## net.sf.picard.metrics.StringHeader # net.sf.picard.sam.MarkDuplicates INPUT=[01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400.trimgalore.bwameth.hg38.bam] OUTPUT=01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400.trimgalore.bwameth.hg38.dedup.bam METRICS_FILE=01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400.trimgalore.bwameth.hg38.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false ## net.sf.picard.metrics.StringHeader # Started on: Mon Jun 21 10:41:15 PDT 2021 ## METRICS CLASS net.sf.picard.sam.DuplicationMetrics LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE 0 310973504 0 0 182694357 0 0.587492 145412132 ## HISTOGRAM java.lang.Double BIN VALUE 1.0 1 2.0 1.117824 3.0 1.131706 4.0 1.133342 5.0 1.133534 6.0 1.133557 7.0 1.13356 8.0 1.13356 9.0 1.13356 10.0 1.13356 11.0 1.13356 12.0 1.13356 13.0 1.13356 14.0 1.13356 15.0 1.13356 16.0 1.13356 17.0 1.13356 18.0 1.13356 19.0 1.13356 20.0 1.13356 21.0 1.13356 22.0 1.13356 23.0 1.13356 24.0 1.13356 25.0 1.13356 26.0 1.13356 27.0 1.13356 28.0 1.13356 29.0 1.13356 30.0 1.13356 31.0 1.13356 32.0 1.13356 33.0 1.13356 34.0 1.13356 35.0 1.13356 36.0 1.13356 37.0 1.13356 38.0 1.13356 39.0 1.13356 40.0 1.13356 41.0 1.13356 42.0 1.13356 43.0 1.13356 44.0 1.13356 45.0 1.13356 46.0 1.13356 47.0 1.13356 48.0 1.13356 49.0 1.13356 50.0 1.13356 51.0 1.13356 52.0 1.13356 53.0 1.13356 54.0 1.13356 55.0 1.13356 56.0 1.13356 57.0 1.13356 58.0 1.13356 59.0 1.13356 60.0 1.13356 61.0 1.13356 62.0 1.13356 63.0 1.13356 64.0 1.13356 65.0 1.13356 66.0 1.13356 67.0 1.13356 68.0 1.13356 69.0 1.13356 70.0 1.13356 71.0 1.13356 72.0 1.13356 73.0 1.13356 74.0 1.13356 75.0 1.13356 76.0 1.13356 77.0 1.13356 78.0 1.13356 79.0 1.13356 80.0 1.13356 81.0 1.13356 82.0 1.13356 83.0 1.13356 84.0 1.13356 85.0 1.13356 86.0 1.13356 87.0 1.13356 88.0 1.13356 89.0 1.13356 90.0 1.13356 91.0 1.13356 92.0 1.13356 93.0 1.13356 94.0 1.13356 95.0 1.13356 96.0 1.13356 97.0 1.13356 98.0 1.13356 99.0 1.13356 100.0 1.13356