## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_EtOH_1-GSM1981393.trimgalore.bwameth.hg38.bam] OUTPUT=07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_EtOH_1-GSM1981393.trimgalore.bwameth.hg38.dedup.bam METRICS_FILE=07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_EtOH_1-GSM1981393.trimgalore.bwameth.hg38.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Jun 21 10:41:17 PDT 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
	0	35989956	0	0	1040802	0	0.028919	610194060

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.942725
3.0	2.831454
4.0	3.669281
5.0	4.459121
6.0	5.203723
7.0	5.905677
8.0	6.567427
9.0	7.191274
10.0	7.779391
11.0	8.333822
12.0	8.856499
13.0	9.349239
14.0	9.813757
15.0	10.251669
16.0	10.6645
17.0	11.053686
18.0	11.42058
19.0	11.766461
20.0	12.092532
21.0	12.399926
22.0	12.689715
23.0	12.962905
24.0	13.220449
25.0	13.463241
26.0	13.692128
27.0	13.907905
28.0	14.111323
29.0	14.30309
30.0	14.483874
31.0	14.654303
32.0	14.814971
33.0	14.966436
34.0	15.109227
35.0	15.243839
36.0	15.37074
37.0	15.490374
38.0	15.603155
39.0	15.709477
40.0	15.80971
41.0	15.904201
42.0	15.99328
43.0	16.077258
44.0	16.156425
45.0	16.231058
46.0	16.301417
47.0	16.367745
48.0	16.430275
49.0	16.489223
50.0	16.544795
51.0	16.597184
52.0	16.646572
53.0	16.693132
54.0	16.737025
55.0	16.778404
56.0	16.817413
57.0	16.854188
58.0	16.888856
59.0	16.921539
60.0	16.95235
61.0	16.981396
62.0	17.008778
63.0	17.034593
64.0	17.058928
65.0	17.08187
66.0	17.103498
67.0	17.123887
68.0	17.143108
69.0	17.161228
70.0	17.178311
71.0	17.194415
72.0	17.209597
73.0	17.223909
74.0	17.237401
75.0	17.250121
76.0	17.262112
77.0	17.273417
78.0	17.284073
79.0	17.29412
80.0	17.303591
81.0	17.31252
82.0	17.320937
83.0	17.328872
84.0	17.336353
85.0	17.343405
86.0	17.350053
87.0	17.356321
88.0	17.362229
89.0	17.367799
90.0	17.37305
91.0	17.378001
92.0	17.382667
93.0	17.387067
94.0	17.391214
95.0	17.395124
96.0	17.39881
97.0	17.402285
98.0	17.405561
99.0	17.408649
100.0	17.411561