python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L1979-210117L05_GM16_SC-RAF-GAL_AB03.1x36mers.sacCer3.unique.bam SAMstats-L1979-210117L05_GM16_SC-RAF-GAL_AB03.1x36mers.sacCer3.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L1979-210117L05_GM16_SC-RAF-GAL_AB03.1x36mers.sacCer3.unique.nochrM.bam SAMstats-L1979-210117L05_GM16_SC-RAF-GAL_AB03.1x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L1979-210117L05_GM16_SC-RAF-GAL_AB03.2x36mers.sacCer3.unique.bam SAMstats-L1979-210117L05_GM16_SC-RAF-GAL_AB03.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L1980-210117L06_GM17_SC-RAF-GAL_AB03.1x36mers.sacCer3.unique.bam SAMstats-L1980-210117L06_GM17_SC-RAF-GAL_AB03.1x36mers.sacCer3.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L1980-210117L06_GM17_SC-RAF-GAL_AB03.1x36mers.sacCer3.unique.nochrM.bam SAMstats-L1980-210117L06_GM17_SC-RAF-GAL_AB03.1x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L1980-210117L06_GM17_SC-RAF-GAL_AB03.2x36mers.sacCer3.unique.bam SAMstats-L1980-210117L06_GM17_SC-RAF-GAL_AB03.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L1981-210117L07_GM18_SC-RAF-GAL_AB03.1x36mers.sacCer3.unique.bam SAMstats-L1981-210117L07_GM18_SC-RAF-GAL_AB03.1x36mers.sacCer3.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L1981-210117L07_GM18_SC-RAF-GAL_AB03.1x36mers.sacCer3.unique.nochrM.bam SAMstats-L1981-210117L07_GM18_SC-RAF-GAL_AB03.1x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L1981-210117L07_GM18_SC-RAF-GAL_AB03.2x36mers.sacCer3.unique.bam SAMstats-L1981-210117L07_GM18_SC-RAF-GAL_AB03.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L1982-210117L08_GM19_SC-RAF-GAL_AB03.1x36mers.sacCer3.unique.bam SAMstats-L1982-210117L08_GM19_SC-RAF-GAL_AB03.1x36mers.sacCer3.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L1982-210117L08_GM19_SC-RAF-GAL_AB03.1x36mers.sacCer3.unique.nochrM.bam SAMstats-L1982-210117L08_GM19_SC-RAF-GAL_AB03.1x36mers.sacCer3.unique.nochrM -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L1982-210117L08_GM19_SC-RAF-GAL_AB03.2x36mers.sacCer3.unique.bam SAMstats-L1982-210117L08_GM19_SC-RAF-GAL_AB03.2x36mers.sacCer3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired