## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850.trimgalore.bwameth.hg38.bam] OUTPUT=03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850.trimgalore.bwameth.hg38.dedup.bam METRICS_FILE=03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850.trimgalore.bwameth.hg38.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Jun 21 10:41:16 PDT 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
	0	216543954	0	0	5523847	0	0.025509	4171948431

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.949419
3.0	2.850816
4.0	3.70662
5.0	4.519137
6.0	5.290555
7.0	6.022955
8.0	6.71831
9.0	7.378493
10.0	8.005284
11.0	8.600371
12.0	9.165358
13.0	9.701768
14.0	10.211045
15.0	10.694563
16.0	11.153625
17.0	11.589467
18.0	12.003263
19.0	12.39613
20.0	12.769125
21.0	13.123253
22.0	13.45947
23.0	13.77868
24.0	14.081745
25.0	14.36948
26.0	14.642662
27.0	14.902026
28.0	15.148271
29.0	15.38206
30.0	15.604025
31.0	15.814762
32.0	16.01484
33.0	16.204798
34.0	16.385148
35.0	16.556376
36.0	16.718943
37.0	16.873287
38.0	17.019824
39.0	17.158949
40.0	17.291037
41.0	17.416444
42.0	17.535508
43.0	17.64855
44.0	17.755874
45.0	17.857769
46.0	17.95451
47.0	18.046359
48.0	18.133561
49.0	18.216353
50.0	18.294957
51.0	18.369585
52.0	18.440438
53.0	18.507708
54.0	18.571575
55.0	18.632211
56.0	18.689781
57.0	18.744438
58.0	18.796332
59.0	18.8456
60.0	18.892376
61.0	18.936786
62.0	18.97895
63.0	19.018981
64.0	19.056988
65.0	19.093072
66.0	19.127331
67.0	19.159857
68.0	19.190738
69.0	19.220057
70.0	19.247893
71.0	19.274321
72.0	19.299412
73.0	19.323234
74.0	19.345851
75.0	19.367324
76.0	19.387711
77.0	19.407067
78.0	19.425444
79.0	19.442891
80.0	19.459456
81.0	19.475183
82.0	19.490114
83.0	19.50429
84.0	19.51775
85.0	19.530528
86.0	19.54266
87.0	19.554179
88.0	19.565114
89.0	19.575497
90.0	19.585354
91.0	19.594713
92.0	19.603599
93.0	19.612035
94.0	19.620044
95.0	19.627649
96.0	19.634868
97.0	19.641723
98.0	19.64823
99.0	19.654409
100.0	19.660275