python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G0 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G1 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G10 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G10.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G10.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G11 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G11.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G11.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G12 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G12.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G12.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G13 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G13.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G13.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G14 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G14.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G14.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G15 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G15.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G15.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G16 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G16.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G16.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G17 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G17.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G17.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G18 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G18.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G18.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G19 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G19.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G19.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G2 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G2.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G20 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G20.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G20.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G21 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G21.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G21.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G22 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G22.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G22.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G23 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G23.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G23.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G24 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G24.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G24.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G25 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G25.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G25.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G26 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G26.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G26.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G27 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G27.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G27.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G28 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G28.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G28.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G29 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G29.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G29.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G3 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G3.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G30 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G30.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G30.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G31 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G31.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G31.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G32 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G32.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G32.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G33 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G33.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G33.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G34 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G34.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G34.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G35 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G35.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G35.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G36 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G36.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G36.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G4 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G4.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G5 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G5.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G6 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G6.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G6.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G7 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G7.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G7.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G8 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G8.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G8.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G9 0.5 pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G9.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_07_19_Mouse_Cerevisiae-Sox2_125nM-mm10.generic-A-C-T-G9.BI_w10_a10_b10.reads.tsv