python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L2636-H3K27ac_dox_4xTetO_mESC_spike_rep1.2x36mers.mm10.unique.bam SAMstats-L2636-H3K27ac_dox_4xTetO_mESC_spike_rep1.2x36mers.mm10.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L2637-H3K27ac_dox_4xTetO_mESC_spike_rep2.2x36mers.mm10.unique.bam SAMstats-L2637-H3K27ac_dox_4xTetO_mESC_spike_rep2.2x36mers.mm10.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L2638-H3K27ac_dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep1.2x36mers.mm10.unique.bam SAMstats-L2638-H3K27ac_dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep1.2x36mers.mm10.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L2639-H3K27ac_dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep2.2x36mers.mm10.unique.bam SAMstats-L2639-H3K27ac_dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep2.2x36mers.mm10.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L2646-dox_4xTetO_mESC_spike_rep1_input.2x36mers.mm10.unique.bam SAMstats-L2646-dox_4xTetO_mESC_spike_rep1_input.2x36mers.mm10.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L2647-dox_4xTetO_mESC_spike_rep2_input.2x36mers.mm10.unique.bam SAMstats-L2647-dox_4xTetO_mESC_spike_rep2_input.2x36mers.mm10.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L2648-dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep1_input.2x36mers.mm10.unique.bam SAMstats-L2648-dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep1_input.2x36mers.mm10.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L2649-dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep2_input.2x36mers.mm10.unique.bam SAMstats-L2649-dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep2_input.2x36mers.mm10.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L2636-H3K27ac_dox_4xTetO_mESC_spike_rep1.2x36mers.mm10.unique.dedup.bam SAMstats-L2636-H3K27ac_dox_4xTetO_mESC_spike_rep1.2x36mers.mm10.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L2637-H3K27ac_dox_4xTetO_mESC_spike_rep2.2x36mers.mm10.unique.dedup.bam SAMstats-L2637-H3K27ac_dox_4xTetO_mESC_spike_rep2.2x36mers.mm10.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L2638-H3K27ac_dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep1.2x36mers.mm10.unique.dedup.bam SAMstats-L2638-H3K27ac_dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep1.2x36mers.mm10.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L2639-H3K27ac_dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep2.2x36mers.mm10.unique.dedup.bam SAMstats-L2639-H3K27ac_dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep2.2x36mers.mm10.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L2646-dox_4xTetO_mESC_spike_rep1_input.2x36mers.mm10.unique.dedup.bam SAMstats-L2646-dox_4xTetO_mESC_spike_rep1_input.2x36mers.mm10.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L2647-dox_4xTetO_mESC_spike_rep2_input.2x36mers.mm10.unique.dedup.bam SAMstats-L2647-dox_4xTetO_mESC_spike_rep2_input.2x36mers.mm10.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L2648-dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep1_input.2x36mers.mm10.unique.dedup.bam SAMstats-L2648-dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep1_input.2x36mers.mm10.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L2649-dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep2_input.2x36mers.mm10.unique.dedup.bam SAMstats-L2649-dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep2_input.2x36mers.mm10.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L2636-H3K27ac_dox_4xTetO_mESC_spike_rep1.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes L2636-H3K27ac_dox_4xTetO_mESC_spike_rep1.2x36mers.mm10.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L2637-H3K27ac_dox_4xTetO_mESC_spike_rep2.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes L2637-H3K27ac_dox_4xTetO_mESC_spike_rep2.2x36mers.mm10.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L2638-H3K27ac_dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep1.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes L2638-H3K27ac_dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep1.2x36mers.mm10.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L2639-H3K27ac_dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep2.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes L2639-H3K27ac_dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep2.2x36mers.mm10.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L2646-dox_4xTetO_mESC_spike_rep1_input.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes L2646-dox_4xTetO_mESC_spike_rep1_input.2x36mers.mm10.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L2647-dox_4xTetO_mESC_spike_rep2_input.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes L2647-dox_4xTetO_mESC_spike_rep2_input.2x36mers.mm10.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L2648-dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep1_input.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes L2648-dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep1_input.2x36mers.mm10.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L2649-dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep2_input.2x36mers.mm10.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes L2649-dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep2_input.2x36mers.mm10.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L2636-H3K27ac_dox_4xTetO_mESC_spike_rep1.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes L2636-H3K27ac_dox_4xTetO_mESC_spike_rep1.2x36mers.mm10.unique.dedup.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L2637-H3K27ac_dox_4xTetO_mESC_spike_rep2.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes L2637-H3K27ac_dox_4xTetO_mESC_spike_rep2.2x36mers.mm10.unique.dedup.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L2638-H3K27ac_dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep1.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes L2638-H3K27ac_dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep1.2x36mers.mm10.unique.dedup.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L2639-H3K27ac_dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep2.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes L2639-H3K27ac_dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep2.2x36mers.mm10.unique.dedup.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L2646-dox_4xTetO_mESC_spike_rep1_input.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes L2646-dox_4xTetO_mESC_spike_rep1_input.2x36mers.mm10.unique.dedup.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L2647-dox_4xTetO_mESC_spike_rep2_input.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes L2647-dox_4xTetO_mESC_spike_rep2_input.2x36mers.mm10.unique.dedup.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L2648-dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep1_input.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes L2648-dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep1_input.2x36mers.mm10.unique.dedup.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L2649-dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep2_input.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes L2649-dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep2_input.2x36mers.mm10.unique.dedup.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L2636-H3K27ac_dox_4xTetO_mESC_spike_rep1.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes L2636-H3K27ac_dox_4xTetO_mESC_spike_rep1.2x36mers.mm10.unique.dedup.wig -RPM -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L2637-H3K27ac_dox_4xTetO_mESC_spike_rep2.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes L2637-H3K27ac_dox_4xTetO_mESC_spike_rep2.2x36mers.mm10.unique.dedup.wig -RPM -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L2638-H3K27ac_dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep1.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes L2638-H3K27ac_dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep1.2x36mers.mm10.unique.dedup.wig -RPM -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L2639-H3K27ac_dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep2.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes L2639-H3K27ac_dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep2.2x36mers.mm10.unique.dedup.wig -RPM -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L2646-dox_4xTetO_mESC_spike_rep1_input.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes L2646-dox_4xTetO_mESC_spike_rep1_input.2x36mers.mm10.unique.dedup.wig -RPM -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L2647-dox_4xTetO_mESC_spike_rep2_input.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes L2647-dox_4xTetO_mESC_spike_rep2_input.2x36mers.mm10.unique.dedup.wig -RPM -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L2648-dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep1_input.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes L2648-dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep1_input.2x36mers.mm10.unique.dedup.wig -RPM -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L2649-dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep2_input.2x36mers.mm10.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes L2649-dox_p300_inhibitor_A485_4xTetO_mESC_spike_rep2_input.2x36mers.mm10.unique.dedup.wig -RPM -notitle -uniqueBAM