Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2019-04-06-Drosophila-Hi-C-data/05-BG3-Kc167-GSE122603/juicer-Kc167-pooled -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2019-04-06-Drosophila-Hi-C-data/05-BG3-Kc167-GSE122603/juicer-Kc167-pooled -p /oak/stanford/groups/akundaje/marinovg/genomes/dm3/dm3.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/dm3/bwa-indexes/dm3_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/dm3/bwa-indexes/dm3.fa                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  339,532,260
 Normal Paired: 262,232,105 (77.23%)
 Chimeric Paired: 47,027,374 (13.85%)
 Chimeric Ambiguous: 22,930,875 (6.75%)
 Unmapped: 7,341,906 (2.16%)
 Ligation Motif Present: 242,252,832 (71.35%)
Alignable (Normal+Chimeric Paired): 309,259,479 (91.08%)
Unique Reads: 228,211,383 (67.21%)
PCR Duplicates: 81,048,096 (23.87%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 481,673,561
Intra-fragment Reads: 17,236,824 (5.08% / 7.55%)
Below MAPQ Threshold: 77,508,434 (22.83% / 33.96%)
Hi-C Contacts: 133,466,125 (39.31% / 58.48%)
 Ligation Motif Present: 85,064,845  (25.05% / 37.27%)
 3' Bias (Long Range): 88% - 12%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 9,370,671  (2.76% / 4.11%)
Intra-chromosomal: 124,095,454  (36.55% / 54.38%)
Short Range (<20Kb): 57,235,960  (16.86% / 25.08%)
Long Range (>20Kb): 66,859,208  (19.69% / 29.30%)