## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126.trimgalore.bwameth.hg38.bam] OUTPUT=02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126.trimgalore.bwameth.hg38.dedup.bam METRICS_FILE=02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126.trimgalore.bwameth.hg38.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Jun 21 10:41:15 PDT 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
	0	229457146	0	0	4933929	0	0.021503	5258800374

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.957305
3.0	2.873739
4.0	3.751045
5.0	4.590895
6.0	5.394888
7.0	6.164554
8.0	6.90136
9.0	7.606708
10.0	8.281942
11.0	8.928346
12.0	9.547153
13.0	10.139539
14.0	10.706634
15.0	11.249517
16.0	11.769221
17.0	12.266737
18.0	12.743012
19.0	13.198952
20.0	13.635426
21.0	14.053265
22.0	14.453264
23.0	14.836185
24.0	15.202758
25.0	15.55368
26.0	15.889619
27.0	16.211216
28.0	16.519082
29.0	16.813804
30.0	17.095942
31.0	17.366035
32.0	17.624597
33.0	17.872119
34.0	18.109073
35.0	18.33591
36.0	18.553063
37.0	18.760944
38.0	18.95995
39.0	19.15046
40.0	19.332836
41.0	19.507425
42.0	19.67456
43.0	19.834559
44.0	19.987728
45.0	20.134356
46.0	20.274725
47.0	20.4091
48.0	20.537739
49.0	20.660885
50.0	20.778774
51.0	20.891629
52.0	20.999666
53.0	21.10309
54.0	21.202099
55.0	21.29688
56.0	21.387615
57.0	21.474476
58.0	21.557628
59.0	21.637231
60.0	21.713434
61.0	21.786384
62.0	21.85622
63.0	21.923074
64.0	21.987074
65.0	22.048341
66.0	22.106992
67.0	22.163139
68.0	22.216889
69.0	22.268345
70.0	22.317603
71.0	22.364758
72.0	22.4099
73.0	22.453115
74.0	22.494485
75.0	22.534088
76.0	22.572001
77.0	22.608295
78.0	22.643039
79.0	22.6763
80.0	22.708141
81.0	22.738622
82.0	22.767802
83.0	22.795736
84.0	22.822478
85.0	22.848077
86.0	22.872584
87.0	22.896045
88.0	22.918504
89.0	22.940004
90.0	22.960586
91.0	22.980289
92.0	22.999151
93.0	23.017208
94.0	23.034494
95.0	23.051042
96.0	23.066883
97.0	23.082048
98.0	23.096565
99.0	23.110463
100.0	23.123767