-E2F8-ENCFF898QHB.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E4F1-vs-GM12878-E4F1-ENCFF673IUB.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.E4F1-vs-GM12878-E4F1-ENCFF673IUB.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-GM12878-EBF1-ENCFF374TSP.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EBF1-vs-GM12878-EBF1-ENCFF374TSP.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-GM12878-EBF1-ENCFF450YTC.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EBF1-vs-GM12878-EBF1-ENCFF450YTC.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EGR1-vs-GM12878-EGR1-ENCFF795QXQ.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.EGR1-vs-GM12878-EGR1-ENCFF795QXQ.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-GM12878-ELF1-ENCFF141OOG.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELF1-vs-GM12878-ELF1-ENCFF141OOG.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-GM12878-ELF1-ENCFF349IFX.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELF1-vs-GM12878-ELF1-ENCFF349IFX.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELK1-vs-GM12878-ELK1-ENCFF463JDP.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ELK1-vs-GM12878-ELK1-ENCFF463JDP.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ESRRA-vs-GM12878-ESRRA-ENCFF762CTH.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ESRRA-vs-GM12878-ESRRA-ENCFF762CTH.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETS1-vs-GM12878-ETS1-ENCFF368SVW.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETS1-vs-GM12878-ETS1-ENCFF368SVW.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6-vs-GM12878-ETV6-ENCFF342QUN.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETV6-vs-GM12878-ETV6-ENCFF342QUN.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6-vs-GM12878-ETV6-ENCFF655IXH.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ETV6-vs-GM12878-ETV6-ENCFF655IXH.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOS-vs-GM12878-FOS-ENCFF949TIZ.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.FOS-vs-GM12878-FOS-ENCFF949TIZ.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOXM1-vs-GM12878-FOXM1-ENCFF114JXB.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.FOXM1-vs-GM12878-FOXM1-ENCFF114JXB.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF574ZEF.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF574ZEF.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF617GBZ.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF617GBZ.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF771RXX.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.GABPA-vs-GM12878-GABPA-ENCFF771RXX.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HSF1-vs-GM12878-HSF1-ENCFF405WKK.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.HSF1-vs-GM12878-HSF1-ENCFF405WKK.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF448JWW.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF448JWW.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF468AOG.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF468AOG.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF786WSB.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF1-vs-GM12878-IKZF1-ENCFF786WSB.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF2-vs-GM12878-IKZF2-ENCFF578YIW.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF2-vs-GM12878-IKZF2-ENCFF578YIW.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF2-vs-GM12878-IKZF2-ENCFF615CIJ.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IKZF2-vs-GM12878-IKZF2-ENCFF615CIJ.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3-vs-GM12878-IRF3-ENCFF679UBZ.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF3-vs-GM12878-IRF3-ENCFF679UBZ.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3-vs-GM12878-IRF3-ENCFF692CUY.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF3-vs-GM12878-IRF3-ENCFF692CUY.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF4-vs-GM12878-IRF4-ENCFF271OQQ.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF4-vs-GM12878-IRF4-ENCFF271OQQ.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF5-vs-GM12878-IRF5-ENCFF095VAP.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.IRF5-vs-GM12878-IRF5-ENCFF095VAP.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUNB-vs-GM12878-JUNB-ENCFF185LJE.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUNB-vs-GM12878-JUNB-ENCFF185LJE.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND-vs-GM12878-JUND-ENCFF738BAA.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUND-vs-GM12878-JUND-ENCFF738BAA.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND-vs-GM12878-JUND-ENCFF825BIG.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.JUND-vs-GM12878-JUND-ENCFF825BIG.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.KLF5-vs-GM12878-KLF5-ENCFF970MYF.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.KLF5-vs-GM12878-KLF5-ENCFF970MYF.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAFK-vs-GM12878-MAFK-ENCFF043DXF.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAFK-vs-GM12878-MAFK-ENCFF043DXF.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAX-vs-GM12878-MAX-ENCFF712UBB.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAX-vs-GM12878-MAX-ENCFF712UBB.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-GM12878-MAZ-ENCFF211WVL.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAZ-vs-GM12878-MAZ-ENCFF211WVL.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-GM12878-MAZ-ENCFF250FJC.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MAZ-vs-GM12878-MAZ-ENCFF250FJC.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2A-vs-GM12878-MEF2A-ENCFF775DWU.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2A-vs-GM12878-MEF2A-ENCFF775DWU.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2B-vs-GM12878-MEF2B-ENCFF780AUS.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2B-vs-GM12878-MEF2B-ENCFF780AUS.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2C-vs-GM12878-MEF2C-ENCFF264GAB.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MEF2C-vs-GM12878-MEF2C-ENCFF264GAB.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MXI1-vs-GM12878-MXI1-ENCFF638YSV.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MXI1-vs-GM12878-MXI1-ENCFF638YSV.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYB-vs-GM12878-MYB-ENCFF208DZU.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MYB-vs-GM12878-MYB-ENCFF208DZU.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYC-vs-GM12878-MYC-ENCFF765CKK.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.MYC-vs-GM12878-MYC-ENCFF765CKK.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC1-vs-GM12878-NFATC1-ENCFF565HHF.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFATC1-vs-GM12878-NFATC1-ENCFF565HHF.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC3-vs-GM12878-NFATC3-ENCFF623PTQ.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFATC3-vs-GM12878-NFATC3-ENCFF623PTQ.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFE2-vs-GM12878-NFE2-ENCFF729STF.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFE2-vs-GM12878-NFE2-ENCFF729STF.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFE2-vs-GM12878-NFE2-ENCFF766ERZ.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFE2-vs-GM12878-NFE2-ENCFF766ERZ.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYA-vs-GM12878-NFYA-ENCFF339IEZ.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFYA-vs-GM12878-NFYA-ENCFF339IEZ.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYB-vs-GM12878-NFYB-ENCFF359ATR.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NFYB-vs-GM12878-NFYB-ENCFF359ATR.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C1-vs-GM12878-NR2C1-ENCFF271VCD.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2C1-vs-GM12878-NR2C1-ENCFF271VCD.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C2-vs-GM12878-NR2C2-ENCFF735IUU.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2C2-vs-GM12878-NR2C2-ENCFF735IUU.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2F1-vs-GM12878-NR2F1-ENCFF118UKC.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NR2F1-vs-GM12878-NR2F1-ENCFF118UKC.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NRF1-vs-GM12878-NRF1-ENCFF864EBU.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.NRF1-vs-GM12878-NRF1-ENCFF864EBU.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-GM12878-PAX5-ENCFF220BTT.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX5-vs-GM12878-PAX5-ENCFF220BTT.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-GM12878-PAX5-ENCFF395KJU.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX5-vs-GM12878-PAX5-ENCFF395KJU.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX8-vs-GM12878-PAX8-ENCFF630IVV.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PAX8-vs-GM12878-PAX8-ENCFF630IVV.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PBX3-vs-GM12878-PBX3-ENCFF236XCG.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PBX3-vs-GM12878-PBX3-ENCFF236XCG.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PKNOX1-vs-GM12878-PKNOX1-ENCFF205YWV.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.PKNOX1-vs-GM12878-PKNOX1-ENCFF205YWV.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.POU2F2-vs-GM12878-POU2F2-ENCFF433TJX.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.POU2F2-vs-GM12878-POU2F2-ENCFF433TJX.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-GM12878-RELA-ENCFF074NZK.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELA-vs-GM12878-RELA-ENCFF074NZK.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-GM12878-RELA-ENCFF218OPP.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELA-vs-GM12878-RELA-ENCFF218OPP.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELB-vs-GM12878-RELB-ENCFF505WBU.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RELB-vs-GM12878-RELB-ENCFF505WBU.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-GM12878-REST-ENCFF348LKE.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.REST-vs-GM12878-REST-ENCFF348LKE.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-GM12878-REST-ENCFF428QEI.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.REST-vs-GM12878-REST-ENCFF428QEI.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RFX5-vs-GM12878-RFX5-ENCFF914AYR.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RFX5-vs-GM12878-RFX5-ENCFF914AYR.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RUNX3-vs-GM12878-RUNX3-ENCFF965LJE.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RUNX3-vs-GM12878-RUNX3-ENCFF965LJE.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RXRA-vs-GM12878-RXRA-ENCFF575ZLF.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.RXRA-vs-GM12878-RXRA-ENCFF575ZLF.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SIX5-vs-GM12878-SIX5-ENCFF175SNC.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SIX5-vs-GM12878-SIX5-ENCFF175SNC.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SMAD1-vs-GM12878-SMAD1-ENCFF510SOO.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SMAD1-vs-GM12878-SMAD1-ENCFF510SOO.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SPI1-vs-GM12878-SPI1-ENCFF881ARS.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SPI1-vs-GM12878-SPI1-ENCFF881ARS.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF1-vs-GM12878-SREBF1-ENCFF729QOZ.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SREBF1-vs-GM12878-SREBF1-ENCFF729QOZ.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF2-vs-GM12878-SREBF2-ENCFF272RZS.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SREBF2-vs-GM12878-SREBF2-ENCFF272RZS.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF276KPQ.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF276KPQ.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF489QRS.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF489QRS.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF836NXG.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.SRF-vs-GM12878-SRF-ENCFF836NXG.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-GM12878-STAT1-ENCFF780PWT.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT1-vs-GM12878-STAT1-ENCFF780PWT.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-GM12878-STAT1-ENCFF973ACG.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT1-vs-GM12878-STAT1-ENCFF973ACG.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT3-vs-GM12878-STAT3-ENCFF719YDJ.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT3-vs-GM12878-STAT3-ENCFF719YDJ.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT5A-vs-GM12878-STAT5A-ENCFF543CUS.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.STAT5A-vs-GM12878-STAT5A-ENCFF543CUS.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBP-vs-GM12878-TBP-ENCFF863HTV.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TBP-vs-GM12878-TBP-ENCFF863HTV.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBX21-vs-GM12878-TBX21-ENCFF655AWD.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TBX21-vs-GM12878-TBX21-ENCFF655AWD.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-GM12878-TCF12-ENCFF342RNH.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF12-vs-GM12878-TCF12-ENCFF342RNH.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-GM12878-TCF12-ENCFF429FHY.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF12-vs-GM12878-TCF12-ENCFF429FHY.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF3-vs-GM12878-TCF3-ENCFF235NCI.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF3-vs-GM12878-TCF3-ENCFF235NCI.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF7-vs-GM12878-TCF7-ENCFF918LSK.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.TCF7-vs-GM12878-TCF7-ENCFF918LSK.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF1-vs-GM12878-USF1-ENCFF688QPS.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.USF1-vs-GM12878-USF1-ENCFF688QPS.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF2-vs-GM12878-USF2-ENCFF666GZL.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.USF2-vs-GM12878-USF2-ENCFF666GZL.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YBX1-vs-GM12878-YBX1-ENCFF249ZOW.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YBX1-vs-GM12878-YBX1-ENCFF249ZOW.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1-vs-GM12878-YY1-ENCFF247QYO.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YY1-vs-GM12878-YY1-ENCFF247QYO.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1-vs-GM12878-YY1-ENCFF320PLB.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.YY1-vs-GM12878-YY1-ENCFF320PLB.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBED1-vs-GM12878-ZBED1-ENCFF802ODC.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBED1-vs-GM12878-ZBED1-ENCFF802ODC.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33-vs-GM12878-ZBTB33-ENCFF099ANS.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB33-vs-GM12878-ZBTB33-ENCFF099ANS.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33-vs-GM12878-ZBTB33-ENCFF550LPG.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB33-vs-GM12878-ZBTB33-ENCFF550LPG.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB4-vs-GM12878-ZBTB4-ENCFF273OXB.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZBTB4-vs-GM12878-ZBTB4-ENCFF273OXB.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZEB1-vs-GM12878-ZEB1-ENCFF363BVO.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZEB1-vs-GM12878-ZEB1-ENCFF363BVO.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF384-vs-GM12878-ZNF384-ENCFF990JXT.50radius_split.Q5 13 14 16 500 1 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress/L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress/L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress/L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress/L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress/L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress/L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress/L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz,/oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress/L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg38_CHH.bedGraph.gz FIMO.ZNF384-vs-GM12878-ZNF384-ENCFF990JXT.50radius_split.Q5.profile-GM12878-pooled -bismark.cov -minCov 10