#!/bin/bash
#SBATCH --job-name=zTSS-3
#SBATCH --output=zTSS.3.out
#SBATCH --error=zTSS.3.err
#SBATCH --time=12:00:00
#SBATCH -p akundaje,normal,owners,sfgf
#SBATCH --cpus-per-task=1
#SBATCH --mem=40000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py /oak/stanford/groups/akundaje/marinovg/papers/2020_SMAC-seq-yeast/2019-05-21-GM12878/hg19.refFlat-2012-10-22.no_haps.TSS-0bp.GM12878.FPKM-quintile5.bed 0 1 3 2000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2019_05_18_GM12878_SMAC/2019_05_18_GM12878_SMAC.m6A-only.cutoff_0.5.coverage.bgz signal-around-hg19-quintile5-TSS-0bp.2019_05_18_GM12878_SMAC.m6A.OLD.cutoff_0.5.coverage.minCov1 -minCov 1