tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_0/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_0-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_0-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_100/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_100-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_100-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_101/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_101-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_101-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_102/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_102-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_102-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_103/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_103-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_103-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_104/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_104-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_104-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_105/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_105-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_105-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_106/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_106-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_106-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_107/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_107-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_107-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_108/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_108-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_108-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_109/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_109-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_109-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_10/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_10-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_10-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_110/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_110-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_110-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_111/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_111-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_111-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_112/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_112-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_112-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_113/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_113-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_113-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_114/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_114-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_114-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_115/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_115-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_115-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_116/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_116-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_116-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_117/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_117-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_117-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_118/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_118-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_118-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_119/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_119-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_119-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_11/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_11-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_11-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_120/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_120-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_120-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_121/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_121-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_121-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_122/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_122-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_122-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_123/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_123-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_123-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_124/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_124-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_124-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_125/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_125-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_125-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_126/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_126-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_126-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_127/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_127-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_127-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_128/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_128-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_128-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_129/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_129-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_129-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_12/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_12-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_12-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_130/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_130-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_130-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_131/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_131-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_131-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_132/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_132-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_132-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_133/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_133-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_133-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_134/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_134-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_134-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_135/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_135-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_135-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_136/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_136-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_136-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_137/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_137-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_137-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_138/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_138-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_138-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_139/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_139-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_139-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_13/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_13-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_13-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_140/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_140-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_140-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_141/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_141-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_141-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_142/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_142-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_142-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_143/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_143-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_143-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_144/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_144-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_144-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_145/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_145-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_145-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_146/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_146-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_146-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_147/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_147-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_147-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_148/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_148-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_148-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_149/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_149-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_149-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_14/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_14-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_14-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_150/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_150-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_150-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_151/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_151-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_151-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_152/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_152-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_152-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_153/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_153-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_153-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_154/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_154-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_154-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_155/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_155-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_155-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_156/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_156-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_156-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_157/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_157-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_157-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_158/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_158-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_158-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_159/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_159-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_159-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_15/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_15-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_15-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_160/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_160-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_160-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_161/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_161-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_161-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_162/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_162-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_162-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_163/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_163-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_163-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_164/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_164-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_164-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_165/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_165-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_165-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_166/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_166-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_166-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_167/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_167-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_167-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_168/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_168-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_168-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_169/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_169-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_169-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_16/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_16-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_16-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_170/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_170-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_170-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_171/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_171-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_171-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_172/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_172-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_172-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_173/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_173-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_173-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_174/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_174-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_174-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_175/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_175-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_175-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_176/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_176-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_176-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_177/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_177-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_177-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_178/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_178-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_178-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_179/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_179-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_179-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_17/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_17-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_17-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_180/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_180-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_180-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_181/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_181-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_181-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_182/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_182-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_182-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_183/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_183-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_183-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_184/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_184-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_184-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_185/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_185-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_185-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_186/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_186-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_186-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_187/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_187-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_187-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_188/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_188-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_188-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_189/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_189-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_189-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_18/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_18-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_18-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_190/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_190-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_190-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_191/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_191-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_191-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_192/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_192-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_192-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_193/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_193-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_193-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_194/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_194-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_194-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_195/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_195-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_195-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_196/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_196-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_196-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_197/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_197-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_197-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_198/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_198-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_198-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_199/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_199-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_199-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_19/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_19-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_19-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_1/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_1-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_1-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_200/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_200-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_200-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_201/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_201-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_201-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_202/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_202-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_202-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_203/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_203-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_203-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_204/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_204-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_204-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_205/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_205-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_205-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_206/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_206-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_206-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_207/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_207-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_207-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_208/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_208-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_208-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_209/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_209-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_209-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_20/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_20-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_20-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_210/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_210-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_210-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_211/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_211-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_211-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_212/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_212-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_212-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_213/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_213-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_213-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_214/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_214-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_214-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_215/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_215-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_215-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_216/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_216-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_216-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_217/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_217-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_217-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_218/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_218-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_218-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_219/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_219-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_219-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_21/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_21-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_21-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_220/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_220-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_220-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_221/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_221-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_221-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_222/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_222-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_222-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_223/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_223-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_223-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_224/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_224-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_224-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_225/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_225-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_225-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_226/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_226-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_226-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_227/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_227-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_227-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_228/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_228-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_228-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_229/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_229-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_229-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_22/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_22-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_22-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_230/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_230-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_230-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_231/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_231-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_231-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_232/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_232-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_232-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_233/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_233-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_233-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_234/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_234-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_234-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_235/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_235-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_235-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_236/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_236-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_236-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_237/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_237-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_237-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_238/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_238-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_238-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_239/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_239-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_239-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_23/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_23-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_23-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_240/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_240-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_240-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_241/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_241-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_241-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_242/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_242-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_242-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_243/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_243-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_243-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_244/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_244-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_244-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_245/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_245-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_245-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_246/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_246-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_246-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_247/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_247-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_247-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_248/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_248-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_248-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_249/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_249-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_249-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_24/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_24-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_24-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_250/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_250-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_250-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_251/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_251-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_251-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_252/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_252-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_252-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_253/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_253-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_253-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_254/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_254-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_254-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_255/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_255-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_255-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_256/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_256-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_256-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_257/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_257-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_257-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_258/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_258-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_258-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_259/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_259-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_259-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_25/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_25-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_25-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_260/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_260-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_260-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_261/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_261-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_261-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_262/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_262-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_262-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_263/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_263-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_263-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_264/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_264-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_264-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_265/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_265-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_265-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_266/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_266-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_266-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_267/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_267-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_267-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_268/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_268-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_268-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_269/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_269-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_269-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_26/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_26-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_26-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_270/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_270-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_270-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_271/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_271-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_271-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_272/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_272-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_272-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_273/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_273-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_273-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_274/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_274-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_274-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_275/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_275-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_275-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_276/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_276-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_276-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_277/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_277-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_277-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_278/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_278-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_278-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_279/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_279-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_279-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_27/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_27-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_27-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_280/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_280-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_280-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_281/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_281-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_281-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_282/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_282-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_282-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_283/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_283-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_283-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_284/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_284-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_284-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_285/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_285-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_285-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_286/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_286-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_286-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_287/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_287-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_287-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_288/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_288-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_288-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_289/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_289-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_289-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_28/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_28-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_28-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_290/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_290-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_290-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_291/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_291-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_291-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_292/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_292-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_292-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_293/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_293-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_293-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_294/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_294-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_294-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_295/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_295-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_295-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_296/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_296-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_296-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_297/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_297-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_297-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_298/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_298-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_298-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_299/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_299-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_299-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_29/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_29-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_29-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_2/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_2-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_2-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_300/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_300-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_300-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_301/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_301-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_301-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_302/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_302-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_302-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_303/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_303-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_303-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_304/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_304-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_304-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_305/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_305-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_305-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_306/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_306-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_306-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_307/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_307-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_307-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_308/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_308-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_308-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_309/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_309-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_309-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_30/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_30-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_30-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_310/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_310-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_310-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_311/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_311-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_311-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_312/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_312-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_312-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_313/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_313-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_313-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_314/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_314-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_314-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_315/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_315-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_315-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_316/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_316-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_316-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_317/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_317-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_317-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_318/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_318-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_318-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_319/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_319-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_319-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_31/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_31-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_31-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_320/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_320-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_320-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_321/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_321-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_321-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_322/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_322-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_322-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_323/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_323-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_323-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_324/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_324-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_324-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_325/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_325-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_325-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_326/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_326-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_326-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_327/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_327-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_327-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_328/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_328-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_328-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_329/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_329-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_329-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_32/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_32-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_32-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_330/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_330-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_330-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_331/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_331-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_331-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_332/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_332-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_332-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_333/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_333-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_333-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_334/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_334-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_334-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_335/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_335-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_335-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_336/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_336-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_336-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_337/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_337-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_337-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_338/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_338-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_338-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_339/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_339-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_339-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_33/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_33-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_33-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_340/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_340-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_340-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_341/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_341-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_341-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_342/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_342-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_342-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_343/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_343-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_343-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_344/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_344-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_344-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_345/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_345-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_345-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_346/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_346-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_346-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_347/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_347-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_347-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_348/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_348-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_348-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_349/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_349-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_349-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_34/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_34-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_34-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_350/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_350-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_350-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_351/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_351-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_351-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_352/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_352-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_352-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_353/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_353-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_353-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_354/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_354-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_354-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_355/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_355-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_355-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_356/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_356-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_356-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_357/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_357-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_357-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_358/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_358-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_358-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_359/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_359-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_359-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_35/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_35-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_35-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_360/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_360-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_360-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_361/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_361-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_361-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_362/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_362-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_362-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_363/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_363-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_363-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_364/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_364-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_364-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_365/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_365-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_365-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_366/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_366-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_366-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_367/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_367-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_367-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_368/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_368-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_368-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_369/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_369-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_369-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_36/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_36-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_36-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_370/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_370-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_370-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_371/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_371-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_371-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_372/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_372-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_372-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_373/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_373-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_373-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_374/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_374-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_374-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_375/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_375-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_375-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_376/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_376-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_376-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_377/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_377-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_377-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_378/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_378-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_378-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_379/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_379-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_379-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_37/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_37-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_37-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_380/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_380-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_380-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_381/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_381-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_381-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_382/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_382-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_382-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_383/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_383-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_383-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_384/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_384-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_384-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_385/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_385-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_385-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_386/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_386-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_386-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_387/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_387-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_387-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_388/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_388-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_388-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_389/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_389-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_389-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_38/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_38-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_38-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_390/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_390-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_390-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_391/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_391-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_391-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_392/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_392-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_392-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_393/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_393-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_393-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_394/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_394-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_394-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_395/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_395-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_395-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_396/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_396-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_396-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_397/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_397-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_397-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_398/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_398-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_398-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_399/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_399-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_399-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_39/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_39-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_39-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_3/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_3-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_3-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_400/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_400-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_400-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_401/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_401-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_401-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_402/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_402-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_402-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_403/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_403-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_403-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_404/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_404-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_404-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_405/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_405-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_405-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_406/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_406-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_406-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_407/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_407-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_407-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_408/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_408-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_408-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_409/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_409-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_409-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_40/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_40-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_40-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_410/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_410-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_410-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_411/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_411-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_411-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_412/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_412-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_412-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_413/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_413-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_413-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_414/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_414-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_414-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_415/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_415-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_415-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_416/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_416-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_416-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_417/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_417-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_417-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_418/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_418-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_418-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_419/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_419-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_419-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_41/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_41-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_41-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_420/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_420-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_420-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_421/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_421-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_421-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_422/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_422-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_422-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_423/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_423-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_423-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_424/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_424-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_424-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_425/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_425-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_425-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_426/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_426-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_426-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_427/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_427-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_427-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_428/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_428-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_428-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_429/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_429-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_429-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_42/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_42-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_42-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_430/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_430-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_430-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_431/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_431-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_431-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_432/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_432-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_432-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_433/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_433-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_433-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_434/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_434-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_434-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_435/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_435-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_435-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_436/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_436-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_436-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_437/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_437-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_437-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_438/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_438-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_438-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_439/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_439-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_439-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_43/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_43-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_43-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_440/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_440-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_440-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_441/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_441-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_441-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_442/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_442-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_442-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_443/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_443-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_443-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_444/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_444-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_444-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_445/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_445-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_445-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_446/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_446-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_446-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_447/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_447-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_447-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_448/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_448-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_448-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_449/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_449-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_449-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_44/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_44-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_44-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_450/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_450-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_450-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_451/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_451-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_451-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_452/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_452-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_452-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_453/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_453-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_453-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_454/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_454-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_454-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_455/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_455-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_455-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_456/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_456-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_456-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_457/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_457-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_457-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_458/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_458-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_458-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_459/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_459-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_459-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_45/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_45-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_45-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_460/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_460-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_460-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_461/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_461-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_461-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_462/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_462-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_462-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_463/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_463-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_463-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_464/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_464-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_464-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_465/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_465-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_465-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_466/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_466-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_466-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_467/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_467-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_467-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_468/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_468-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_468-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_469/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_469-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_469-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_46/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_46-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_46-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_470/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_470-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_470-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_471/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_471-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_471-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_472/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_472-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_472-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_473/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_473-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_473-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_474/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_474-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_474-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_475/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_475-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_475-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_476/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_476-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_476-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_477/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_477-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_477-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_478/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_478-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_478-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_479/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_479-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_479-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_47/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_47-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_47-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_480/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_480-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_480-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_481/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_481-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_481-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_482/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_482-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_482-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_483/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_483-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_483-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_484/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_484-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_484-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_485/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_485-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_485-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_486/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_486-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_486-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_487/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_487-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_487-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_488/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_488-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_488-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_489/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_489-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_489-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_48/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_48-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_48-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_490/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_490-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_490-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_491/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_491-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_491-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_492/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_492-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_492-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_493/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_493-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_493-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_494/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_494-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_494-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_495/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_495-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_495-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_496/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_496-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_496-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_497/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_497-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_497-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_498/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_498-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_498-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_499/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_499-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_499-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_49/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_49-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_49-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_4/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_4-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_4-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_500/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_500-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_500-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_501/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_501-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_501-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_502/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_502-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_502-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_503/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_503-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_503-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_504/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_504-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_504-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_505/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_505-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_505-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_506/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_506-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_506-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_507/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_507-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_507-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_508/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_508-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_508-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_509/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_509-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_509-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_50/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_50-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_50-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_510/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_510-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_510-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_511/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_511-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_511-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_512/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_512-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_512-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_513/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_513-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_513-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_514/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_514-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_514-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_515/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_515-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_515-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_516/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_516-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_516-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_517/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_517-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_517-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_518/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_518-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_518-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_519/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_519-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_519-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_51/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_51-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_51-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_520/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_520-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_520-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_521/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_521-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_521-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_522/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_522-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_522-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_523/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_523-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_523-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_524/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_524-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_524-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_525/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_525-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_525-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_526/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_526-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_526-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_527/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_527-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_527-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_528/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_528-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_528-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_529/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_529-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_529-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_52/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_52-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_52-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_530/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_530-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_530-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_531/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_531-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_531-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_532/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_532-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_532-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_533/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_533-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_533-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_534/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_534-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_534-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_535/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_535-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_535-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_536/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_536-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_536-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_537/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_537-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_537-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_538/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_538-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_538-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_539/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_539-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_539-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_53/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_53-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_53-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_540/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_540-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_540-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_541/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_541-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_541-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_542/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_542-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_542-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_543/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_543-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_543-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_544/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_544-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_544-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_545/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_545-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_545-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_546/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_546-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_546-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_547/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_547-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_547-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_548/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_548-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_548-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_549/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_549-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_549-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_54/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_54-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_54-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_550/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_550-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_550-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_551/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_551-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_551-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_552/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_552-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_552-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_553/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_553-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_553-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_554/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_554-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_554-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_555/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_555-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_555-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_556/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_556-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_556-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_557/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_557-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_557-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_558/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_558-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_558-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_559/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_559-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_559-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_55/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_55-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_55-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_560/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_560-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_560-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_561/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_561-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_561-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_562/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_562-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_562-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_563/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_563-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_563-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_564/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_564-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_564-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_565/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_565-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_565-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_566/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_566-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_566-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_567/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_567-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_567-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_568/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_568-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_568-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_569/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_569-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_569-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_56/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_56-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_56-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_570/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_570-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_570-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_571/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_571-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_571-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_572/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_572-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_572-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_573/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_573-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_573-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_574/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_574-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_574-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_575/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_575-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_575-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_576/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_576-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_576-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_577/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_577-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_577-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_578/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_578-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_578-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_579/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_579-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_579-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_57/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_57-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_57-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_580/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_580-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_580-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_581/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_581-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_581-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_582/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_582-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_582-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_583/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_583-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_583-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_584/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_584-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_584-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_585/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_585-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_585-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_586/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_586-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_586-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_587/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_587-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_587-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_588/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_588-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_588-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_589/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_589-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_589-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_58/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_58-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_58-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_590/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_590-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_590-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_591/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_591-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_591-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_592/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_592-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_592-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_593/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_593-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_593-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_594/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_594-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_594-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_595/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_595-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_595-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_596/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_596-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_596-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_597/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_597-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_597-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_598/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_598-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_598-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_599/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_599-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_599-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_59/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_59-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_59-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_5/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_5-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_5-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_600/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_600-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_600-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_601/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_601-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_601-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_602/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_602-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_602-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_603/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_603-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_603-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_604/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_604-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_604-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_605/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_605-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_605-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_606/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_606-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_606-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_607/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_607-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_607-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_608/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_608-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_608-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_609/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_609-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_609-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_60/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_60-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_60-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_610/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_610-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_610-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_611/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_611-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_611-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_612/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_612-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_612-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_613/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_613-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_613-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_614/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_614-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_614-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_615/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_615-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_615-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_616/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_616-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_616-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_617/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_617-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_617-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_618/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_618-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_618-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_619/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_619-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_619-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_61/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_61-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_61-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_620/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_620-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_620-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_621/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_621-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_621-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_622/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_622-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_622-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_623/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_623-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_623-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_624/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_624-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_624-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_625/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_625-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_625-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_626/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_626-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_626-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_627/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_627-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_627-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_628/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_628-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_628-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_629/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_629-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_629-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_62/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_62-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_62-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_630/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_630-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_630-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_631/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_631-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_631-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_632/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_632-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_632-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_633/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_633-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_633-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_634/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_634-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_634-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_635/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_635-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_635-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_636/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_636-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_636-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_637/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_637-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_637-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_638/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_638-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_638-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_639/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_639-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_639-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_63/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_63-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_63-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_640/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_640-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_640-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_641/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_641-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_641-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_642/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_642-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_642-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_643/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_643-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_643-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_644/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_644-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_644-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_645/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_645-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_645-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_646/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_646-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_646-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_647/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_647-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_647-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_648/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_648-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_648-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_649/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_649-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_649-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_64/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_64-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_64-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_650/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_650-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_650-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_651/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_651-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_651-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_652/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_652-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_652-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_653/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_653-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_653-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_654/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_654-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_654-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_655/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_655-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_655-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_656/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_656-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_656-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_657/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_657-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_657-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_658/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_658-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_658-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_659/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_659-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_659-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_65/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_65-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_65-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_660/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_660-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_660-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_661/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_661-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_661-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_662/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_662-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_662-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_663/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_663-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_663-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_664/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_664-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_664-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_665/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_665-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_665-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_666/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_666-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_666-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_667/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_667-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_667-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_668/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_668-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_668-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_669/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_669-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_669-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_66/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_66-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_66-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_670/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_670-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_670-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_671/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_671-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_671-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_672/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_672-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_672-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_673/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_673-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_673-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_674/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_674-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_674-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_675/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_675-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_675-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_676/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_676-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_676-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_677/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_677-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_677-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_678/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_678-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_678-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_679/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_679-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_679-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_67/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_67-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_67-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_680/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_680-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_680-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_681/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_681-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_681-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_682/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_682-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_682-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_683/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_683-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_683-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_684/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_684-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_684-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_685/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_685-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_685-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_686/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_686-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_686-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_687/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_687-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_687-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_688/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_688-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_688-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_689/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_689-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_689-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_68/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_68-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_68-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_690/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_690-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_690-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_691/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_691-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_691-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_692/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_692-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_692-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_693/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_693-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_693-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_694/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_694-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_694-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_695/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_695-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_695-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_696/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_696-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_696-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_697/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_697-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_697-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_698/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_698-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_698-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_699/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_699-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_699-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_69/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_69-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_69-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_6/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_6-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_6-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_700/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_700-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_700-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_701/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_701-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_701-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_702/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_702-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_702-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_703/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_703-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_703-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_704/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_704-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_704-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_705/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_705-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_705-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_706/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_706-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_706-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_70/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_70-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_70-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_71/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_71-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_71-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_72/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_72-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_72-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_73/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_73-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_73-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_74/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_74-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_74-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_75/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_75-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_75-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_76/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_76-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_76-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_77/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_77-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_77-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_78/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_78-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_78-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_79/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_79-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_79-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_7/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_7-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_7-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_80/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_80-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_80-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_81/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_81-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_81-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_82/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_82-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_82-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_83/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_83-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_83-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_84/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_84-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_84-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_85/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_85-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_85-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_86/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_86-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_86-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_87/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_87-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_87-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_88/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_88-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_88-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_89/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_89-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_89-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_8/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_8-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_8-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_90/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_90-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_90-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_91/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_91-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_91-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_92/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_92-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_92-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_93/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_93-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_93-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_94/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_94-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_94-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_95/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_95-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_95-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_96/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_96-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_96-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_97/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_97-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_97-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_98/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_98-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_98-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_99/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_99-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_99-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAN06711_bf4f35f0_9/0 --fastq-filenames single_fast5-output-FAN06711_bf4f35f0_9-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAN06711_bf4f35f0_9-guppy/sequencing_summary.txt