Index of /kundaje/marinovg/oak/ENCODE4/Chromatin-nanopores/2025-01-28-Ultima-run

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]2016-11-16-refFlat.K562-10-20perc.TSS-profile-GM12878-pooled-bwameth.hg382025-04-16 15:53 97K 
[ ]2016-11-16-refFlat.K562-20-50perc.TSS-profile-GM12878-pooled-bwameth.hg382025-04-16 16:07 97K 
[ ]2016-11-16-refFlat.K562-bottom50perc.TSS-profile-GM12878-pooled-bwameth.hg382025-04-16 15:26 97K 
[ ]2016-11-16-refFlat.K562-top10perc.TSS-profile-GM12878-pooled-bwameth.hg382025-04-16 15:50 97K 
[ ]2016-11-16-refFlat.TSS-0bp.GM12878-10-20perc-RPKM.bed2025-03-13 22:56 190K 
[ ]2016-11-16-refFlat.TSS-0bp.GM12878-20-50perc-RPKM.bed2025-03-13 22:56 415K 
[ ]2016-11-16-refFlat.TSS-0bp.GM12878-bottom50perc-RPKM.bed2025-03-13 22:56 396K 
[ ]2016-11-16-refFlat.TSS-0bp.GM12878-top10perc-RPKM.bed2025-03-13 22:56 188K 
[ ]2016-11-16-refFlat.TSS-100bp.RPKM.L3354-GM12878-37C-rep12025-05-22 01:42 2.3M 
[ ]2016-11-16-refFlat.TSS-100bp.RPKM.SMF-ATAC.files2025-05-22 03:17 171  
[ ]2016-11-16-refFlat.TSS-100bp.RPKM.SMF-ATAC.table2025-05-22 03:58 1.7M 
[ ]2016-11-16-refFlat.TSS-100bp.averageMeth.L3449-to_L3456_merged.trimmed.bwameth.hg38.allC2025-05-22 03:50 1.5M 
[ ]2016-11-16-refFlat.TSS-profile-GM12878-pooled-bwameth.hg382025-03-14 06:35 99K 
[ ]2016-11-16-refFlat.TSS-profile-K562-pooled-bwameth.hg382025-03-14 00:25 83K 
[ ]2016-11-16-refFlat.TSS-profile-L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg382025-02-06 21:17 99K 
[ ]2016-11-16-refFlat.TSS-profile-L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg382025-02-06 21:17 99K 
[ ]2016-11-16-refFlat.TSS-profile-L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg382025-02-06 21:06 99K 
[ ]2016-11-16-refFlat.TSS-profile-L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg382025-02-06 21:06 99K 
[ ]2016-11-16-refFlat.TSS-profile-L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg382025-02-06 21:13 99K 
[ ]2016-11-16-refFlat.TSS-profile-L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg382025-02-06 21:14 99K 
[ ]2016-11-16-refFlat.TSS-profile-L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg382025-02-06 21:13 99K 
[ ]2016-11-16-refFlat.TSS-profile-L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg382025-02-06 21:15 99K 
[TXT]2025-04-14-K562-MinIONs-pooled.dorado.minimap.hg38.reads.tsv.bgz2025-05-31 08:22 190M 
[TXT]2025-04-14-K562-MinIONs-pooled.dorado.minimap.hg38.reads.tsv.bgz.tbi2025-05-31 08:22 860K 
[ ]AverageNMI.100radius.tar.gz2025-06-13 11:23 3.9M 
[DIR]AverageNMI.100radius/2025-06-13 11:22 -  
[DIR]AverageNMI.ChromBPnet/2025-06-10 09:22 -  
[ ]AverageNMI.motif-pairs-png.tar.gz2025-06-10 17:24 135M 
[DIR]AverageNMI.motif-pairs-png/2025-06-10 17:17 -  
[DIR]AverageNMI.motif-pairs/2025-06-10 17:20 -  
[TXT]AverageNMIfromBED-ChromBPnet-DeepSHAP-filtered.sh2025-06-09 17:54 77K 
[TXT]AverageNMIfromBED-ChromBPnet-heatmap-DeepSHAP-filtered.sh2025-06-09 17:56 65K 
[TXT]AverageNMIfromBED-ChromBPnet-heatmap.sh2025-05-28 15:46 31K 
[TXT]AverageNMIfromBED-ChromBPnet.sh2025-05-28 08:35 37K 
[TXT]AverageNMIfromBED-motif-pairs-heatmap.sh2025-06-10 11:41 2.6M 
[TXT]AverageNMIfromBED-motif-pairs.sh2025-06-10 11:39 3.5M 
[ ]CpG.mot2025-03-12 20:18 60  
[DIR]DNase-ENCFF759OLD.2kbp-vs-FIMO-profiles/2025-06-13 11:06 -  
[ ]DNase-ENCFF759OLD.2kbp-vs-FIMO-tfmodisco.seq_contrib.counts.meme.ENCSR000EMT-hg38-intersection2.BW-RPM2025-06-09 17:31 261M 
[ ]DNase-ENCFF759OLD.2kbp-vs-FIMO-tfmodisco.seq_contrib.counts.meme.ENCSR000EMT-hg38-intersection2.BW-RPM.min0.22025-06-09 17:40 32M 
[ ]DNase-ENCFF759OLD.2kbp-vs-FIMO-tfmodisco.seq_contrib.counts.meme.ENCSR000EMT-hg38-intersection2.BW-RPM.min0.52025-06-09 17:40 8.4M 
[ ]DNase-ENCFF759OLD.2kbp-vs-FIMO-tfmodisco.seq_contrib.counts.meme.ENCSR000EMT-hg38-intersection2.gz2025-06-09 17:07 59M 
[ ]DNase-ENCFF759OLD.2kbp-vs-FIMO-tfmodisco.seq_contrib.counts.meme.ENCSR000EMT-hg38-outersection2.gz2025-06-09 17:07 1.0G 
[ ]DNase-ENCFF759OLD.2kbp-vs-FIMO-tfmodisco.seq_contrib.profile.meme.ENCSR000EMT-hg38-intersection2.BW-RPM2025-06-09 17:35 385M 
[ ]DNase-ENCFF759OLD.2kbp-vs-FIMO-tfmodisco.seq_contrib.profile.meme.ENCSR000EMT-hg38-intersection2.BW-RPM.min0.22025-06-09 17:40 4.5M 
[ ]DNase-ENCFF759OLD.2kbp-vs-FIMO-tfmodisco.seq_contrib.profile.meme.ENCSR000EMT-hg38-intersection2.BW-RPM.min0.52025-06-09 17:40 1.2M 
[ ]DNase-ENCFF759OLD.2kbp-vs-FIMO-tfmodisco.seq_contrib.profile.meme.ENCSR000EMT-hg38-intersection2.gz2025-06-09 17:11 83M 
[ ]DNase-ENCFF759OLD.2kbp-vs-FIMO-tfmodisco.seq_contrib.profile.meme.ENCSR000EMT-hg38-outersection2.gz2025-06-09 17:11 1.2G 
[ ]DNase-ENCFF759OLD.2kbp.bed2025-05-27 23:30 2.3M 
[ ]DNase-ENCFF759OLD.250bp-vs-FIMO-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-intersection2.gz2025-05-30 02:08 80M 
[ ]DNase-ENCFF759OLD.250bp.bed2025-05-28 10:14 2.3M 
[ ]DNase-ENCFF759OLD.500bp.bed2025-05-28 10:12 2.3M 
[ ]DNase-ENCFF759OLD.bed2020-11-20 20:38 2.3M 
[DIR]FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-files/2025-06-07 05:56 -  
[DIR]FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-profiles-allC/2025-05-16 20:11 -  
[DIR]FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated-profiles/2025-04-20 08:37 -  
[TXT]FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF017XLW.50radius_split.Q1-Q5.500bp-radius2025-05-31 08:24 783K 
[IMG]FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF017XLW.50radius_split.Q1-Q5.500bp-radius.1bp.png.scatter.png2025-05-31 10:55 12M 
[IMG]FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF017XLW.50radius_split.Q1-Q5.500bp-radius.5bp.png.scatter.png2025-05-31 08:58 8.6M 
[IMG]FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF017XLW.50radius_split.Q1-Q5.500bp-radius.10bp.png.scatter.png2025-05-31 10:54 5.5M 
[IMG]FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF017XLW.50radius_split.Q1-Q5.500bp-radius.20bp.png.scatter.png2025-05-31 10:54 3.2M 
[TXT]FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF017XLW.50radius_split.Q1.1kbp-radius2025-05-31 07:44 157K 
[TXT]FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF017XLW.50radius_split.Q1.500bp-radius2025-05-31 07:44 157K 
[IMG]FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF017XLW.50radius_split.Q1.500bp-radius.5bp.png.scatter.png2025-05-31 08:20 1.2M 
[IMG]FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-GM12878-CTCF-ENCFF017XLW.50radius_split.Q1.500bp-radius.10bp.png.scatter.png2025-05-31 08:12 52K 
[TXT]FIMO-CIS-BP-vs-peak_calls.sh2025-06-07 05:00 44K 
[TXT]FIMO-tfmodisco.seq_contrib.counts.meme.ENCSR000EMT-hg38.fimo.tsv.bgz2025-06-07 06:12 1.3G 
[ ]FIMO-tfmodisco.seq_contrib.counts.meme.ENCSR000EMT-hg38.fimo.tsv.gz2025-06-07 06:01 1.0G 
[TXT]FIMO-tfmodisco.seq_contrib.profile.meme.ENCSR000EMT-hg38.fimo.tsv.bgz2025-06-07 06:19 1.7G 
[ ]FIMO-tfmodisco.seq_contrib.profile.meme.ENCSR000EMT-hg38.fimo.tsv.gz2025-06-07 06:02 1.3G 
[IMG]Fig2-2024-02-25-K562-IFN-amplicons.dorado.minimap.hg38.reads.amplicons-YlOrRd-noflip-subset500.w5.IFI6-promoter.scatter.png2025-06-06 12:41 23M 
[IMG]Fig2-2024-02-25-K562-IFN-amplicons.dorado.minimap.hg38.reads.amplicons-YlOrRd-noflip-subset500.w5.IFIT3-promoter.scatter.png2025-06-06 12:42 19M 
[IMG]Fig2-2024-02-25-K562-IFN-amplicons.dorado.minimap.hg38.reads.amplicons-YlOrRd-noflip-subset500.w5.USP18-promoter.scatter.png2025-06-06 12:42 22M 
[IMG]Fig2-2024-02-25-K562-NT-amplicons.dorado.minimap.hg38.reads.amplicons-YlOrRd-noflip-subset500.w5.IFI6-promoter.scatter.png2025-06-06 12:40 22M 
[IMG]Fig2-2024-02-25-K562-NT-amplicons.dorado.minimap.hg38.reads.amplicons-YlOrRd-noflip-subset500.w5.IFIT3-promoter.scatter.png2025-06-06 12:32 18M 
[IMG]Fig2-2024-02-25-K562-NT-amplicons.dorado.minimap.hg38.reads.amplicons-YlOrRd-noflip-subset500.w5.USP18-promoter.scatter.png2025-06-06 12:39 19M 
[ ]GM12878-10-20perc-RPKM2025-03-13 22:56 19K 
[ ]GM12878-20-50perc-RPKM2025-03-13 22:56 63K 
[ ]GM12878-CTCF-ENCFF356LIU-vs-FIMO-intersection2.gz2025-03-13 22:53 1.1M 
[ ]GM12878-DNase-counts_sequence_contribution_scores-ENCFF813FTC.bigWig2025-01-09 13:30 2.6G 
[ ]GM12878-DNase-profile_sequence_contribution_scores-ENCFF990NVC.bigWig2025-01-09 08:57 2.5G 
[ ]GM12878-DNase-sequence_motifs-ENCFF253LPP.tar.gz2025-01-09 12:44 258M 
[ ]GM12878-bottom50perc-RPKM2025-03-13 22:55 115K 
[TXT]GM12878-motifs-grep.sh2025-04-17 07:08 29K 
[DIR]GM12878-peak-calls/2025-04-17 07:21 -  
[TXT]GM12878-peaks-nearest-motif-distance-filter.sh2025-04-17 08:04 53K 
[TXT]GM12878-peaks-nearest-motif-quintile-split.sh2025-04-17 08:52 63K 
[TXT]GM12878-peaks-nearest-motif-remove.sh2025-04-17 08:01 9.9K 
[TXT]GM12878-peaks-nearest-motif-signalAroundPeaks-nano-quintiles-single.allC.sh2025-05-15 14:11 488K 
[TXT]GM12878-peaks-nearest-motif-signalAroundPeaks-nano-quintiles-single.sh2025-04-19 04:00 431K 
[TXT]GM12878-peaks-nearest-motif-signalAroundPeaks-nano-quintiles-tabix.sh2025-04-17 21:06 2.3M 
[TXT]GM12878-peaks-nearest-motif-signalAroundPeaks-nano-quintiles.sh2025-04-17 21:06 2.3M 
[TXT]GM12878-peaks-nearest-motif-signalAroundPeaks-nano-tabix-single.allC.sh2025-05-15 14:11 94K 
[TXT]GM12878-peaks-nearest-motif-signalAroundPeaks-nano-tabix-single.sh2025-04-19 04:04 82K 
[TXT]GM12878-peaks-nearest-motif-signalAroundPeaks-nano-tabix-stranded-single.allC.sh2025-05-16 15:15 388K 
[TXT]GM12878-peaks-nearest-motif-signalAroundPeaks-nano-tabix-stranded-single.sh2025-04-19 04:01 342K 
[TXT]GM12878-peaks-nearest-motif-signalAroundPeaks-nano-tabix-stranded.sh2025-04-18 07:42 1.9M 
[TXT]GM12878-peaks-nearest-motif-signalAroundPeaks-nano-tabix.sh2025-04-18 02:25 1.4M 
[TXT]GM12878-peaks-nearest-motif-signalAroundPeaks-nano.sh2025-04-17 21:06 1.4M 
[ ]GM12878-peaks-nearest-motif-signalAroundPeaks-quintiles.allC.files2025-05-16 14:41 128K 
[ ]GM12878-peaks-nearest-motif-signalAroundPeaks-quintiles.allC.table2025-05-16 14:42 20M 
[ ]GM12878-peaks-nearest-motif-signalAroundPeaks-quintiles.files2025-04-18 17:51 128K 
[ ]GM12878-peaks-nearest-motif-signalAroundPeaks-quintiles.table2025-04-20 02:59 19M 
[ ]GM12878-peaks-nearest-motif-signalAroundPeaks-quintiles.table_a2025-04-18 17:55 19M 
[ ]GM12878-peaks-nearest-motif-signalAroundPeaks.allC.files2025-05-16 15:05 128K 
[ ]GM12878-peaks-nearest-motif-signalAroundPeaks.allC.table2025-05-16 18:23 20M 
[ ]GM12878-peaks-nearest-motif-signalAroundPeaks.files_a2025-04-20 08:34 74K 
[ ]GM12878-peaks-nearest-motif-signalAroundPeaks.table2025-04-20 08:35 12M 
[TXT]GM12878-peaks-nearest-motif-strand-split.sh2025-04-18 07:39 51K 
[TXT]GM12878-peaks-nearest-motif.sh2025-04-17 08:49 83K 
[TXT]GM12878-peaks-wget.sh2025-04-17 07:18 19K 
[ ]GM12878-top10perc-RPKM2025-03-13 22:56 18K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-GM12878-pooled.bwameth.hg382025-03-14 05:59 99K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-K562-pooled.bwameth.hg382025-03-14 00:46 89K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-King_eccDNA_NOME.deduped.pooled.sorted_CHH.GpC-only_noCpGpC2025-05-22 02:52 97K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3449-L3413-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg382025-02-06 21:25 99K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3450-L3414-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg382025-02-06 21:22 99K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3451-L3416-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg382025-02-06 21:16 99K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3452-L3417-GM18278_200K_15uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg382025-02-06 21:12 99K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3453-L3419-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg382025-02-06 21:12 99K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3454-L3420-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg382025-02-06 21:22 99K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3455-L3422-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg382025-02-06 21:21 99K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3456-L3423-GM18278_200K_10uL_CseDa01_PUREexpress.415630.trimmed.bwameth.hg382025-02-06 21:07 99K 
[ ]L3449-to-L3456.trimmed.bwameth.EBV.merged.allC.bedGraph.bgz2025-05-13 02:43 680K 
[ ]L3449-to-L3456.trimmed.bwameth.EBV.merged.allC.bedGraph.bgz.tbi2025-05-13 02:43 245  
[ ]L3449-to-L3456.trimmed.bwameth.EBV.merged.bam2025-05-13 02:39 50M 
[ ]L3449-to-L3456.trimmed.bwameth.EBV.merged.bam.bai2025-05-13 02:41 960  
[ ]L3449-to_L3456_merged.trimmed.bwameth.hg38.allC.bedGraph.10bp.minCov10.bigWig2025-05-22 04:42 1.9G 
[ ]L3449-to_L3456_merged.trimmed.bwameth.hg38.allC.bedGraph.bgz2025-05-15 16:25 9.9G 
[ ]L3449-to_L3456_merged.trimmed.bwameth.hg38.allC.bedGraph.bgz.tbi2025-05-15 18:02 2.5M 
[ ]L3449-to_L3456_merged.trimmed.bwameth.hg38.allC.bedGraph.minus.bgz2025-05-15 09:11 5.0G 
[ ]L3449-to_L3456_merged.trimmed.bwameth.hg38.allC.bedGraph.minus.bgz.tbi2025-05-15 17:59 1.5M 
[ ]L3449-to_L3456_merged.trimmed.bwameth.hg38.allC.bedGraph.minus.chrM2025-05-22 03:16 53K 
[ ]L3449-to_L3456_merged.trimmed.bwameth.hg38.allC.bedGraph.plus.bgz2025-05-15 09:02 5.0G 
[ ]L3449-to_L3456_merged.trimmed.bwameth.hg38.allC.bedGraph.plus.bgz.tbi2025-05-15 17:59 1.5M 
[ ]L3449-to_L3456_merged.trimmed.bwameth.hg38.allC.bedGraph.plus.chrM2025-05-22 03:16 115K 
[ ]L3449-to_L3456_merged.trimmed.bwameth.hg38_CHH.bedGraph.bgz2025-04-19 14:20 7.4G 
[ ]L3449-to_L3456_merged.trimmed.bwameth.hg38_CHH.bedGraph.bgz.tbi2025-04-19 15:10 1.4M 
[ ]L3449-to_L3456_merged.trimmed.bwameth.hg38_CHH.bedGraph.minus.bgz2025-04-19 09:16 3.7G 
[ ]L3449-to_L3456_merged.trimmed.bwameth.hg38_CHH.bedGraph.minus.bgz.tbi2025-04-19 15:08 1.6M 
[ ]L3449-to_L3456_merged.trimmed.bwameth.hg38_CHH.bedGraph.plus.bgz2025-04-19 09:09 3.7G 
[ ]L3449-to_L3456_merged.trimmed.bwameth.hg38_CHH.bedGraph.plus.bgz.tbi2025-04-19 15:08 1.6M 
[TXT]README.md2024-09-07 10:56 2.0K 
[ ]SAMstats_CseDa01.files2025-03-09 19:24 2.6K 
[ ]SAMstats_CseDa01.table2025-03-09 19:24 1.9K 
[ ]SAMstats_CseDa01_files.tar.gz2025-03-09 19:24 1.2K 
[TXT]SingleMoleculeCorrelation-NMI-matrix-C-BAM.hg38.10200.py2025-05-25 14:24 2.6K 
[TXT]SingleMoleculeCorrelation-NMI-matrix-C-BAM.hg38.10200.sh2025-05-25 14:24 557M 
[TXT]SingleMoleculeCorrelation-NMI-matrix-C-BAM.hg38.150200.sh2025-05-24 22:50 37M 
[TXT]SingleMoleculeCorrelation-NMI-matrix-C-BAM.hg38.4000200.sh2025-05-24 22:16 1.4M 
[TXT]SingleMoleculeCorrelation-NMI-matrix-DNase-ENCFF759OLD.sh2025-05-25 13:14 15M 
[DIR]SingleMoleculeCorrelation-NMI-matrix-files/2025-06-15 04:05 -  
[DIR]UG-files/2025-03-13 22:31 -  
[ ]bias_estimation.4mers.files2025-05-24 13:39 540  
[ ]bias_estimation.4mers.table2025-05-24 15:52 60K 
[ ]bias_estimation.6mers.files2025-05-24 13:39 540  
[ ]bias_estimation.6mers.table2025-05-24 15:52 899K 
[ ]bias_estimation_files.tar.gz2025-05-24 15:52 1.0M 
[ ]chrM-C-NMI.min100.bed2025-05-24 20:58 0  
[ ]chrM-tiling.200bp.bed2025-05-22 03:57 5.1K 
[ ]chrM-tiling.225bp.bed2025-05-22 03:57 5.1K 
[DIR]chrM-tiling.250bp-dSMF-footprints-PNG/2025-05-23 10:38 -  
[TXT]chrM-tiling.250bp-dSMF-footprints.sh2025-05-22 04:11 624K 
[ ]chrM-tiling.250bp.bed2025-05-22 03:57 5.1K 
[ ]chrM.CpG.bed2025-03-12 20:21 15K 
[ ]chrM.bed2025-05-24 20:41 12  
[DIR]counts/2025-06-15 04:06 -  
[ ]footprint-scores-minMax.Q1-Q5.files2025-05-28 05:20 125K 
[ ]footprint-scores-minMax.Q1-Q5.table2025-05-28 05:20 141K 
[TXT]gzip-chunks.sh2025-03-06 20:27 51K 
[ ]hg38.4000200.bed2025-05-24 22:14 18K 
[ ]hg38.CpG-L2922-408_CseDa01-5min.profile2025-05-15 11:43 5.0K 
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[ ]hg38.DNase-ENCFF759OLD.2kbp.NMI.bgz2025-05-26 09:29 3.4G 
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[ ]hg38.NMI.bgz2025-06-03 12:19 90G 
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[TXT]motifPairs-nearest-peak-only(wrong).sh2025-06-07 05:57 25K 
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[ ]signal-around-DNase-ENCFF759OLD_patterns-DeeSHAP-filtered.files2025-06-09 17:47 33K 
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[TXT]signal-around-DNase-ENCFF759OLD_patterns.sh2025-05-28 03:56 60K 
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