## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_EtOH_2-GSM1981394.trimgalore.bwameth.hg38.bam] OUTPUT=07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_EtOH_2-GSM1981394.trimgalore.bwameth.hg38.dedup.bam METRICS_FILE=07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_EtOH_2-GSM1981394.trimgalore.bwameth.hg38.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Jun 21 10:41:16 PDT 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
	0	35599600	0	0	1019506	0	0.028638	609617908

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.943276
3.0	2.833045
4.0	3.672343
5.0	4.464032
6.0	5.210813
7.0	5.915234
8.0	6.579697
9.0	7.206469
10.0	7.797688
11.0	8.35537
12.0	8.881418
13.0	9.377627
14.0	9.845688
15.0	10.287199
16.0	10.703666
17.0	11.096509
18.0	11.467069
19.0	11.816608
20.0	12.14632
21.0	12.45733
22.0	12.750698
23.0	13.027424
24.0	13.288454
25.0	13.534677
26.0	13.766933
27.0	13.986015
28.0	14.192669
29.0	14.387601
30.0	14.571476
31.0	14.74492
32.0	14.908527
33.0	15.062852
34.0	15.208424
35.0	15.345738
36.0	15.475263
37.0	15.597441
38.0	15.712688
39.0	15.821399
40.0	15.923942
41.0	16.020669
42.0	16.111909
43.0	16.197974
44.0	16.279157
45.0	16.355735
46.0	16.427968
47.0	16.496105
48.0	16.560376
49.0	16.621002
50.0	16.678189
51.0	16.732132
52.0	16.783015
53.0	16.831012
54.0	16.876286
55.0	16.918992
56.0	16.959275
57.0	16.997274
58.0	17.033117
59.0	17.066927
60.0	17.098819
61.0	17.128902
62.0	17.157279
63.0	17.184045
64.0	17.209294
65.0	17.23311
66.0	17.255576
67.0	17.276767
68.0	17.296756
69.0	17.315611
70.0	17.333397
71.0	17.350174
72.0	17.365999
73.0	17.380926
74.0	17.395007
75.0	17.408289
76.0	17.420817
77.0	17.432635
78.0	17.443783
79.0	17.454298
80.0	17.464217
81.0	17.473573
82.0	17.482398
83.0	17.490723
84.0	17.498576
85.0	17.505983
86.0	17.51297
87.0	17.51956
88.0	17.525777
89.0	17.531641
90.0	17.537173
91.0	17.542391
92.0	17.547312
93.0	17.551955
94.0	17.556334
95.0	17.560465
96.0	17.564361
97.0	17.568037
98.0	17.571504
99.0	17.574774
100.0	17.577859