Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2019-04-06-Drosophila-Hi-C-data/03-Kc167-GSE80702/juicer-DpnII_HiC-GSM2133771 -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2019-04-06-Drosophila-Hi-C-data/03-Kc167-GSE80702/juicer-DpnII_HiC-GSM2133771 -p /oak/stanford/groups/akundaje/marinovg/genomes/dm3//dm3.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/dm3/bwa-indexes/dm3_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/dm3/bwa-indexes/dm3.fa                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  315,782,004
 Normal Paired: 250,987,737 (79.48%)
 Chimeric Paired: 3,060 (0.00%)
 Chimeric Ambiguous: 6,323 (0.00%)
 Unmapped: 64,784,884 (20.52%)
 Ligation Motif Present: 183,757,433 (58.19%)
Alignable (Normal+Chimeric Paired): 250,990,797 (79.48%)
Unique Reads: 221,556,067 (70.16%)
PCR Duplicates: 29,434,730 (9.32%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 984,693,005
Intra-fragment Reads: 5,811,472 (1.84% / 2.62%)
Below MAPQ Threshold: 87,740,049 (27.79% / 39.60%)
Hi-C Contacts: 128,004,546 (40.54% / 57.78%)
 Ligation Motif Present: 59,954,522  (18.99% / 27.06%)
 3' Bias (Long Range): 85% - 15%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 10,542,424  (3.34% / 4.76%)
Intra-chromosomal: 117,462,122  (37.20% / 53.02%)
Short Range (<20Kb): 55,831,674  (17.68% / 25.20%)
Long Range (>20Kb): 61,628,444  (19.52% / 27.82%)