## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127.trimgalore.bwameth.hg38.bam] OUTPUT=02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127.trimgalore.bwameth.hg38.dedup.bam METRICS_FILE=02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127.trimgalore.bwameth.hg38.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Jun 21 10:41:13 PDT 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
	0	236834985	0	0	2331839	0	0.009846	11948086623

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.980373
3.0	2.941505
4.0	3.883772
5.0	4.807546
6.0	5.713189
7.0	6.601057
8.0	7.471499
9.0	8.324858
10.0	9.161467
11.0	9.981656
12.0	10.785748
13.0	11.574058
14.0	12.346896
15.0	13.104565
16.0	13.847364
17.0	14.575584
18.0	15.289512
19.0	15.989427
20.0	16.675605
21.0	17.348316
22.0	18.007823
23.0	18.654386
24.0	19.28826
25.0	19.909692
26.0	20.518928
27.0	21.116206
28.0	21.701762
29.0	22.275825
30.0	22.838621
31.0	23.390371
32.0	23.931292
33.0	24.461597
34.0	24.981493
35.0	25.491185
36.0	25.990874
37.0	26.480755
38.0	26.961022
39.0	27.431862
40.0	27.893461
41.0	28.346001
42.0	28.789659
43.0	29.224609
44.0	29.651022
45.0	30.069066
46.0	30.478906
47.0	30.880701
48.0	31.274611
49.0	31.660789
50.0	32.039388
51.0	32.410556
52.0	32.774439
53.0	33.131181
54.0	33.480921
55.0	33.823796
56.0	34.159942
57.0	34.48949
58.0	34.812571
59.0	35.12931
60.0	35.439833
61.0	35.744261
62.0	36.042714
63.0	36.33531
64.0	36.622163
65.0	36.903385
66.0	37.179089
67.0	37.449381
68.0	37.714368
69.0	37.974154
70.0	38.228842
71.0	38.47853
72.0	38.723318
73.0	38.963302
74.0	39.198576
75.0	39.429232
76.0	39.655361
77.0	39.877051
78.0	40.094391
79.0	40.307465
80.0	40.516357
81.0	40.721149
82.0	40.921922
83.0	41.118754
84.0	41.311723
85.0	41.500904
86.0	41.686373
87.0	41.868201
88.0	42.046461
89.0	42.221222
90.0	42.392553
91.0	42.560521
92.0	42.725193
93.0	42.886632
94.0	43.044903
95.0	43.200068
96.0	43.352187
97.0	43.501321
98.0	43.647528
99.0	43.790865
100.0	43.931389