Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2019-04-06-Drosophila-Hi-C-data/01-Kc167-GSE85503/juicer-Kc167-GSE85503 -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2019-04-06-Drosophila-Hi-C-data/01-Kc167-GSE85503/juicer-Kc167-GSE85503 -p /oak/stanford/groups/akundaje/marinovg/genomes/dm3//dm3.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/dm3//bwa-indexes/dm3_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/dm3//bwa-indexes/dm3.fa                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  344,111,578
 Normal Paired: 154,131,466 (44.79%)
 Chimeric Paired: 7,533,986 (2.19%)
 Chimeric Ambiguous: 11,577,630 (3.36%)
 Unmapped: 170,868,496 (49.65%)
 Ligation Motif Present: 117,123 (0.03%)
Alignable (Normal+Chimeric Paired): 161,665,452 (46.98%)
Unique Reads: 143,366,878 (41.66%)
PCR Duplicates: 18,298,574 (5.32%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 659,174,819
Intra-fragment Reads: 35,219,926 (10.24% / 24.57%)
Below MAPQ Threshold: 50,267,343 (14.61% / 35.06%)
Hi-C Contacts: 57,879,609 (16.82% / 40.37%)
 Ligation Motif Present: 50,769  (0.01% / 0.04%)
 3' Bias (Long Range): 64% - 36%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 6,419,662  (1.87% / 4.48%)
Intra-chromosomal: 51,459,947  (14.95% / 35.89%)
Short Range (<20Kb): 22,176,830  (6.44% / 15.47%)
Long Range (>20Kb): 29,282,553  (8.51% / 20.42%)