tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_0/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_0-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_0-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_100/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_100-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_100-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_101/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_101-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_101-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_102/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_102-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_102-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_103/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_103-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_103-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_104/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_104-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_104-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_105/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_105-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_105-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_106/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_106-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_106-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_107/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_107-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_107-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_108/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_108-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_108-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_109/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_109-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_109-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_10/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_10-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_10-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_110/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_110-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_110-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_111/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_111-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_111-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_112/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_112-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_112-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_11/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_11-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_11-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_12/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_12-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_12-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_13/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_13-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_13-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_14/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_14-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_14-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_15/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_15-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_15-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_16/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_16-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_16-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_17/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_17-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_17-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_18/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_18-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_18-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_19/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_19-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_19-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_1/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_1-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_1-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_20/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_20-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_20-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_21/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_21-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_21-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_22/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_22-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_22-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_23/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_23-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_23-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_24/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_24-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_24-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_25/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_25-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_25-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_26/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_26-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_26-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_27/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_27-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_27-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_28/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_28-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_28-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_29/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_29-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_29-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_2/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_2-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_2-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_30/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_30-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_30-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_31/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_31-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_31-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_32/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_32-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_32-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_33/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_33-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_33-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_34/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_34-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_34-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_35/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_35-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_35-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_36/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_36-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_36-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_37/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_37-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_37-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_38/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_38-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_38-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_39/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_39-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_39-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_3/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_3-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_3-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_40/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_40-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_40-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_41/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_41-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_41-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_42/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_42-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_42-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_43/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_43-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_43-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_44/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_44-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_44-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_45/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_45-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_45-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_46/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_46-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_46-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_47/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_47-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_47-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_48/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_48-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_48-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_49/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_49-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_49-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_4/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_4-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_4-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_50/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_50-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_50-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_51/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_51-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_51-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_52/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_52-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_52-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_53/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_53-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_53-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_54/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_54-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_54-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_55/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_55-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_55-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_56/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_56-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_56-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_57/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_57-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_57-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_58/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_58-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_58-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_59/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_59-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_59-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_5/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_5-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_5-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_60/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_60-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_60-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_61/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_61-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_61-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_62/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_62-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_62-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_63/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_63-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_63-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_64/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_64-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_64-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_65/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_65-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_65-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_66/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_66-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_66-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_67/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_67-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_67-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_68/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_68-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_68-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_69/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_69-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_69-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_6/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_6-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_6-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_70/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_70-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_70-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_71/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_71-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_71-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_72/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_72-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_72-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_73/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_73-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_73-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_74/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_74-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_74-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_75/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_75-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_75-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_76/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_76-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_76-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_77/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_77-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_77-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_78/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_78-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_78-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_79/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_79-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_79-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_7/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_7-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_7-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_80/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_80-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_80-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_81/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_81-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_81-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_82/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_82-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_82-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_83/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_83-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_83-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_84/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_84-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_84-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_85/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_85-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_85-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_86/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_86-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_86-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_87/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_87-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_87-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_88/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_88-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_88-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_89/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_89-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_89-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_8/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_8-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_8-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_90/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_90-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_90-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_91/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_91-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_91-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_92/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_92-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_92-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_93/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_93-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_93-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_94/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_94-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_94-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_95/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_95-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_95-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_96/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_96-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_96-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_97/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_97-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_97-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_98/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_98-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_98-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_99/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_99-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_99-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-ant947_af494ad1_725d3af8_9/0 --fastq-filenames single_fast5-output-ant947_af494ad1_725d3af8_9-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-ant947_af494ad1_725d3af8_9-guppy/sequencing_summary.txt