python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARID3A.gz 2 GM12878-peak-calls/GM12878-ARID3A-ENCFF722RPZ.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARID3A-vs-GM12878-ARID3A-ENCFF722RPZ
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARNT.gz 2 GM12878-peak-calls/GM12878-ARNT-ENCFF320KXO.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARNT-vs-GM12878-ARNT-ENCFF320KXO
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L.gz 2 GM12878-peak-calls/GM12878-ASH2L-ENCFF092GMD.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF092GMD
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L.gz 2 GM12878-peak-calls/GM12878-ASH2L-ENCFF527XHG.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF527XHG
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L.gz 2 GM12878-peak-calls/GM12878-ASH2L-ENCFF549FQE.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L-vs-GM12878-ASH2L-ENCFF549FQE
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF3.gz 2 GM12878-peak-calls/GM12878-ATF3-ENCFF126EBD.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF3-vs-GM12878-ATF3-ENCFF126EBD
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF7.gz 2 GM12878-peak-calls/GM12878-ATF7-ENCFF467OPR.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF7-vs-GM12878-ATF7-ENCFF467OPR
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BACH1.gz 2 GM12878-peak-calls/GM12878-BACH1-ENCFF784KPL.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BACH1-vs-GM12878-BACH1-ENCFF784KPL
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BATF.gz 2 GM12878-peak-calls/GM12878-BATF-ENCFF523WHP.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BATF-vs-GM12878-BATF-ENCFF523WHP
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BCL11A.gz 2 GM12878-peak-calls/GM12878-BCL11A-ENCFF837XAJ.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BCL11A-vs-GM12878-BCL11A-ENCFF837XAJ
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BHLHE40.gz 2 GM12878-peak-calls/GM12878-BHLHE40-ENCFF599AUJ.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BHLHE40-vs-GM12878-BHLHE40-ENCFF599AUJ
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BHLHE40.gz 2 GM12878-peak-calls/GM12878-BHLHE40-ENCFF620MJF.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BHLHE40-vs-GM12878-BHLHE40-ENCFF620MJF
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CBFB.gz 2 GM12878-peak-calls/GM12878-CBFB-ENCFF514WCR.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CBFB-vs-GM12878-CBFB-ENCFF514WCR
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB.gz 2 GM12878-peak-calls/GM12878-CEBPB-ENCFF156OCY.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB-vs-GM12878-CEBPB-ENCFF156OCY
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB.gz 2 GM12878-peak-calls/GM12878-CEBPB-ENCFF370CBN.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB-vs-GM12878-CEBPB-ENCFF370CBN
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPZ.gz 2 GM12878-peak-calls/GM12878-CEBPZ-ENCFF056CTQ.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPZ-vs-GM12878-CEBPZ-ENCFF056CTQ
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREB1.gz 2 GM12878-peak-calls/GM12878-CREB1-ENCFF552YPB.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREB1-vs-GM12878-CREB1-ENCFF552YPB
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREM.gz 2 GM12878-peak-calls/GM12878-CREM-ENCFF186QPL.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREM-vs-GM12878-CREM-ENCFF186QPL
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF.gz 2 GM12878-peak-calls/GM12878-CTCF-ENCFF017XLW.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF017XLW
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF.gz 2 GM12878-peak-calls/GM12878-CTCF-ENCFF258AFQ.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF258AFQ
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF.gz 2 GM12878-peak-calls/GM12878-CTCF-ENCFF592UDD.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF592UDD
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF.gz 2 GM12878-peak-calls/GM12878-CTCF-ENCFF796WRU.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF796WRU
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CUX1.gz 2 GM12878-peak-calls/GM12878-CUX1-ENCFF781JQX.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CUX1-vs-GM12878-CUX1-ENCFF781JQX
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F4.gz 2 GM12878-peak-calls/GM12878-E2F4-ENCFF629TVV.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F4-vs-GM12878-E2F4-ENCFF629TVV
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F8.gz 2 GM12878-peak-calls/GM12878-E2F8-ENCFF898QHB.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F8-vs-GM12878-E2F8-ENCFF898QHB
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E4F1.gz 2 GM12878-peak-calls/GM12878-E4F1-ENCFF673IUB.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E4F1-vs-GM12878-E4F1-ENCFF673IUB
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1.gz 2 GM12878-peak-calls/GM12878-EBF1-ENCFF374TSP.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-GM12878-EBF1-ENCFF374TSP
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1.gz 2 GM12878-peak-calls/GM12878-EBF1-ENCFF450YTC.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-GM12878-EBF1-ENCFF450YTC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EGR1.gz 2 GM12878-peak-calls/GM12878-EGR1-ENCFF795QXQ.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EGR1-vs-GM12878-EGR1-ENCFF795QXQ
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1.gz 2 GM12878-peak-calls/GM12878-ELF1-ENCFF141OOG.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-GM12878-ELF1-ENCFF141OOG
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1.gz 2 GM12878-peak-calls/GM12878-ELF1-ENCFF349IFX.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-GM12878-ELF1-ENCFF349IFX
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELK1.gz 2 GM12878-peak-calls/GM12878-ELK1-ENCFF463JDP.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELK1-vs-GM12878-ELK1-ENCFF463JDP
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ESRRA.gz 2 GM12878-peak-calls/GM12878-ESRRA-ENCFF762CTH.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ESRRA-vs-GM12878-ESRRA-ENCFF762CTH
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETS1.gz 2 GM12878-peak-calls/GM12878-ETS1-ENCFF368SVW.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETS1-vs-GM12878-ETS1-ENCFF368SVW
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6.gz 2 GM12878-peak-calls/GM12878-ETV6-ENCFF342QUN.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6-vs-GM12878-ETV6-ENCFF342QUN
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6.gz 2 GM12878-peak-calls/GM12878-ETV6-ENCFF655IXH.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6-vs-GM12878-ETV6-ENCFF655IXH
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOS.gz 2 GM12878-peak-calls/GM12878-FOS-ENCFF949TIZ.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOS-vs-GM12878-FOS-ENCFF949TIZ
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOXM1.gz 2 GM12878-peak-calls/GM12878-FOXM1-ENCFF114JXB.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOXM1-vs-GM12878-FOXM1-ENCFF114JXB
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA.gz 2 GM12878-peak-calls/GM12878-GABPA-ENCFF574ZEF.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF574ZEF
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA.gz 2 GM12878-peak-calls/GM12878-GABPA-ENCFF617GBZ.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF617GBZ
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA.gz 2 GM12878-peak-calls/GM12878-GABPA-ENCFF771RXX.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-GM12878-GABPA-ENCFF771RXX
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HSF1.gz 2 GM12878-peak-calls/GM12878-HSF1-ENCFF405WKK.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HSF1-vs-GM12878-HSF1-ENCFF405WKK
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1.gz 2 GM12878-peak-calls/GM12878-IKZF1-ENCFF448JWW.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF448JWW
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1.gz 2 GM12878-peak-calls/GM12878-IKZF1-ENCFF468AOG.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF468AOG
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1.gz 2 GM12878-peak-calls/GM12878-IKZF1-ENCFF786WSB.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-GM12878-IKZF1-ENCFF786WSB
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF2.gz 2 GM12878-peak-calls/GM12878-IKZF2-ENCFF578YIW.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF2-vs-GM12878-IKZF2-ENCFF578YIW
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF2.gz 2 GM12878-peak-calls/GM12878-IKZF2-ENCFF615CIJ.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF2-vs-GM12878-IKZF2-ENCFF615CIJ
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3.gz 2 GM12878-peak-calls/GM12878-IRF3-ENCFF679UBZ.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3-vs-GM12878-IRF3-ENCFF679UBZ
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3.gz 2 GM12878-peak-calls/GM12878-IRF3-ENCFF692CUY.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3-vs-GM12878-IRF3-ENCFF692CUY
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF4.gz 2 GM12878-peak-calls/GM12878-IRF4-ENCFF271OQQ.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF4-vs-GM12878-IRF4-ENCFF271OQQ
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF5.gz 2 GM12878-peak-calls/GM12878-IRF5-ENCFF095VAP.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF5-vs-GM12878-IRF5-ENCFF095VAP
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUNB.gz 2 GM12878-peak-calls/GM12878-JUNB-ENCFF185LJE.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUNB-vs-GM12878-JUNB-ENCFF185LJE
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND.gz 2 GM12878-peak-calls/GM12878-JUND-ENCFF738BAA.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND-vs-GM12878-JUND-ENCFF738BAA
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND.gz 2 GM12878-peak-calls/GM12878-JUND-ENCFF825BIG.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND-vs-GM12878-JUND-ENCFF825BIG
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.KLF5.gz 2 GM12878-peak-calls/GM12878-KLF5-ENCFF970MYF.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.KLF5-vs-GM12878-KLF5-ENCFF970MYF
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAFK.gz 2 GM12878-peak-calls/GM12878-MAFK-ENCFF043DXF.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAFK-vs-GM12878-MAFK-ENCFF043DXF
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAX.gz 2 GM12878-peak-calls/GM12878-MAX-ENCFF712UBB.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAX-vs-GM12878-MAX-ENCFF712UBB
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ.gz 2 GM12878-peak-calls/GM12878-MAZ-ENCFF211WVL.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-GM12878-MAZ-ENCFF211WVL
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ.gz 2 GM12878-peak-calls/GM12878-MAZ-ENCFF250FJC.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-GM12878-MAZ-ENCFF250FJC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2A.gz 2 GM12878-peak-calls/GM12878-MEF2A-ENCFF775DWU.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2A-vs-GM12878-MEF2A-ENCFF775DWU
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2B.gz 2 GM12878-peak-calls/GM12878-MEF2B-ENCFF780AUS.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2B-vs-GM12878-MEF2B-ENCFF780AUS
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2C.gz 2 GM12878-peak-calls/GM12878-MEF2C-ENCFF264GAB.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2C-vs-GM12878-MEF2C-ENCFF264GAB
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MXI1.gz 2 GM12878-peak-calls/GM12878-MXI1-ENCFF638YSV.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MXI1-vs-GM12878-MXI1-ENCFF638YSV
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYB.gz 2 GM12878-peak-calls/GM12878-MYB-ENCFF208DZU.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYB-vs-GM12878-MYB-ENCFF208DZU
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYC.gz 2 GM12878-peak-calls/GM12878-MYC-ENCFF765CKK.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYC-vs-GM12878-MYC-ENCFF765CKK
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC1.gz 2 GM12878-peak-calls/GM12878-NFATC1-ENCFF565HHF.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC1-vs-GM12878-NFATC1-ENCFF565HHF
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC3.gz 2 GM12878-peak-calls/GM12878-NFATC3-ENCFF623PTQ.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC3-vs-GM12878-NFATC3-ENCFF623PTQ
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFE2.gz 2 GM12878-peak-calls/GM12878-NFE2-ENCFF729STF.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFE2-vs-GM12878-NFE2-ENCFF729STF
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFE2.gz 2 GM12878-peak-calls/GM12878-NFE2-ENCFF766ERZ.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFE2-vs-GM12878-NFE2-ENCFF766ERZ
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYA.gz 2 GM12878-peak-calls/GM12878-NFYA-ENCFF339IEZ.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYA-vs-GM12878-NFYA-ENCFF339IEZ
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYB.gz 2 GM12878-peak-calls/GM12878-NFYB-ENCFF359ATR.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYB-vs-GM12878-NFYB-ENCFF359ATR
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C1.gz 2 GM12878-peak-calls/GM12878-NR2C1-ENCFF271VCD.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C1-vs-GM12878-NR2C1-ENCFF271VCD
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C2.gz 2 GM12878-peak-calls/GM12878-NR2C2-ENCFF735IUU.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C2-vs-GM12878-NR2C2-ENCFF735IUU
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2F1.gz 2 GM12878-peak-calls/GM12878-NR2F1-ENCFF118UKC.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2F1-vs-GM12878-NR2F1-ENCFF118UKC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NRF1.gz 2 GM12878-peak-calls/GM12878-NRF1-ENCFF864EBU.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NRF1-vs-GM12878-NRF1-ENCFF864EBU
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5.gz 2 GM12878-peak-calls/GM12878-PAX5-ENCFF220BTT.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-GM12878-PAX5-ENCFF220BTT
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5.gz 2 GM12878-peak-calls/GM12878-PAX5-ENCFF395KJU.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-GM12878-PAX5-ENCFF395KJU
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX8.gz 2 GM12878-peak-calls/GM12878-PAX8-ENCFF630IVV.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX8-vs-GM12878-PAX8-ENCFF630IVV
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PBX3.gz 2 GM12878-peak-calls/GM12878-PBX3-ENCFF236XCG.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PBX3-vs-GM12878-PBX3-ENCFF236XCG
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PKNOX1.gz 2 GM12878-peak-calls/GM12878-PKNOX1-ENCFF205YWV.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PKNOX1-vs-GM12878-PKNOX1-ENCFF205YWV
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.POU2F2.gz 2 GM12878-peak-calls/GM12878-POU2F2-ENCFF433TJX.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.POU2F2-vs-GM12878-POU2F2-ENCFF433TJX
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA.gz 2 GM12878-peak-calls/GM12878-RELA-ENCFF074NZK.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-GM12878-RELA-ENCFF074NZK
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA.gz 2 GM12878-peak-calls/GM12878-RELA-ENCFF218OPP.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-GM12878-RELA-ENCFF218OPP
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELB.gz 2 GM12878-peak-calls/GM12878-RELB-ENCFF505WBU.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELB-vs-GM12878-RELB-ENCFF505WBU
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST.gz 2 GM12878-peak-calls/GM12878-REST-ENCFF348LKE.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-GM12878-REST-ENCFF348LKE
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST.gz 2 GM12878-peak-calls/GM12878-REST-ENCFF428QEI.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-GM12878-REST-ENCFF428QEI
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RFX5.gz 2 GM12878-peak-calls/GM12878-RFX5-ENCFF914AYR.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RFX5-vs-GM12878-RFX5-ENCFF914AYR
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RUNX3.gz 2 GM12878-peak-calls/GM12878-RUNX3-ENCFF965LJE.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RUNX3-vs-GM12878-RUNX3-ENCFF965LJE
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RXRA.gz 2 GM12878-peak-calls/GM12878-RXRA-ENCFF575ZLF.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RXRA-vs-GM12878-RXRA-ENCFF575ZLF
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SIX5.gz 2 GM12878-peak-calls/GM12878-SIX5-ENCFF175SNC.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SIX5-vs-GM12878-SIX5-ENCFF175SNC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SMAD1.gz 2 GM12878-peak-calls/GM12878-SMAD1-ENCFF510SOO.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SMAD1-vs-GM12878-SMAD1-ENCFF510SOO
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SPI1.gz 2 GM12878-peak-calls/GM12878-SPI1-ENCFF881ARS.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SPI1-vs-GM12878-SPI1-ENCFF881ARS
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF1.gz 2 GM12878-peak-calls/GM12878-SREBF1-ENCFF729QOZ.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF1-vs-GM12878-SREBF1-ENCFF729QOZ
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF2.gz 2 GM12878-peak-calls/GM12878-SREBF2-ENCFF272RZS.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF2-vs-GM12878-SREBF2-ENCFF272RZS
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF.gz 2 GM12878-peak-calls/GM12878-SRF-ENCFF276KPQ.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF276KPQ
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF.gz 2 GM12878-peak-calls/GM12878-SRF-ENCFF489QRS.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF489QRS
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF.gz 2 GM12878-peak-calls/GM12878-SRF-ENCFF836NXG.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-GM12878-SRF-ENCFF836NXG
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1.gz 2 GM12878-peak-calls/GM12878-STAT1-ENCFF780PWT.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-GM12878-STAT1-ENCFF780PWT
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1.gz 2 GM12878-peak-calls/GM12878-STAT1-ENCFF973ACG.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-GM12878-STAT1-ENCFF973ACG
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT3.gz 2 GM12878-peak-calls/GM12878-STAT3-ENCFF719YDJ.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT3-vs-GM12878-STAT3-ENCFF719YDJ
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT5A.gz 2 GM12878-peak-calls/GM12878-STAT5A-ENCFF543CUS.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT5A-vs-GM12878-STAT5A-ENCFF543CUS
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBP.gz 2 GM12878-peak-calls/GM12878-TBP-ENCFF863HTV.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBP-vs-GM12878-TBP-ENCFF863HTV
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBX21.gz 2 GM12878-peak-calls/GM12878-TBX21-ENCFF655AWD.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBX21-vs-GM12878-TBX21-ENCFF655AWD
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12.gz 2 GM12878-peak-calls/GM12878-TCF12-ENCFF342RNH.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-GM12878-TCF12-ENCFF342RNH
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12.gz 2 GM12878-peak-calls/GM12878-TCF12-ENCFF429FHY.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-GM12878-TCF12-ENCFF429FHY
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF3.gz 2 GM12878-peak-calls/GM12878-TCF3-ENCFF235NCI.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF3-vs-GM12878-TCF3-ENCFF235NCI
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF7.gz 2 GM12878-peak-calls/GM12878-TCF7-ENCFF918LSK.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF7-vs-GM12878-TCF7-ENCFF918LSK
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF1.gz 2 GM12878-peak-calls/GM12878-USF1-ENCFF688QPS.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF1-vs-GM12878-USF1-ENCFF688QPS
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF2.gz 2 GM12878-peak-calls/GM12878-USF2-ENCFF666GZL.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF2-vs-GM12878-USF2-ENCFF666GZL
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YBX1.gz 2 GM12878-peak-calls/GM12878-YBX1-ENCFF249ZOW.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YBX1-vs-GM12878-YBX1-ENCFF249ZOW
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1.gz 2 GM12878-peak-calls/GM12878-YY1-ENCFF247QYO.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1-vs-GM12878-YY1-ENCFF247QYO
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1.gz 2 GM12878-peak-calls/GM12878-YY1-ENCFF320PLB.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1-vs-GM12878-YY1-ENCFF320PLB
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBED1.gz 2 GM12878-peak-calls/GM12878-ZBED1-ENCFF802ODC.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBED1-vs-GM12878-ZBED1-ENCFF802ODC
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33.gz 2 GM12878-peak-calls/GM12878-ZBTB33-ENCFF099ANS.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33-vs-GM12878-ZBTB33-ENCFF099ANS
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33.gz 2 GM12878-peak-calls/GM12878-ZBTB33-ENCFF550LPG.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33-vs-GM12878-ZBTB33-ENCFF550LPG
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB4.gz 2 GM12878-peak-calls/GM12878-ZBTB4-ENCFF273OXB.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB4-vs-GM12878-ZBTB4-ENCFF273OXB
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZEB1.gz 2 GM12878-peak-calls/GM12878-ZEB1-ENCFF363BVO.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZEB1-vs-GM12878-ZEB1-ENCFF363BVO
python ~/code/ChIP/regionIntersection_BigDataSets-overlapping_regions.py FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF384.gz 2 GM12878-peak-calls/GM12878-ZNF384-ENCFF990JXT.bed.gz 0 FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF384-vs-GM12878-ZNF384-ENCFF990JXT