Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2019-04-06-Drosophila-Hi-C-data/03-Kc167-GSE80702/juicer-DpnII_HiC-GSM2133771 -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2019-04-06-Drosophila-Hi-C-data/03-Kc167-GSE80702/juicer-DpnII_HiC-GSM2133771 -p /oak/stanford/groups/akundaje/marinovg/genomes/dm3//dm3.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/dm3/bwa-indexes/dm3_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/dm3/bwa-indexes/dm3.fa                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  315,782,004
 Normal Paired: 250,987,737 (79.48%)
 Chimeric Paired: 3,060 (0.00%)
 Chimeric Ambiguous: 6,323 (0.00%)
 Unmapped: 64,784,884 (20.52%)
 Ligation Motif Present: 183,757,433 (58.19%)
Alignable (Normal+Chimeric Paired): 250,990,797 (79.48%)
Unique Reads: 221,556,067 (70.16%)
PCR Duplicates: 29,434,730 (9.32%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 984,693,005
Intra-fragment Reads: 5,811,472 (1.84% / 2.62%)
Below MAPQ Threshold: 83,794,080 (26.54% / 37.82%)
Hi-C Contacts: 131,950,515 (41.79% / 59.56%)
 Ligation Motif Present: 61,736,478  (19.55% / 27.86%)
 3' Bias (Long Range): 85% - 15%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 11,882,715  (3.76% / 5.36%)
Intra-chromosomal: 120,067,800  (38.02% / 54.19%)
Short Range (<20Kb): 57,017,014  (18.06% / 25.73%)
Long Range (>20Kb): 63,048,730  (19.97% / 28.46%)