Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2019-04-06-Drosophila-Hi-C-data/05-BG3-Kc167-GSE122603/juicer-BG3-pooled -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2019-04-06-Drosophila-Hi-C-data/05-BG3-Kc167-GSE122603/juicer-BG3-pooled -p /oak/stanford/groups/akundaje/marinovg/genomes/dm3/dm3.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/dm3/bwa-indexes/dm3_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/dm3/bwa-indexes/dm3.fa                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  298,592,720
 Normal Paired: 239,715,903 (80.28%)
 Chimeric Paired: 32,419,933 (10.86%)
 Chimeric Ambiguous: 13,360,377 (4.47%)
 Unmapped: 13,096,507 (4.39%)
 Ligation Motif Present: 173,363,818 (58.06%)
Alignable (Normal+Chimeric Paired): 272,135,836 (91.14%)
Unique Reads: 197,120,099 (66.02%)
PCR Duplicates: 75,015,737 (25.12%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 397,981,811
Intra-fragment Reads: 30,291,515 (10.14% / 15.37%)
Below MAPQ Threshold: 63,899,227 (21.40% / 32.42%)
Hi-C Contacts: 102,929,357 (34.47% / 52.22%)
 Ligation Motif Present: 64,514,015  (21.61% / 32.73%)
 3' Bias (Long Range): 80% - 20%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 14,507,415  (4.86% / 7.36%)
Intra-chromosomal: 88,421,942  (29.61% / 44.86%)
Short Range (<20Kb): 47,393,111  (15.87% / 24.04%)
Long Range (>20Kb): 41,027,936  (13.74% / 20.81%)