## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851.trimgalore.bwameth.hg38.bam] OUTPUT=03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851.trimgalore.bwameth.hg38.dedup.bam METRICS_FILE=03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851.trimgalore.bwameth.hg38.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Jun 21 10:41:16 PDT 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
	0	214551159	0	0	2283823	0	0.010645	10006237872

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.978786
3.0	2.93681
4.0	3.874509
5.0	4.792318
6.0	5.690656
7.0	6.569937
8.0	7.430566
9.0	8.272937
10.0	9.097439
11.0	9.904451
12.0	10.694343
13.0	11.467478
14.0	12.224213
15.0	12.964895
16.0	13.689864
17.0	14.399454
18.0	15.093991
19.0	15.773795
20.0	16.439177
21.0	17.090445
22.0	17.727897
23.0	18.351826
24.0	18.962519
25.0	19.560258
26.0	20.145316
27.0	20.717964
28.0	21.278463
29.0	21.827072
30.0	22.364044
31.0	22.889624
32.0	23.404055
33.0	23.907573
34.0	24.40041
35.0	24.882792
36.0	25.354941
37.0	25.817074
38.0	26.269403
39.0	26.712137
40.0	27.145479
41.0	27.569628
42.0	27.98478
43.0	28.391125
44.0	28.78885
45.0	29.178137
46.0	29.559167
47.0	29.932114
48.0	30.297149
49.0	30.65444
50.0	31.004152
51.0	31.346446
52.0	31.681478
53.0	32.009403
54.0	32.330371
55.0	32.644531
56.0	32.952026
57.0	33.252998
58.0	33.547586
59.0	33.835924
60.0	34.118146
61.0	34.39438
62.0	34.664755
63.0	34.929394
64.0	35.188419
65.0	35.44195
66.0	35.690102
67.0	35.93299
68.0	36.170726
69.0	36.403418
70.0	36.631174
71.0	36.854098
72.0	37.072294
73.0	37.285861
74.0	37.494897
75.0	37.699499
76.0	37.899761
77.0	38.095774
78.0	38.287629
79.0	38.475415
80.0	38.659217
81.0	38.839119
82.0	39.015206
83.0	39.187556
84.0	39.356251
85.0	39.521367
86.0	39.682981
87.0	39.841166
88.0	39.995995
89.0	40.14754
90.0	40.29587
91.0	40.441054
92.0	40.583157
93.0	40.722247
94.0	40.858385
95.0	40.991636
96.0	41.12206
97.0	41.249717
98.0	41.374666
99.0	41.496964
100.0	41.616669