python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.0.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.0.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.0.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.100.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.100.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.100.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.101.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.101.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.101.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.102.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.102.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.102.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.103.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.103.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.103.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.104.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.104.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.104.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.105.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.105.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.105.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.106.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.106.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.106.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.107.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.107.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.107.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.108.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.108.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.108.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.109.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.109.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.109.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.10.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.10.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.10.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.110.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.110.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.110.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.111.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.111.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.111.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.112.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.112.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.112.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.113.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.113.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.113.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.114.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.114.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.114.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.115.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.115.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.115.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.116.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.116.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.116.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.117.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.117.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.117.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.118.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.118.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.118.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.119.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.119.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.119.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.11.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.11.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.11.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.120.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.120.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.120.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.121.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.121.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.121.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.122.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.122.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.122.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.123.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.123.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.123.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.124.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.124.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.124.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.125.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.125.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.125.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.126.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.126.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.126.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.127.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.127.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.127.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.128.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.128.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.128.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.12.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.12.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.12.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.130.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.130.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.130.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.131.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.131.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.131.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.132.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.132.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.132.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.133.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.133.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.133.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.134.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.134.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.134.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.135.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.135.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.135.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.136.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.136.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.136.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.137.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.137.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.137.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.138.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.138.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.138.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.139.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.139.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.139.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.13.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.13.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.13.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.140.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.140.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.140.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.141.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.141.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.141.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.142.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.142.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.142.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.143.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.143.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.143.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.144.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.144.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.144.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.145.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.145.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.145.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.146.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.146.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.146.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.147.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.147.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.147.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.148.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.148.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.148.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.149.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.149.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.149.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.14.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.14.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.14.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.150.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.150.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.150.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.151.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.151.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.151.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.152.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.152.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.152.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.153.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.153.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.153.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.154.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.154.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.154.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.155.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.155.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.155.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.156.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.156.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.156.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.157.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.157.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.157.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.158.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.158.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.158.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.159.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.159.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.159.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.15.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.15.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.15.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.160.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.160.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.160.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.161.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.161.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.161.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.162.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.162.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.162.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.163.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.163.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.163.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.164.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.164.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.164.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.165.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.165.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.165.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.166.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.166.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.166.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.167.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.167.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.167.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.168.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.168.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.168.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.169.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.169.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.169.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.16.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.16.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.16.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.170.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.170.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.170.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.171.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.171.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.171.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.172.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.172.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.172.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.173.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.173.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.173.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.174.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.174.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.174.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.175.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.175.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.175.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.176.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.176.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.176.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.177.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.177.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.177.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.178.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.178.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.178.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.179.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.179.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.179.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.17.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.17.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.17.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.180.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.180.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.180.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.18.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.18.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.18.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.19.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.19.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.19.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.1.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.1.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.1.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.20.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.20.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.20.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.21.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.21.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.21.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.22.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.22.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.22.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.23.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.23.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.23.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.24.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.24.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.24.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.25.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.25.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.25.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.26.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.26.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.26.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.27.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.27.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.27.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.28.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.28.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.28.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.29.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.29.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.29.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.2.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.2.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.2.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.30.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.30.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.30.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.31.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.31.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.31.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.32.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.32.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.32.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.33.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.33.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.33.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.35.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.35.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.35.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.36.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.36.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.36.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.37.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.37.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.37.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.38.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.38.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.38.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.39.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.39.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.39.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.3.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.3.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.3.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.40.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.40.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.40.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.41.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.41.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.41.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.42.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.42.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.42.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.43.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.43.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.43.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.44.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.44.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.44.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.45.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.45.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.45.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.46.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.46.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.46.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.47.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.47.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.47.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.48.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.48.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.48.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.49.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.49.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.49.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.4.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.4.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.4.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.50.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.50.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.50.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.51.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.51.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.51.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.52.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.52.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.52.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.53.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.53.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.53.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.54.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.54.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.54.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.55.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.55.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.55.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.56.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.56.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.56.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.57.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.57.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.57.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.58.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.58.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.58.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.59.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.59.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.59.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.5.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.5.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.5.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.60.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.60.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.60.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.61.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.61.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.61.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.62.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.62.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.62.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.63.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.63.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.63.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.64.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.64.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.64.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.65.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.65.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.65.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.66.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.66.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.66.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.67.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.67.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.67.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.68.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.68.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.68.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.69.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.69.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.69.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.6.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.6.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.6.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.70.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.70.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.70.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.71.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.71.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.71.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.72.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.72.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.72.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.73.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.73.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.73.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.74.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.74.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.74.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.75.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.75.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.75.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.76.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.76.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.76.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.77.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.77.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.77.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.78.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.78.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.78.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.79.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.79.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.79.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.7.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.7.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.7.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.80.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.80.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.80.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.81.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.81.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.81.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.82.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.82.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.82.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.83.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.83.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.83.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.84.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.84.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.84.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.85.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.85.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.85.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.86.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.86.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.86.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.87.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.87.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.87.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.88.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.88.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.88.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.89.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.89.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.89.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.8.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.8.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.8.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.90.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.90.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.90.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.91.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.91.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.91.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.92.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.92.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.92.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.93.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.93.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.93.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.94.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.94.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.94.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.95.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.95.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.95.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.96.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.96.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.96.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.97.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.97.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.97.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.98.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.98.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.98.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.99.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.99.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.99.tombo.m6A-only.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_09_27_Georgi_Tetrahymena.9.tombo.m6A-only.reads.tsv 0.5 pieces-2019_09_27_Georgi_Tetrahymena.9.tombo.m6A-only.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_09_27_Georgi_Tetrahymena.9.tombo.m6A-only.BI_w10_a10_b10.reads.tsv