Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2019-04-06-Drosophila-Hi-C-data/05-BG3-Kc167-GSE122603/juicer-BG3-pooled -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2019-04-06-Drosophila-Hi-C-data/05-BG3-Kc167-GSE122603/juicer-BG3-pooled -p /oak/stanford/groups/akundaje/marinovg/genomes/dm3/dm3.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/dm3/bwa-indexes/dm3_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/dm3/bwa-indexes/dm3.fa                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  298,592,720
 Normal Paired: 239,715,903 (80.28%)
 Chimeric Paired: 32,419,933 (10.86%)
 Chimeric Ambiguous: 13,360,377 (4.47%)
 Unmapped: 13,096,507 (4.39%)
 Ligation Motif Present: 173,363,818 (58.06%)
Alignable (Normal+Chimeric Paired): 272,135,836 (91.14%)
Unique Reads: 197,120,099 (66.02%)
PCR Duplicates: 75,015,737 (25.12%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 397,981,811
Intra-fragment Reads: 30,291,515 (10.14% / 15.37%)
Below MAPQ Threshold: 60,469,478 (20.25% / 30.68%)
Hi-C Contacts: 106,359,106 (35.62% / 53.96%)
 Ligation Motif Present: 66,389,689  (22.23% / 33.68%)
 3' Bias (Long Range): 79% - 21%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 15,877,326  (5.32% / 8.05%)
Intra-chromosomal: 90,481,780  (30.30% / 45.90%)
Short Range (<20Kb): 48,462,183  (16.23% / 24.59%)
Long Range (>20Kb): 42,018,674  (14.07% / 21.32%)