python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only0 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only0.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only1 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only1.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only10 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only10.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only10.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only100 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only100.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only100.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only101 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only101.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only101.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only102 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only102.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only102.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only103 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only103.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only103.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only104 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only104.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only104.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only105 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only105.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only105.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only106 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only106.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only106.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only107 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only107.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only107.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only108 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only108.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only108.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only109 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only109.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only109.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only11 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only11.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only11.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only110 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only110.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only110.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only111 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only111.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only111.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only112 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only112.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only112.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only113 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only113.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only113.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only114 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only114.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only114.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only115 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only115.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only115.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only116 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only116.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only116.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only117 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only117.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only117.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only118 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only118.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only118.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only119 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only119.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only119.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only12 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only12.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only12.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only120 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only120.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only120.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only121 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only121.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only121.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only122 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only122.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only122.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only123 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only123.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only123.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only124 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only124.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only124.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only125 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only125.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only125.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only126 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only126.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only126.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only127 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only127.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only127.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only128 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only128.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only128.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only129 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only129.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only129.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only13 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only13.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only13.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only130 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only130.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only130.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only131 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only131.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only131.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only132 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only132.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only132.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only133 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only133.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only133.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only134 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only134.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only134.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only135 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only135.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only135.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only136 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only136.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only136.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only137 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only137.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only137.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only138 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only138.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only138.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only139 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only139.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only139.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only14 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only14.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only14.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only140 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only140.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only140.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only141 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only141.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only141.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only142 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only142.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only142.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only143 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only143.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only143.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only144 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only144.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only144.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only145 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only145.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only145.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only146 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only146.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only146.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only147 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only147.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only147.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only148 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only148.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only148.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only149 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only149.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only149.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only15 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only15.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only15.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only150 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only150.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only150.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only151 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only151.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only151.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only152 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only152.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only152.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only153 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only153.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only153.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only154 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only154.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only154.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only155 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only155.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only155.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only156 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only156.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only156.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only157 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only157.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only157.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only158 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only158.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only158.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only159 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only159.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only159.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only16 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only16.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only16.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only160 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only160.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only160.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only161 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only161.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only161.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only162 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only162.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only162.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only163 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only163.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only163.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only164 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only164.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only164.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only165 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only165.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only165.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only166 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only166.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only166.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only167 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only167.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only167.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only168 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only168.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only168.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only169 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only169.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only169.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only17 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only17.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only17.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only170 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only170.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only170.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only171 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only171.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only171.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only172 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only172.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only172.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only173 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only173.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only173.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only174 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only174.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only174.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only175 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only175.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only175.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only176 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only176.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only176.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only177 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only177.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only177.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only178 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only178.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only178.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only179 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only179.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only179.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only18 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only18.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only18.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only180 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only180.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only180.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only181 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only181.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only181.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only182 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only182.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only182.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only183 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only183.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only183.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only184 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only184.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only184.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only185 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only185.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only185.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only186 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only186.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only186.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only187 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only187.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only187.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only188 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only188.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only188.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only189 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only189.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only189.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only19 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only19.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only19.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only190 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only190.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only190.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only191 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only191.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only191.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only192 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only192.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only192.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only193 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only193.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only193.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only194 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only194.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only194.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only195 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only195.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only195.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only196 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only196.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only196.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only197 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only197.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only197.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only198 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only198.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only198.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only199 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only199.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only199.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only2 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only2.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only2.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only20 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only20.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only20.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only200 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only200.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only200.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only201 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only201.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only201.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only202 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only202.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only202.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only203 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only203.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only203.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only204 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only204.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only204.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only205 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only205.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only205.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only206 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only206.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only206.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only207 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only207.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only207.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only208 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only208.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only208.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only209 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only209.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only209.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only21 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only21.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only21.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only210 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only210.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only210.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only211 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only211.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only211.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only212 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only212.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only212.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only213 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only213.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only213.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only214 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only214.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only214.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only215 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only215.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only215.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only216 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only216.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only216.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only217 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only217.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only217.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only218 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only218.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only218.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only219 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only219.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only219.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only22 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only22.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only22.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only220 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only220.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only220.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only221 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only221.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only221.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only222 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only222.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only222.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only223 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only223.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only223.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only224 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only224.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only224.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only225 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only225.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only225.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only226 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only226.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only226.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only227 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only227.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only227.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only228 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only228.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only228.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only229 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only229.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only229.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only23 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only23.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only23.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only230 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only230.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only230.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only231 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only231.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only231.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only232 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only232.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only232.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only233 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only233.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only233.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only234 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only234.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only234.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only235 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only235.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only235.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only236 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only236.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only236.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only237 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only237.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only237.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only238 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only238.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only238.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only239 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only239.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only239.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only24 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only24.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only24.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only240 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only240.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only240.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only241 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only241.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only241.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only242 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only242.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only242.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only243 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only243.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only243.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only244 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only244.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only244.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only245 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only245.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only245.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only246 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only246.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only246.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only247 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only247.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only247.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only248 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only248.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only248.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only249 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only249.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only249.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only25 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only25.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only25.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only250 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only250.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only250.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only251 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only251.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only251.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only252 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only252.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only252.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only253 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only253.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only253.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only254 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only254.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only254.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only255 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only255.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only255.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only256 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only256.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only256.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only257 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only257.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only257.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only26 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only26.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only26.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only27 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only27.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only27.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only28 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only28.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only28.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only29 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only29.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only29.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only3 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only3.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only3.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only30 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only30.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only30.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only31 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only31.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only31.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only32 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only32.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only32.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only33 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only33.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only33.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only34 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only34.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only34.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only35 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only35.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only35.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only36 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only36.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only36.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only37 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only37.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only37.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only38 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only38.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only38.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only39 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only39.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only39.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only4 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only4.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only4.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only40 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only40.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only40.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only41 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only41.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only41.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only42 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only42.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only42.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only43 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only43.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only43.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only44 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only44.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only44.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only45 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only45.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only45.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only46 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only46.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only46.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only47 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only47.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only47.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only48 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only48.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only48.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only49 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only49.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only49.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only5 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only5.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only5.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only50 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only50.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only50.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only51 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only51.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only51.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only52 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only52.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only52.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only53 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only53.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only53.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only54 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only54.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only54.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only55 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only55.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only55.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only56 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only56.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only56.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only57 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only57.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only57.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only58 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only58.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only58.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only59 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only59.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only59.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only6 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only6.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only6.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only60 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only60.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only60.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only61 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only61.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only61.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only62 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only62.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only62.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only63 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only63.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only63.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only64 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only64.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only64.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only65 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only65.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only65.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only66 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only66.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only66.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only67 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only67.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only67.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only68 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only68.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only68.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only69 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only69.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only69.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only7 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only7.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only7.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only70 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only70.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only70.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only71 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only71.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only71.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only72 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only72.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only72.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only73 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only73.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only73.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only74 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only74.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only74.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only75 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only75.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only75.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only76 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only76.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only76.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only77 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only77.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only77.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only78 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only78.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only78.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only79 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only79.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only79.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only8 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only8.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only8.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only80 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only80.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only80.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only81 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only81.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only81.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only82 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only82.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only82.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only83 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only83.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only83.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only84 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only84.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only84.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only85 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only85.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only85.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only86 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only86.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only86.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only87 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only87.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only87.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only88 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only88.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only88.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only89 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only89.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only89.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only9 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only9.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only9.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only90 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only90.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only90.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only91 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only91.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only91.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only92 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only92.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only92.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only93 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only93.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only93.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only94 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only94.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only94.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only95 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only95.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only95.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only96 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only96.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only96.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only97 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only97.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only97.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only98 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only98.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only98.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m5C-only99 0.5 pieces-TomboOutput_barcode04_Reb1.m5C-only99.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m5C-only99.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only0 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only0.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only1 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only1.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only10 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only10.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only10.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only100 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only100.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only100.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only101 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only101.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only101.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only102 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only102.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only102.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only103 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only103.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only103.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only104 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only104.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only104.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only105 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only105.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only105.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only106 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only106.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only106.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only107 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only107.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only107.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only108 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only108.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only108.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only109 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only109.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only109.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only11 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only11.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only11.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only110 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only110.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only110.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only111 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only111.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only111.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only112 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only112.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only112.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only113 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only113.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only113.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only114 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only114.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only114.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only115 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only115.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only115.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only116 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only116.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only116.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only117 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only117.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only117.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only118 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only118.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only118.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only119 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only119.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only119.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only12 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only12.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only12.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only120 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only120.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only120.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only121 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only121.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only121.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only122 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only122.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only122.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only123 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only123.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only123.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only124 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only124.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only124.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only125 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only125.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only125.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only126 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only126.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only126.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only127 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only127.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only127.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only128 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only128.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only128.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only129 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only129.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only129.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only13 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only13.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only13.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only130 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only130.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only130.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only131 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only131.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only131.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only132 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only132.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only132.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only133 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only133.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only133.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only134 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only134.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only134.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only135 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only135.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only135.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only136 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only136.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only136.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only137 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only137.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only137.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only138 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only138.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only138.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only139 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only139.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only139.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only14 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only14.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only14.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only140 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only140.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only140.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only141 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only141.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only141.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only142 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only142.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only142.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only143 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only143.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only143.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only144 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only144.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only144.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only145 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only145.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only145.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only146 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only146.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only146.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only147 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only147.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only147.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only148 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only148.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only148.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only149 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only149.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only149.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only15 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only15.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only15.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only150 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only150.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only150.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only151 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only151.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only151.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only152 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only152.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only152.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only153 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only153.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only153.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only154 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only154.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only154.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only155 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only155.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only155.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only156 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only156.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only156.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only157 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only157.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only157.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only158 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only158.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only158.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only159 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only159.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only159.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only16 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only16.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only16.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only160 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only160.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only160.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only161 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only161.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only161.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only162 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only162.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only162.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only163 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only163.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only163.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only164 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only164.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only164.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only165 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only165.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only165.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only166 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only166.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only166.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only167 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only167.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only167.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only168 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only168.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only168.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only169 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only169.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only169.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only17 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only17.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only17.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only170 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only170.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only170.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only171 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only171.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only171.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only172 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only172.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only172.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only173 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only173.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only173.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only174 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only174.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only174.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only175 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only175.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only175.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only176 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only176.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only176.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only177 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only177.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only177.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only178 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only178.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only178.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only179 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only179.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only179.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only18 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only18.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only18.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only180 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only180.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only180.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only181 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only181.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only181.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only182 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only182.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only182.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only183 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only183.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only183.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only184 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only184.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only184.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only185 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only185.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only185.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only186 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only186.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only186.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only187 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only187.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only187.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only188 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only188.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only188.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only189 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only189.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only189.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only19 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only19.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only19.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only190 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only190.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only190.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only191 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only191.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only191.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only192 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only192.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only192.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only193 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only193.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only193.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only194 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only194.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only194.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only195 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only195.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only195.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only196 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only196.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only196.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only197 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only197.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only197.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only198 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only198.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only198.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only199 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only199.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only199.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only2 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only2.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only2.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only20 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only20.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only20.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only200 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only200.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only200.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only201 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only201.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only201.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only202 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only202.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only202.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only203 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only203.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only203.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only204 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only204.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only204.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only205 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only205.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only205.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only206 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only206.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only206.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only207 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only207.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only207.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only208 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only208.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only208.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only209 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only209.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only209.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only21 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only21.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only21.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only210 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only210.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only210.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only211 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only211.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only211.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only212 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only212.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only212.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only213 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only213.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only213.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only214 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only214.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only214.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only215 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only215.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only215.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only216 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only216.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only216.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only217 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only217.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only217.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only218 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only218.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only218.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only219 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only219.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only219.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only22 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only22.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only22.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only220 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only220.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only220.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only221 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only221.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only221.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only222 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only222.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only222.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only223 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only223.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only223.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only224 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only224.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only224.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only225 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only225.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only225.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only226 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only226.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only226.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only227 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only227.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only227.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only228 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only228.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only228.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only229 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only229.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only229.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only23 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only23.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only23.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only230 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only230.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only230.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only231 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only231.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only231.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only232 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only232.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only232.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only233 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only233.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only233.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only234 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only234.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only234.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only235 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only235.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only235.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only236 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only236.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only236.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only237 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only237.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only237.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only238 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only238.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only238.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only239 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only239.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only239.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only24 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only24.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only24.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only240 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only240.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only240.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only241 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only241.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only241.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only242 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only242.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only242.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only243 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only243.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only243.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only244 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only244.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only244.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only245 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only245.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only245.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only246 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only246.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only246.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only247 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only247.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only247.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only248 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only248.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only248.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only249 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only249.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only249.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only25 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only25.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only25.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only250 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only250.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only250.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only251 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only251.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only251.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only252 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only252.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only252.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only253 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only253.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only253.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only254 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only254.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only254.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only255 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only255.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only255.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only256 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only256.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only256.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only257 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only257.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only257.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only26 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only26.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only26.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only27 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only27.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only27.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only28 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only28.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only28.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only29 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only29.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only29.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only3 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only3.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only3.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only30 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only30.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only30.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only31 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only31.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only31.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only32 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only32.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only32.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only33 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only33.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only33.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only34 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only34.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only34.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only35 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only35.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only35.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only36 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only36.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only36.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only37 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only37.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only37.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only38 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only38.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only38.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only39 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only39.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only39.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only4 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only4.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only4.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only40 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only40.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only40.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only41 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only41.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only41.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only42 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only42.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only42.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only43 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only43.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only43.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only44 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only44.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only44.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only45 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only45.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only45.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only46 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only46.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only46.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only47 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only47.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only47.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only48 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only48.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only48.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only49 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only49.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only49.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only5 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only5.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only5.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only50 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only50.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only50.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only51 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only51.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only51.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only52 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only52.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only52.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only53 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only53.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only53.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only54 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only54.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only54.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only55 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only55.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only55.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only56 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only56.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only56.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only57 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only57.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only57.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only58 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only58.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only58.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only59 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only59.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only59.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only6 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only6.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only6.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only60 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only60.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only60.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only61 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only61.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only61.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only62 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only62.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only62.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only63 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only63.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only63.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only64 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only64.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only64.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only65 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only65.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only65.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only66 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only66.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only66.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only67 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only67.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only67.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only68 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only68.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only68.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only69 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only69.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only69.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only7 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only7.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only7.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only70 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only70.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only70.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only71 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only71.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only71.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only72 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only72.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only72.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only73 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only73.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only73.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only74 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only74.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only74.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only75 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only75.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only75.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only76 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only76.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only76.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only77 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only77.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only77.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only78 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only78.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only78.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only79 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only79.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only79.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only8 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only8.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only8.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only80 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only80.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only80.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only81 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only81.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only81.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only82 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only82.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only82.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only83 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only83.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only83.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only84 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only84.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only84.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only85 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only85.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only85.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only86 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only86.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only86.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only87 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only87.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only87.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only88 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only88.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only88.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only89 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only89.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only89.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only9 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only9.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only9.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only90 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only90.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only90.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only91 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only91.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only91.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only92 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only92.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only92.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only93 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only93.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only93.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only94 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only94.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only94.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only95 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only95.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only95.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only96 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only96.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only96.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only97 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only97.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only97.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only98 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only98.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only98.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-TomboOutput_barcode04_Reb1.m6A-only99 0.5 pieces-TomboOutput_barcode04_Reb1.m6A-only99.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-TomboOutput_barcode04_Reb1.m6A-only99.BI_w10_a10_b10.reads.tsv