## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_16hr_1-GSM1981399.trimgalore.bwameth.hg38.bam] OUTPUT=07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_16hr_1-GSM1981399.trimgalore.bwameth.hg38.dedup.bam METRICS_FILE=07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_16hr_1-GSM1981399.trimgalore.bwameth.hg38.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Jun 21 10:41:16 PDT 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
	0	28153395	0	0	799097	0	0.028384	486513782

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.943775
3.0	2.834486
4.0	3.675117
5.0	4.468483
6.0	5.217242
7.0	5.923902
8.0	6.59083
9.0	7.220259
10.0	7.814299
11.0	8.374939
12.0	8.904057
13.0	9.403426
14.0	9.874717
15.0	10.31951
16.0	10.739294
17.0	11.135476
18.0	11.509382
19.0	11.862266
20.0	12.195308
21.0	12.509626
22.0	12.80627
23.0	13.086236
24.0	13.350461
25.0	13.59983
26.0	13.835178
27.0	14.057293
28.0	14.26692
29.0	14.464761
30.0	14.651478
31.0	14.827696
32.0	14.994007
33.0	15.150967
34.0	15.299102
35.0	15.438908
36.0	15.570854
37.0	15.695381
38.0	15.812906
39.0	15.923823
40.0	16.028504
41.0	16.1273
42.0	16.22054
43.0	16.308538
44.0	16.391589
45.0	16.46997
46.0	16.543944
47.0	16.613758
48.0	16.679648
49.0	16.741832
50.0	16.800521
51.0	16.855909
52.0	16.908184
53.0	16.957519
54.0	17.00408
55.0	17.048024
56.0	17.089497
57.0	17.128638
58.0	17.165578
59.0	17.200441
60.0	17.233344
61.0	17.264397
62.0	17.293704
63.0	17.321364
64.0	17.347468
65.0	17.372104
66.0	17.395356
67.0	17.417299
68.0	17.43801
69.0	17.457555
70.0	17.476002
71.0	17.493412
72.0	17.509843
73.0	17.525349
74.0	17.539984
75.0	17.553797
76.0	17.566832
77.0	17.579135
78.0	17.590746
79.0	17.601704
80.0	17.612046
81.0	17.621807
82.0	17.631018
83.0	17.639712
84.0	17.647917
85.0	17.655661
86.0	17.662969
87.0	17.669866
88.0	17.676376
89.0	17.682519
90.0	17.688318
91.0	17.69379
92.0	17.698954
93.0	17.703828
94.0	17.708428
95.0	17.71277
96.0	17.716867
97.0	17.720734
98.0	17.724384
99.0	17.727828
100.0	17.731079