Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2019-04-06-Drosophila-Hi-C-data/02-Kc167-GSE89112/juicer-Kc167-GSE85503 -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2019-04-06-Drosophila-Hi-C-data/02-Kc167-GSE89112/juicer-Kc167-GSE85503 -p /oak/stanford/groups/akundaje/marinovg/genomes/dm3//dm3.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/dm3//bwa-indexes/dm3_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/dm3//bwa-indexes/dm3.fa                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  1,079,403,284
 Normal Paired: 809,444,706 (74.99%)
 Chimeric Paired: 177,417,573 (16.44%)
 Chimeric Ambiguous: 73,625,129 (6.82%)
 Unmapped: 18,915,876 (1.75%)
 Ligation Motif Present: 507,019,819 (46.97%)
Alignable (Normal+Chimeric Paired): 986,862,279 (91.43%)
Unique Reads: 806,632,837 (74.73%)
PCR Duplicates: 180,229,442 (16.70%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 2,361,746,399
Intra-fragment Reads: 47,434,623 (4.39% / 5.88%)
Below MAPQ Threshold: 234,609,588 (21.74% / 29.09%)
Hi-C Contacts: 524,588,626 (48.60% / 65.03%)
 Ligation Motif Present: 188,667,557  (17.48% / 23.39%)
 3' Bias (Long Range): 70% - 30%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 28,700,391  (2.66% / 3.56%)
Intra-chromosomal: 495,888,235  (45.94% / 61.48%)
Short Range (<20Kb): 207,025,041  (19.18% / 25.67%)
Long Range (>20Kb): 288,853,796  (26.76% / 35.81%)