module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_0 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_0
module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_10 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_10
module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_11 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_11
module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_12 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_12
module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_13 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_13
module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_14 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_14
module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_15 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_15
module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_16 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_16
module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_17 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_17
module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_18 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_18
module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_19 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_19
module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_1 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_1
module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_20 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_20
module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_21 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_21
module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_22 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_22
module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_23 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_23
module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_24 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_24
module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_25 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_25
module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_26 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_26
module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_27 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_27
module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_28 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_28
module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_2 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_2
module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_3 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_3
module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_4 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_4
module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_5 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_5
module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_6 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_6
module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_7 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_7
module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_8 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_8
module load py-numpy/1.20.3_py39; module load python/3.9.0; module load py-scipy/1.6.3_py39; module load libressl/2.5.3; export PATH=$PATH:/home/users/marinovg/.local/bin:/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin; megalodon --guppy-params "--model_file /oak/stanford/groups/akundaje/marinovg/programs/rerio-2021-12-29/basecall_models/res_dna_r941_min_modbases-all-context_v001.jsn" --guppy-config res_dna_r941_min_modbases-all-context_v001.cfg --outputs basecalls mod_basecalls per_read_mods --reference /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa --write-mods-text --output-directory megalodon-FAK93201_74cd2ea4_9 --overwrite --guppy-server-path /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecall_server FAK93201_74cd2ea4_9