## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023.trimgalore.bwameth.hg38.bam] OUTPUT=04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023.trimgalore.bwameth.hg38.dedup.bam METRICS_FILE=04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023.trimgalore.bwameth.hg38.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Jun 21 10:41:16 PDT 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
	0	150879291	0	0	6067237	0	0.040213	1825386076

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.920668
3.0	2.768297
4.0	3.548681
5.0	4.267156
6.0	4.928633
7.0	5.537633
8.0	6.09832
9.0	6.614527
10.0	7.089781
11.0	7.527332
12.0	7.930172
13.0	8.301053
14.0	8.642512
15.0	8.956882
16.0	9.246312
17.0	9.512781
18.0	9.75811
19.0	9.983977
20.0	10.191925
21.0	10.383376
22.0	10.559639
23.0	10.721919
24.0	10.871325
25.0	11.008878
26.0	11.135518
27.0	11.252112
28.0	11.359456
29.0	11.458285
30.0	11.549273
31.0	11.633042
32.0	11.710166
33.0	11.781172
34.0	11.846545
35.0	11.906731
36.0	11.962143
37.0	12.013159
38.0	12.060128
39.0	12.10337
40.0	12.143182
41.0	12.179836
42.0	12.213581
43.0	12.24465
44.0	12.273254
45.0	12.299589
46.0	12.323834
47.0	12.346156
48.0	12.366707
49.0	12.385628
50.0	12.403048
51.0	12.419086
52.0	12.433851
53.0	12.447445
54.0	12.459961
55.0	12.471484
56.0	12.482092
57.0	12.49186
58.0	12.500852
59.0	12.509131
60.0	12.516753
61.0	12.52377
62.0	12.530231
63.0	12.536179
64.0	12.541655
65.0	12.546697
66.0	12.551339
67.0	12.555612
68.0	12.559547
69.0	12.563169
70.0	12.566504
71.0	12.569575
72.0	12.572402
73.0	12.575004
74.0	12.5774
75.0	12.579606
76.0	12.581637
77.0	12.583507
78.0	12.585229
79.0	12.586814
80.0	12.588273
81.0	12.589617
82.0	12.590854
83.0	12.591992
84.0	12.593041
85.0	12.594006
86.0	12.594895
87.0	12.595713
88.0	12.596466
89.0	12.59716
90.0	12.597798
91.0	12.598386
92.0	12.598927
93.0	12.599426
94.0	12.599884
95.0	12.600307
96.0	12.600695
97.0	12.601053
98.0	12.601383
99.0	12.601687
100.0	12.601966