tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_0/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_0-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_0
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_10/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_10-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_10
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_11/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_11-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_11
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_12/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_12-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_12
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_13/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_13-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_13
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_14/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_14-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_14
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_15/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_15-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_15
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_16/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_16-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_16
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_17/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_17-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_17
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_18/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_18-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_18
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_19/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_19-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_19
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_1/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_1-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_1
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_20/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_20-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_20
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_21/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_21-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_21
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_22/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_22-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_22
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_23/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_23-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_23
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_24/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_24-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_24
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_25/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_25-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_25
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_26/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_26-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_26
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_27/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_27-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_27
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_28/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_28-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_28
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_2/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_2-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_2
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_3/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_3-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_3
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_4/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_4-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_4
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_5/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_5-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_5
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_6/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_6-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_6
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_7/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_7-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_7
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_8/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_8-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_8
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK93201_74cd2ea4_9/tombo.stats.alternative --per-read-statistics-basename single_fast5-output-FAK93201_74cd2ea4_9-guppy/tombo.mods.per_read.alternative --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK93201_74cd2ea4_9