[2021-06-07 23:44:10] root: INFO: Resolving repeat 1: [6725]
[2021-06-07 23:44:10] root: DEBUG: Orientation: forward
[2021-06-07 23:44:10] root: DEBUG: Polishing templates
[2021-06-07 23:44:30] root: DEBUG: Estimating divergence
[2021-06-07 23:44:30] root: DEBUG: Finding tentative divergence positions
[2021-06-07 23:44:31] root: DEBUG: Total positions: 4386
[2021-06-07 23:44:31] root: DEBUG: Alignment error rate: 0.216368726495
[2021-06-07 23:44:31] root: DEBUG: Checking initial set of edge reads
[2021-06-07 23:44:32] root: DEBUG: Side in, edge 1656, non-overlap reads = 0
[2021-06-07 23:44:32] root: DEBUG: Side in, edge -7927, non-overlap reads = 1
[2021-06-07 23:44:33] root: DEBUG: Side out, edge 4272, non-overlap reads = 3
[2021-06-07 23:44:33] root: DEBUG: Side out, edge -2897, non-overlap reads = 7
[2021-06-07 23:44:33] root: DEBUG: Iterative procedure
[2021-06-07 23:44:33] root: DEBUG: Iteration 1, 'out'
[2021-06-07 23:44:33] root: DEBUG: 	Polishing 'out -2897' reads
[2021-06-07 23:44:38] root: DEBUG: 	Polishing 'out 4272' reads
[2021-06-07 23:44:42] root: DEBUG: 	Partitioning 'out' reads
[2021-06-07 23:44:42] root: DEBUG: Iteration 2, 'out'
[2021-06-07 23:44:43] root: DEBUG: 	Polishing 'out -2897' reads
[2021-06-07 23:44:48] root: DEBUG: 	Polishing 'out 4272' reads
[2021-06-07 23:44:53] root: DEBUG: 	Partitioning 'out' reads
[2021-06-07 23:44:54] root: DEBUG: Iteration 3, 'out'
[2021-06-07 23:44:54] root: DEBUG: 	Polishing 'out -2897' reads
[2021-06-07 23:44:59] root: DEBUG: 	Polishing 'out 4272' reads
[2021-06-07 23:45:03] root: DEBUG: 	Partitioning 'out' reads
[2021-06-07 23:45:04] root: DEBUG: Iteration 4, 'out'
[2021-06-07 23:45:04] root: DEBUG: 	Polishing 'out -2897' reads
[2021-06-07 23:45:09] root: DEBUG: 	Polishing 'out 4272' reads
[2021-06-07 23:45:13] root: DEBUG: 	Partitioning 'out' reads
[2021-06-07 23:45:14] root: DEBUG: Iteration 5, 'out'
[2021-06-07 23:45:14] root: DEBUG: 	Polishing 'out -2897' reads
[2021-06-07 23:45:19] root: DEBUG: 	Polishing 'out 4272' reads
[2021-06-07 23:45:24] root: DEBUG: 	Partitioning 'out' reads
[2021-06-07 23:45:25] root: DEBUG: Iteration 6, 'out'
[2021-06-07 23:45:25] root: DEBUG: 	Polishing 'out -2897' reads
[2021-06-07 23:45:29] root: DEBUG: 	Polishing 'out 4272' reads
[2021-06-07 23:45:33] root: DEBUG: 	Partitioning 'out' reads
[2021-06-07 23:45:34] root: DEBUG: Iteration 7, 'out'
[2021-06-07 23:45:34] root: DEBUG: 	Polishing 'out -2897' reads
[2021-06-07 23:45:37] root: DEBUG: 	Polishing 'out 4272' reads
[2021-06-07 23:45:45] root: DEBUG: 	Partitioning 'out' reads
[2021-06-07 23:45:46] root: DEBUG: Iteration 8, 'out'
[2021-06-07 23:45:46] root: DEBUG: 	Polishing 'out -2897' reads
[2021-06-07 23:45:49] root: DEBUG: 	Polishing 'out 4272' reads
[2021-06-07 23:45:53] root: DEBUG: 	Partitioning 'out' reads
[2021-06-07 23:45:54] root: DEBUG: Iteration 9, 'out'
[2021-06-07 23:45:54] root: DEBUG: 	Polishing 'out -2897' reads
[2021-06-07 23:45:57] root: DEBUG: 	Polishing 'out 4272' reads
[2021-06-07 23:46:01] root: DEBUG: 	Partitioning 'out' reads
[2021-06-07 23:46:02] root: DEBUG: Iteration 10, 'out'
[2021-06-07 23:46:02] root: DEBUG: 	Polishing 'out -2897' reads
[2021-06-07 23:46:07] root: DEBUG: 	Polishing 'out 4272' reads
[2021-06-07 23:46:11] root: DEBUG: 	Partitioning 'out' reads
[2021-06-07 23:46:12] root: DEBUG: Writing stats files
[2021-06-07 23:46:12] root: DEBUG: Generating summary and resolved repeat file
[2021-06-07 23:46:13] root: INFO: Repeat not resolved