python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3468-lung_firboblasts_HCMV.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3468-lung_firboblasts_HCMV.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3468-lung_firboblasts_HCMV.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L3468-lung_firboblasts_HCMV.merlin.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3470-hEC-2.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3470-hEC-2.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3471-hEC-3.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3471-hEC-3.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3472-hInv-1.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3472-hInv-1.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3474-hInv-1.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3474-hInv-1.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3476-hECPos-2.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3476-hECPos-2.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3477-hECPos-3.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3477-hECPos-3.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3479-hInvPos-2.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3479-hInvPos-2.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3480-hInvPos-3.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3480-hInvPos-3.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3481-CRE-rep1.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3481-CRE-rep1.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3482-CRE-rep2.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3482-CRE-rep2.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3483-noCRE-rep1.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3483-noCRE-rep1.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3484-noCRE-rep2.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3484-noCRE-rep2.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3485-EC-rep1.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3485-EC-rep1.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3486-EC-rep2.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3486-EC-rep2.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3489-hInv-rep1.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3489-hInv-rep1.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3493-Hanbang_WT_NRSF.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3493-Hanbang_WT_NRSF.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3494-Hanbang_HS_NRSF.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3494-Hanbang_HS_NRSF.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3495-Hanbang_AS_NRSF.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3495-Hanbang_AS_NRSF.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3496-lung_firboblasts_H3K27me3.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3496-lung_firboblasts_H3K27me3.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3496-lung_firboblasts_H3K27me3.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L3496-lung_firboblasts_H3K27me3.merlin.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3497-lung_firboblasts_CTCF.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3497-lung_firboblasts_CTCF.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3497-lung_firboblasts_CTCF.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L3497-lung_firboblasts_CTCF.merlin.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3498-lung_firboblasts_H3K4me3.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3498-lung_firboblasts_H3K4me3.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3498-lung_firboblasts_H3K4me3.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L3498-lung_firboblasts_H3K4me3.merlin.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3499-lung_firboblasts_4H8.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3499-lung_firboblasts_4H8.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3499-lung_firboblasts_4H8.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L3499-lung_firboblasts_4H8.merlin.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3500-lung_firboblasts_H3K27ac.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3500-lung_firboblasts_H3K27ac.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3500-lung_firboblasts_H3K27ac.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L3500-lung_firboblasts_H3K27ac.merlin.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3501-lung_firboblasts_H3K9me3.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3501-lung_firboblasts_H3K9me3.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3501-lung_firboblasts_H3K9me3.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L3501-lung_firboblasts_H3K9me3.merlin.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3502-lung_firboblasts_H3K4me1.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3502-lung_firboblasts_H3K4me1.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3502-lung_firboblasts_H3K4me1.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L3502-lung_firboblasts_H3K4me1.merlin.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3503-Hanbang_WT_input.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3503-Hanbang_WT_input.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3504-Hanbang_HS_input.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3504-Hanbang_HS_input.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3505-Hanbang_AS_input.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3505-Hanbang_AS_input.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3506-lung_firboblasts_HCMV-Input.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3506-lung_firboblasts_HCMV-Input.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3506-lung_firboblasts_HCMV-Input.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L3506-lung_firboblasts_HCMV-Input.merlin.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3507-CRE-rep1.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3507-CRE-rep1.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3508-CRE-rep2.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3508-CRE-rep2.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3509-CRE-rep3.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3509-CRE-rep3.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3510-noCRE-rep1.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3510-noCRE-rep1.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3511-noCRE-rep2.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3511-noCRE-rep2.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3512-noCRE-rep3.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3512-noCRE-rep3.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3513-EC-rep1.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3513-EC-rep1.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3514-EC-rep2.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3514-EC-rep2.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L3515-EC-rep3.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3515-EC-rep3.hg38-male.2x36mers.unique.dedup.wig -notitle -RPM -uniqueBAM