python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L219-Pol2_Native_methylated_ChIP-SMF/BD_L219-Pol2_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L219-Pol2_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L220-Pol2_4H8_Native_methylated_ChIP-SMF/BD_L220-Pol2_4H8_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L220-Pol2_4H8_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L221-Pol2_methylated_fix_after_ChIP-SMF/BD_L221-Pol2_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L221-Pol2_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L219-Pol2_Native_methylated_ChIP-SMF/BD_L219-Pol2_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L219-Pol2_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L220-Pol2_4H8_Native_methylated_ChIP-SMF/BD_L220-Pol2_4H8_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L220-Pol2_4H8_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L221-Pol2_methylated_fix_after_ChIP-SMF/BD_L221-Pol2_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L221-Pol2_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L222-Pol2_4H8_methylated_fix_after_ChIP-SMF/BD_L222-Pol2_4H8_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L222-Pol2_4H8_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L223-DRB_Pol2_Native_methylated_ChIP-SMF/BD_L223-DRB_Pol2_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L223-DRB_Pol2_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L224-DRB_Pol2_4H8_Native_methylated_ChIP-SMF/BD_L224-DRB_Pol2_4H8_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L224-DRB_Pol2_4H8_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L222-Pol2_4H8_methylated_fix_after_ChIP-SMF/BD_L222-Pol2_4H8_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L222-Pol2_4H8_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L223-DRB_Pol2_Native_methylated_ChIP-SMF/BD_L223-DRB_Pol2_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L223-DRB_Pol2_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L224-DRB_Pol2_4H8_Native_methylated_ChIP-SMF/BD_L224-DRB_Pol2_4H8_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L224-DRB_Pol2_4H8_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L225-DRB_Pol2_methylated_fix_after_ChIP-SMF/BD_L225-DRB_Pol2_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L225-DRB_Pol2_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L226-DRB_Pol2_4H8_methylated_fix_after_ChIP-SMF/BD_L226-DRB_Pol2_4H8_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L226-DRB_Pol2_4H8_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L227-H32K7ac_Native_methylated_ChIP-SMF/BD_L227-H32K7ac_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L227-H32K7ac_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L225-DRB_Pol2_methylated_fix_after_ChIP-SMF/BD_L225-DRB_Pol2_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L225-DRB_Pol2_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L226-DRB_Pol2_4H8_methylated_fix_after_ChIP-SMF/BD_L226-DRB_Pol2_4H8_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L226-DRB_Pol2_4H8_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L227-H32K7ac_Native_methylated_ChIP-SMF/BD_L227-H32K7ac_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L227-H32K7ac_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L228-H32K7ac_methylated_fix_after_ChIP-SMF/BD_L228-H32K7ac_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L228-H32K7ac_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L229-Input_Native_methylated_ChIP-SMF/BD_L229-Input_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L229-Input_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L230-Input_Native_DRB_ChIP-SMF/BD_L230-Input_Native_DRB_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L230-Input_Native_DRB_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L228-H32K7ac_methylated_fix_after_ChIP-SMF/BD_L228-H32K7ac_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L228-H32K7ac_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L229-Input_Native_methylated_ChIP-SMF/BD_L229-Input_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L229-Input_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L230-Input_Native_DRB_ChIP-SMF/BD_L230-Input_Native_DRB_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L230-Input_Native_DRB_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L231-Input_methylated_fix_after_ChIP-SMF/BD_L231-Input_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L231-Input_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L232-Input_methylated_DRB_ChIP-SMF/BD_L232-Input_methylated_DRB_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L232-Input_methylated_DRB_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L233-Pol2_unmethylated_fix_after-ChIP-seq/BD_L233-Pol2_unmethylated_fix_after-ChIP-seq.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L233-Pol2_unmethylated_fix_after-ChIP-seq.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L231-Input_methylated_fix_after_ChIP-SMF/BD_L231-Input_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L231-Input_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L232-Input_methylated_DRB_ChIP-SMF/BD_L232-Input_methylated_DRB_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L232-Input_methylated_DRB_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L233-Pol2_unmethylated_fix_after-ChIP-seq/BD_L233-Pol2_unmethylated_fix_after-ChIP-seq.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L233-Pol2_unmethylated_fix_after-ChIP-seq.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L234-H32K7ac_unmethylated_fix_after-ChIP-seq/BD_L234-H32K7ac_unmethylated_fix_after-ChIP-seq.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L234-H32K7ac_unmethylated_fix_after-ChIP-seq.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L235-Input_unmethylated-ChIP-seq/BD_L235-Input_unmethylated-ChIP-seq.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L235-Input_unmethylated-ChIP-seq.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L234-H32K7ac_unmethylated_fix_after-ChIP-seq/BD_L234-H32K7ac_unmethylated_fix_after-ChIP-seq.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L234-H32K7ac_unmethylated_fix_after-ChIP-seq.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM0.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L235-Input_unmethylated-ChIP-seq/BD_L235-Input_unmethylated-ChIP-seq.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L235-Input_unmethylated-ChIP-seq.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-top10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L219-Pol2_Native_methylated_ChIP-SMF/BD_L219-Pol2_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L219-Pol2_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L220-Pol2_4H8_Native_methylated_ChIP-SMF/BD_L220-Pol2_4H8_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L220-Pol2_4H8_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L221-Pol2_methylated_fix_after_ChIP-SMF/BD_L221-Pol2_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L221-Pol2_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L219-Pol2_Native_methylated_ChIP-SMF/BD_L219-Pol2_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L219-Pol2_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L220-Pol2_4H8_Native_methylated_ChIP-SMF/BD_L220-Pol2_4H8_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L220-Pol2_4H8_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L221-Pol2_methylated_fix_after_ChIP-SMF/BD_L221-Pol2_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L221-Pol2_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L222-Pol2_4H8_methylated_fix_after_ChIP-SMF/BD_L222-Pol2_4H8_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L222-Pol2_4H8_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L223-DRB_Pol2_Native_methylated_ChIP-SMF/BD_L223-DRB_Pol2_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L223-DRB_Pol2_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L224-DRB_Pol2_4H8_Native_methylated_ChIP-SMF/BD_L224-DRB_Pol2_4H8_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L224-DRB_Pol2_4H8_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L222-Pol2_4H8_methylated_fix_after_ChIP-SMF/BD_L222-Pol2_4H8_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L222-Pol2_4H8_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L223-DRB_Pol2_Native_methylated_ChIP-SMF/BD_L223-DRB_Pol2_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L223-DRB_Pol2_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L224-DRB_Pol2_4H8_Native_methylated_ChIP-SMF/BD_L224-DRB_Pol2_4H8_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L224-DRB_Pol2_4H8_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L225-DRB_Pol2_methylated_fix_after_ChIP-SMF/BD_L225-DRB_Pol2_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L225-DRB_Pol2_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L226-DRB_Pol2_4H8_methylated_fix_after_ChIP-SMF/BD_L226-DRB_Pol2_4H8_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L226-DRB_Pol2_4H8_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L227-H32K7ac_Native_methylated_ChIP-SMF/BD_L227-H32K7ac_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L227-H32K7ac_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L225-DRB_Pol2_methylated_fix_after_ChIP-SMF/BD_L225-DRB_Pol2_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L225-DRB_Pol2_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L226-DRB_Pol2_4H8_methylated_fix_after_ChIP-SMF/BD_L226-DRB_Pol2_4H8_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L226-DRB_Pol2_4H8_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L227-H32K7ac_Native_methylated_ChIP-SMF/BD_L227-H32K7ac_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L227-H32K7ac_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L228-H32K7ac_methylated_fix_after_ChIP-SMF/BD_L228-H32K7ac_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L228-H32K7ac_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L229-Input_Native_methylated_ChIP-SMF/BD_L229-Input_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L229-Input_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L230-Input_Native_DRB_ChIP-SMF/BD_L230-Input_Native_DRB_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L230-Input_Native_DRB_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L228-H32K7ac_methylated_fix_after_ChIP-SMF/BD_L228-H32K7ac_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L228-H32K7ac_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L229-Input_Native_methylated_ChIP-SMF/BD_L229-Input_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L229-Input_Native_methylated_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L230-Input_Native_DRB_ChIP-SMF/BD_L230-Input_Native_DRB_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L230-Input_Native_DRB_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L231-Input_methylated_fix_after_ChIP-SMF/BD_L231-Input_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L231-Input_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L232-Input_methylated_DRB_ChIP-SMF/BD_L232-Input_methylated_DRB_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L232-Input_methylated_DRB_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L233-Pol2_unmethylated_fix_after-ChIP-seq/BD_L233-Pol2_unmethylated_fix_after-ChIP-seq.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L233-Pol2_unmethylated_fix_after-ChIP-seq.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L231-Input_methylated_fix_after_ChIP-SMF/BD_L231-Input_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L231-Input_methylated_fix_after_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L232-Input_methylated_DRB_ChIP-SMF/BD_L232-Input_methylated_DRB_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L232-Input_methylated_DRB_ChIP-SMF.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L233-Pol2_unmethylated_fix_after-ChIP-seq/BD_L233-Pol2_unmethylated_fix_after-ChIP-seq.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L233-Pol2_unmethylated_fix_after-ChIP-seq.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L234-H32K7ac_unmethylated_fix_after-ChIP-seq/BD_L234-H32K7ac_unmethylated_fix_after-ChIP-seq.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L234-H32K7ac_unmethylated_fix_after-ChIP-seq.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L235-Input_unmethylated-ChIP-seq/BD_L235-Input_unmethylated-ChIP-seq.2x150mers.bwameth.hg38.dedup_CpG.bedGraph.gz BD_L235-Input_unmethylated-ChIP-seq.2x150mers.bwameth.hg38.dedup_CpG.CpG-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L234-H32K7ac_unmethylated_fix_after-ChIP-seq/BD_L234-H32K7ac_unmethylated_fix_after-ChIP-seq.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L234-H32K7ac_unmethylated_fix_after-ChIP-seq.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-bottom10percent.TSS_profile -bismark.cov &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/signalAroundPeaks-nano.py K562-13004.ranked.TPM9.TSS-0bp.bed 0 1 3 1000 10 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-PBAT-NOME_dSMF/BD_L235-Input_unmethylated-ChIP-seq/BD_L235-Input_unmethylated-ChIP-seq.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.bedGraph.gz BD_L235-Input_unmethylated-ChIP-seq.2x150mers.bwameth.hg38.dedup_CHH.GpC-only.K562-bottom10percent.TSS_profile -bismark.cov &