python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only0 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only10 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only10.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only10.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only100 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only100.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only100.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1000 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1000.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1000.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1001 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1001.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1001.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1002 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1002.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1002.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1003 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1003.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1003.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1004 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1004.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1004.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1005 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1005.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1005.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1006 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1006.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1006.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1007 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1007.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1007.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1008 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1008.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1008.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1009 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1009.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1009.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only101 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only101.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only101.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1010 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1010.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1010.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1011 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1011.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1011.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1012 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1012.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1012.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1013 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1013.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1013.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1014 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1014.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1014.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1015 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1015.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1015.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1016 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1016.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1016.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1017 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1017.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1017.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1018 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1018.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1018.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1019 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1019.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1019.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only102 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only102.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only102.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1020 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1020.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1020.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1021 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1021.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1021.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1022 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1022.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1022.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1023 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1023.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1023.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1024 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1024.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1024.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1025 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1025.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1025.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1026 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1026.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1026.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1027 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1027.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1027.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1028 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1028.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1028.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1029 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1029.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1029.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only103 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only103.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only103.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1030 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1030.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1030.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1031 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1031.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1031.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1032 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1032.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1032.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1033 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1033.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1033.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1034 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1034.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1034.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1035 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1035.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1035.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1036 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1036.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1036.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1037 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1037.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1037.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1038 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1038.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1038.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1039 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1039.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1039.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only104 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only104.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only104.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1040 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1040.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1040.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1041 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1041.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1041.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1042 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1042.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1042.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1043 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1043.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1043.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1044 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1044.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1044.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1045 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1045.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1045.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1046 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1046.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1046.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1047 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1047.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1047.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1048 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1048.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1048.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1049 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1049.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1049.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only105 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only105.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only105.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1050 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1050.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1050.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1051 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1051.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1051.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1052 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1052.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1052.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1053 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1053.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1053.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1054 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1054.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1054.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1055 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1055.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1055.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1056 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1056.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1056.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1057 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1057.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1057.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1058 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1058.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1058.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1059 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1059.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1059.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only106 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only106.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only106.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1060 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1060.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1060.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1061 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1061.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1061.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1062 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1062.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1062.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1063 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1063.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1063.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1064 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1064.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1064.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1065 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1065.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1065.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1066 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1066.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1066.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1067 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1067.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1067.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1068 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1068.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1068.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1069 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1069.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1069.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only107 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only107.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only107.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1070 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1070.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1070.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1071 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1071.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1071.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1072 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1072.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1072.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1073 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1073.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1073.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1074 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1074.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1074.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1075 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1075.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1075.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1076 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1076.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1076.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1077 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1077.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1077.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1078 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1078.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1078.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1079 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1079.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1079.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only108 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only108.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only108.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1080 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1080.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1080.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1081 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1081.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1081.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1082 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1082.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1082.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1083 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1083.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1083.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1084 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1084.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1084.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1085 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1085.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1085.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1086 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1086.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1086.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1087 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1087.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1087.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1088 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1088.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1088.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1089 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1089.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1089.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only109 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only109.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only109.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1090 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1090.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1090.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1091 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1091.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1091.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1092 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1092.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1092.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1093 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1093.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1093.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1094 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1094.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1094.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1095 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1095.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1095.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1096 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1096.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1096.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1097 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1097.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1097.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1098 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1098.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1098.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1099 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1099.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1099.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only11 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only11.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only11.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only110 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only110.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only110.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1100 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1100.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1100.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1101 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1101.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1101.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1102 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1102.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1102.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1103 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1103.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1103.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1104 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1104.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1104.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1105 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1105.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1105.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1106 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1106.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1106.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1107 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1107.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1107.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1108 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1108.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1108.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1109 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1109.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1109.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only111 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only111.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only111.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1110 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1110.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1110.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1111 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1111.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1111.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1112 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1112.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1112.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1113 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1113.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1113.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1114 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1114.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1114.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1115 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1115.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1115.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1116 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1116.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1116.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1117 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1117.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1117.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1118 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1118.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1118.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1119 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1119.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1119.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only112 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only112.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only112.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1120 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1120.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1120.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1121 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1121.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1121.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1122 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1122.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1122.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1123 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1123.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1123.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1124 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1124.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1124.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1125 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1125.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1125.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1126 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1126.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1126.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1127 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1127.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1127.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1128 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1128.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1128.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1129 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1129.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1129.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only113 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only113.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only113.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1130 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1130.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1130.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1131 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1131.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1131.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1132 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1132.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1132.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1133 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1133.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1133.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1134 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1134.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1134.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1135 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1135.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1135.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1136 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1136.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1136.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1137 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1137.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1137.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1138 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1138.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1138.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1139 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1139.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1139.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only114 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only114.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only114.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1140 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1140.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1140.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1141 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1141.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1141.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1142 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1142.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1142.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1143 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1143.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1143.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1144 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1144.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1144.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1145 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1145.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1145.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1146 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1146.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1146.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1147 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1147.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1147.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1148 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1148.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1148.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1149 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1149.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1149.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only115 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only115.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only115.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1150 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1150.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1150.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1151 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1151.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1151.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1152 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1152.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1152.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1153 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1153.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1153.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1154 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1154.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1154.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1155 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1155.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1155.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1156 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1156.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1156.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1157 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1157.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1157.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1158 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1158.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1158.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1159 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1159.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1159.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only116 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only116.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only116.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1160 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1160.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1160.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1161 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1161.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1161.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1162 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1162.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1162.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1163 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1163.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1163.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1164 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1164.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1164.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1165 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1165.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1165.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1166 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1166.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1166.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1167 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1167.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1167.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1168 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1168.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1168.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1169 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1169.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1169.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only117 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only117.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only117.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1170 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1170.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1170.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1171 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1171.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1171.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1172 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1172.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1172.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1173 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1173.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1173.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1174 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1174.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1174.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1175 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1175.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1175.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1176 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1176.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1176.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1177 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1177.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1177.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1178 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1178.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1178.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1179 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1179.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1179.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only118 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only118.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only118.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1180 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1180.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1180.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1181 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1181.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1181.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1182 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1182.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1182.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1183 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1183.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1183.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1184 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1184.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1184.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1185 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1185.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1185.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1186 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1186.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1186.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1187 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1187.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1187.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1188 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1188.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1188.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1189 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1189.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1189.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only119 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only119.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only119.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1190 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1190.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1190.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1191 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1191.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1191.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1192 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1192.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1192.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1193 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1193.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1193.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1194 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1194.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1194.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1195 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1195.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1195.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1196 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1196.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1196.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1197 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1197.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1197.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1198 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1198.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1198.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1199 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1199.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1199.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only12 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only12.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only12.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only120 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only120.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only120.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1200 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1200.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1200.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1201 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1201.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1201.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1202 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1202.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1202.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1203 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1203.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1203.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1204 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1204.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1204.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1205 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1205.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1205.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1206 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1206.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1206.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1207 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1207.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1207.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1208 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1208.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1208.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1209 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1209.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1209.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only121 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only121.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only121.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1210 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1210.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1210.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1211 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1211.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1211.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1212 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1212.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1212.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1213 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1213.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1213.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1214 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1214.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1214.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1215 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1215.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1215.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1216 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1216.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1216.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1217 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1217.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1217.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1218 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1218.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1218.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1219 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1219.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1219.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only122 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only122.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only122.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1220 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1220.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1220.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1221 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1221.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1221.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1222 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1222.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1222.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1223 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1223.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1223.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1224 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1224.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1224.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1225 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1225.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1225.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1226 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1226.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1226.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1227 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1227.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1227.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1228 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1228.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1228.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1229 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1229.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1229.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only123 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only123.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only123.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1230 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1230.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1230.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1231 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1231.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1231.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1232 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1232.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1232.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1233 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1233.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1233.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1234 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1234.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1234.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1235 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1235.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1235.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1236 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1236.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1236.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1237 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1237.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1237.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1238 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1238.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1238.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1239 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1239.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1239.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only124 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only124.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only124.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1240 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1240.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1240.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1241 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1241.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1241.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1242 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1242.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1242.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1243 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1243.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1243.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1244 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1244.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1244.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1245 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1245.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1245.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1246 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1246.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1246.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1247 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1247.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1247.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1248 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1248.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1248.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1249 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1249.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1249.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only125 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only125.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only125.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1250 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1250.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1250.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1251 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1251.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1251.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1252 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1252.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1252.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1253 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1253.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1253.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1254 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1254.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1254.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1255 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1255.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1255.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1256 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1256.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1256.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1257 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1257.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1257.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1258 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1258.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1258.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1259 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1259.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1259.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only126 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only126.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only126.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1260 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1260.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1260.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1261 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1261.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1261.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1262 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1262.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1262.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1263 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1263.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1263.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1264 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1264.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1264.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1265 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1265.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1265.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1266 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1266.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1266.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1267 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1267.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1267.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1268 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1268.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1268.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1269 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1269.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1269.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only127 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only127.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only127.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1270 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1270.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1270.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1271 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1271.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1271.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1272 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1272.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1272.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1273 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1273.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1273.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1274 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1274.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1274.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1275 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1275.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1275.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1276 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1276.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1276.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1277 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1277.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1277.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1278 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1278.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1278.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1279 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1279.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1279.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only128 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only128.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only128.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1280 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1280.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1280.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1281 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1281.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1281.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1282 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1282.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1282.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1283 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1283.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1283.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1284 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1284.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1284.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1285 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1285.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1285.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1286 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1286.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1286.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1287 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1287.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1287.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1288 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1288.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1288.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1289 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1289.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1289.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only129 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only129.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only129.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1290 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1290.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1290.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1291 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1291.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1291.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1292 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1292.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1292.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1293 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1293.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1293.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1294 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1294.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1294.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1295 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1295.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1295.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1296 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1296.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1296.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1297 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1297.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1297.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1298 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1298.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1298.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1299 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1299.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1299.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only13 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only13.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only13.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only130 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only130.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only130.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1300 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1300.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1300.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1301 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1301.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1301.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1302 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1302.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1302.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1303 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1303.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1303.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1304 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1304.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1304.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1305 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1305.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1305.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1306 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1306.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1306.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1307 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1307.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1307.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1308 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1308.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1308.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1309 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1309.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1309.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only131 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only131.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only131.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1310 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1310.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1310.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1311 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1311.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1311.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1312 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1312.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1312.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1313 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1313.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1313.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1314 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1314.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1314.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1315 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1315.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1315.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1316 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1316.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1316.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1317 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1317.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1317.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1318 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1318.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1318.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1319 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1319.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1319.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only132 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only132.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only132.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1320 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1320.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1320.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1321 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1321.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1321.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1322 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1322.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1322.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1323 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1323.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1323.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1324 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1324.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1324.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1325 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1325.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1325.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1326 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1326.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1326.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1327 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1327.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1327.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1328 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1328.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1328.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1329 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1329.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1329.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only133 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only133.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only133.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1330 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1330.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1330.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1331 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1331.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1331.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1332 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1332.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1332.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1333 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1333.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1333.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1334 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1334.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1334.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1335 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1335.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1335.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1336 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1336.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1336.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1337 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1337.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1337.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1338 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1338.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1338.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1339 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1339.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1339.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only134 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only134.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only134.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1340 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1340.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1340.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1341 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1341.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1341.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1342 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1342.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1342.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1343 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1343.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1343.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1344 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1344.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1344.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1345 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1345.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1345.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1346 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1346.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1346.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1347 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1347.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1347.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1348 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1348.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1348.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1349 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1349.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1349.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only135 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only135.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only135.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1350 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1350.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1350.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1351 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1351.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1351.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1352 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1352.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1352.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1353 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1353.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1353.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1354 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1354.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1354.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1355 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1355.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1355.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1356 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1356.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1356.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1357 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1357.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1357.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1358 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1358.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1358.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1359 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1359.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1359.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only136 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only136.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only136.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1360 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1360.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1360.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1361 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1361.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1361.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1362 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1362.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1362.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1363 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1363.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1363.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1364 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1364.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1364.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1365 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1365.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1365.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1366 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1366.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1366.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1367 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1367.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1367.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1368 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1368.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1368.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1369 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1369.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1369.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only137 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only137.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only137.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1370 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1370.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1370.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1371 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1371.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1371.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1372 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1372.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1372.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1373 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1373.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1373.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1374 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1374.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1374.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1375 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1375.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1375.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1376 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1376.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1376.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1377 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1377.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1377.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1378 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1378.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1378.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1379 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1379.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1379.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only138 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only138.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only138.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1380 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1380.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1380.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1381 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1381.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1381.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1382 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1382.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1382.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1383 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1383.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1383.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1384 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1384.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1384.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1385 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1385.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1385.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1386 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1386.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1386.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1387 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1387.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1387.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1388 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1388.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1388.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1389 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1389.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1389.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only139 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only139.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only139.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1390 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1390.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1390.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1391 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1391.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1391.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1392 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1392.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1392.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1393 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1393.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1393.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1394 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1394.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1394.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1395 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1395.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1395.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1396 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1396.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1396.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1397 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1397.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1397.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1398 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1398.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1398.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1399 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1399.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1399.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only14 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only14.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only14.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only140 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only140.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only140.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1400 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1400.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1400.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1401 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1401.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1401.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1402 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1402.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1402.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1403 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1403.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1403.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1404 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1404.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1404.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1405 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1405.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1405.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1406 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1406.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1406.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1407 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1407.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1407.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1408 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1408.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1408.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1409 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1409.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1409.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only141 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only141.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only141.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1410 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1410.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1410.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1411 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1411.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1411.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1412 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1412.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1412.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1413 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1413.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1413.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1414 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1414.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1414.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1415 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1415.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1415.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1416 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1416.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1416.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1417 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1417.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1417.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1418 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1418.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1418.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1419 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1419.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1419.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only142 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only142.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only142.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1420 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1420.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1420.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1421 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1421.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1421.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1422 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1422.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1422.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1423 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1423.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1423.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1424 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1424.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1424.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1425 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1425.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1425.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1426 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1426.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1426.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1427 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1427.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1427.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1428 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1428.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1428.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1429 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1429.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1429.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only143 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only143.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only143.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1430 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1430.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1430.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1431 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1431.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1431.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1432 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1432.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1432.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1433 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1433.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1433.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1434 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1434.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1434.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1435 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1435.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1435.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1436 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1436.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1436.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1437 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1437.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1437.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1438 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1438.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1438.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1439 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1439.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1439.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only144 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only144.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only144.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1440 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1440.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1440.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1441 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1441.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1441.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1442 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1442.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1442.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1443 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1443.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1443.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1444 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1444.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1444.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1445 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1445.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1445.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1446 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1446.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1446.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1447 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1447.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1447.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1448 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1448.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1448.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1449 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1449.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1449.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only145 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only145.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only145.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1450 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1450.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1450.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1451 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1451.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1451.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1452 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1452.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1452.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1453 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1453.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1453.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1454 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1454.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1454.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1455 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1455.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1455.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1456 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1456.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1456.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1457 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1457.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1457.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1458 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1458.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1458.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1459 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1459.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1459.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only146 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only146.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only146.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1460 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1460.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1460.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1461 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1461.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1461.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1462 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1462.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1462.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1463 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1463.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1463.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1464 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1464.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1464.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1465 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1465.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1465.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1466 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1466.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1466.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1467 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1467.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1467.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1468 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1468.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1468.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1469 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1469.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1469.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only147 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only147.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only147.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1470 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1470.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1470.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1471 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1471.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1471.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1472 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1472.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1472.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1473 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1473.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1473.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1474 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1474.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1474.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1475 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1475.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1475.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1476 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1476.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1476.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1477 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1477.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1477.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1478 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1478.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1478.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1479 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1479.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1479.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only148 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only148.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only148.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1480 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1480.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1480.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1481 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1481.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1481.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1482 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1482.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1482.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1483 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1483.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1483.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1484 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1484.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1484.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1485 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1485.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1485.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1486 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1486.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1486.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1487 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1487.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1487.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1488 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1488.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1488.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1489 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1489.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1489.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only149 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only149.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only149.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1490 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1490.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1490.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1491 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1491.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1491.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1492 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1492.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1492.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1493 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1493.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1493.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1494 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1494.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1494.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1495 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1495.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1495.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1496 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1496.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1496.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1497 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1497.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1497.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1498 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1498.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1498.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1499 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1499.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1499.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only15 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only15.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only15.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only150 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only150.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only150.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1500 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1500.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1500.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1501 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1501.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1501.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1502 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1502.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1502.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1503 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1503.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1503.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1504 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1504.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1504.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1505 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1505.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1505.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1506 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1506.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1506.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1507 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1507.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1507.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1508 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1508.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1508.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1509 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1509.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1509.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only151 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only151.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only151.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1510 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1510.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1510.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1511 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1511.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1511.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1512 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1512.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1512.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1513 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1513.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1513.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1514 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1514.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1514.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1515 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1515.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1515.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1516 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1516.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1516.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1517 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1517.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1517.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1518 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1518.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1518.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1519 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1519.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1519.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only152 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only152.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only152.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1520 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1520.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1520.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1521 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1521.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1521.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1522 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1522.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1522.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1523 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1523.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1523.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1524 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1524.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1524.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1525 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1525.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1525.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1526 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1526.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1526.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1527 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1527.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1527.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1528 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1528.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1528.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1529 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1529.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1529.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only153 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only153.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only153.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1530 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1530.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1530.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1531 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1531.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1531.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1532 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1532.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1532.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1533 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1533.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1533.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1534 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1534.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1534.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1535 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1535.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1535.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1536 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1536.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1536.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1537 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1537.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1537.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1538 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1538.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1538.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1539 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1539.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1539.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only154 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only154.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only154.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1540 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1540.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1540.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1541 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1541.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1541.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1542 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1542.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1542.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1543 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1543.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1543.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1544 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1544.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1544.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1545 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1545.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1545.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1546 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1546.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1546.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1547 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1547.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1547.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1548 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1548.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1548.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1549 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1549.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1549.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only155 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only155.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only155.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1550 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1550.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1550.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1551 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1551.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1551.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1552 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1552.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1552.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1553 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1553.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1553.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1554 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1554.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1554.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1555 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1555.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1555.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1556 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1556.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1556.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1557 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1557.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1557.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1558 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1558.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1558.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1559 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1559.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1559.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only156 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only156.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only156.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1560 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1560.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1560.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1561 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1561.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1561.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1562 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1562.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1562.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1563 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1563.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1563.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1564 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1564.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1564.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1565 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1565.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1565.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1566 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1566.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1566.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1567 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1567.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1567.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1568 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1568.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1568.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1569 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1569.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1569.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only157 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only157.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only157.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1570 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1570.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1570.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1571 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1571.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1571.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1572 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1572.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1572.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1573 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1573.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1573.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1574 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1574.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1574.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1575 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1575.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1575.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1576 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1576.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1576.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1577 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1577.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1577.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1578 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1578.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1578.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1579 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1579.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1579.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only158 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only158.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only158.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1580 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1580.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1580.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1581 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1581.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1581.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1582 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1582.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1582.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1583 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1583.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1583.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1584 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1584.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1584.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1585 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1585.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1585.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1586 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1586.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1586.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1587 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1587.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1587.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1588 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1588.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1588.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1589 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1589.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1589.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only159 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only159.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only159.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1590 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1590.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1590.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1591 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1591.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1591.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1592 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1592.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1592.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1593 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1593.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1593.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1594 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1594.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1594.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1595 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1595.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1595.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1596 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1596.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1596.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1597 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1597.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1597.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1598 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1598.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1598.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1599 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1599.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1599.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only16 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only16.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only16.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only160 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only160.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only160.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1600 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1600.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1600.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1601 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1601.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1601.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1602 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1602.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1602.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1603 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1603.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1603.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1604 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1604.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1604.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1605 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1605.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1605.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1606 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1606.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1606.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1607 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1607.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1607.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1608 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1608.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1608.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1609 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1609.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1609.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only161 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only161.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only161.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1610 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1610.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1610.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1611 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1611.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1611.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1612 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1612.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1612.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1613 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1613.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1613.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1614 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1614.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1614.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1615 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1615.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1615.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1616 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1616.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1616.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1617 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1617.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1617.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1618 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1618.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1618.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1619 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1619.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1619.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only162 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only162.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only162.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1620 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1620.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1620.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1621 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1621.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1621.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1622 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1622.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1622.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1623 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1623.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1623.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1624 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1624.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1624.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1625 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1625.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1625.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1626 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1626.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1626.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1627 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1627.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1627.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1628 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1628.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1628.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1629 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1629.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1629.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only163 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only163.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only163.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1630 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1630.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1630.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1631 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1631.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1631.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1632 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1632.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1632.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1633 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1633.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1633.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1634 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1634.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1634.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1635 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1635.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1635.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1636 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1636.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1636.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1637 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1637.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1637.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1638 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1638.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1638.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1639 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1639.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1639.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only164 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only164.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only164.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1640 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1640.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1640.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1641 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1641.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1641.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1642 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1642.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1642.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1643 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1643.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1643.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1644 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1644.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1644.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1645 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1645.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1645.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1646 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1646.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1646.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1647 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1647.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1647.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1648 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1648.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1648.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1649 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1649.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1649.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only165 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only165.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only165.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1650 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1650.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1650.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1651 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1651.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1651.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1652 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1652.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1652.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1653 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1653.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1653.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1654 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1654.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1654.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1655 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1655.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1655.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1656 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1656.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1656.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1657 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1657.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1657.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1658 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1658.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1658.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1659 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1659.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1659.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only166 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only166.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only166.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1660 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1660.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1660.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1661 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1661.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1661.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1662 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1662.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1662.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1663 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1663.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1663.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1664 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1664.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1664.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1665 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1665.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1665.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1666 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1666.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1666.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1667 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1667.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1667.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1668 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1668.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1668.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1669 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1669.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1669.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only167 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only167.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only167.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1670 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1670.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1670.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1671 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1671.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1671.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1672 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1672.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1672.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1673 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1673.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1673.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1674 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1674.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1674.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1675 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1675.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1675.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1676 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1676.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1676.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1677 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1677.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1677.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1678 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1678.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1678.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1679 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1679.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1679.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only168 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only168.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only168.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1680 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1680.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1680.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1681 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1681.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1681.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1682 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1682.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1682.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1683 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1683.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1683.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1684 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1684.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1684.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1685 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1685.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1685.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1686 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1686.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1686.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1687 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1687.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1687.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1688 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1688.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1688.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1689 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1689.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1689.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only169 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only169.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only169.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1690 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1690.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1690.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1691 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1691.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1691.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1692 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1692.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1692.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1693 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1693.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1693.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1694 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1694.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1694.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1695 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1695.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1695.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1696 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1696.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1696.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1697 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1697.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1697.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1698 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1698.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1698.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1699 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1699.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1699.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only17 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only17.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only17.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only170 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only170.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only170.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1700 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1700.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1700.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1701 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1701.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1701.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1702 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1702.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1702.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1703 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1703.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1703.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1704 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1704.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1704.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1705 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1705.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1705.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1706 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1706.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1706.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1707 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1707.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1707.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1708 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1708.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1708.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1709 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1709.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1709.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only171 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only171.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only171.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1710 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1710.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1710.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1711 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1711.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1711.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1712 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1712.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1712.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1713 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1713.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1713.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1714 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1714.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1714.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1715 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1715.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1715.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1716 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1716.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1716.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1717 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1717.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1717.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1718 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1718.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1718.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1719 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1719.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1719.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only172 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only172.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only172.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1720 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1720.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1720.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1721 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1721.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1721.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1722 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1722.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1722.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1723 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1723.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1723.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1724 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1724.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1724.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1725 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1725.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1725.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1726 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1726.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1726.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1727 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1727.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1727.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1728 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1728.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1728.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1729 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1729.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1729.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only173 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only173.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only173.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1730 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1730.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1730.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1731 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1731.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1731.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1732 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1732.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1732.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1733 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1733.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1733.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1734 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1734.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1734.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1735 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1735.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1735.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1736 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1736.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1736.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1737 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1737.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1737.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1738 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1738.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1738.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1739 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1739.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1739.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only174 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only174.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only174.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1740 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1740.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1740.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1741 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1741.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1741.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1742 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1742.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1742.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1743 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1743.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1743.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1744 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1744.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1744.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1745 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1745.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1745.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1746 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1746.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1746.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1747 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1747.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1747.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1748 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1748.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1748.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1749 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1749.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1749.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only175 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only175.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only175.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1750 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1750.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1750.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1751 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1751.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1751.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1752 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1752.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1752.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1753 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1753.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1753.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1754 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1754.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1754.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1755 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1755.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1755.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1756 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1756.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1756.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1757 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1757.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1757.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1758 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1758.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1758.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1759 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1759.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1759.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only176 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only176.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only176.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1760 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1760.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1760.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1761 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1761.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1761.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1762 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1762.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1762.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1763 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1763.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1763.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1764 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1764.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1764.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1765 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1765.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1765.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1766 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1766.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1766.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1767 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1767.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1767.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1768 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1768.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1768.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1769 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1769.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1769.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only177 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only177.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only177.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1770 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1770.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1770.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1771 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1771.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1771.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1772 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1772.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1772.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1773 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1773.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1773.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1774 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1774.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1774.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1775 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1775.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1775.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1776 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1776.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1776.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1777 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1777.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1777.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1778 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1778.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1778.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1779 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1779.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1779.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only178 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only178.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only178.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1780 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1780.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1780.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1781 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1781.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1781.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1782 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1782.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1782.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1783 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1783.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1783.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1784 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1784.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1784.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1785 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1785.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1785.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1786 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1786.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1786.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1787 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1787.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1787.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1788 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1788.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1788.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1789 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1789.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1789.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only179 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only179.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only179.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1790 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1790.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1790.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1791 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1791.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1791.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1792 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1792.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1792.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1793 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1793.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1793.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1794 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1794.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1794.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1795 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1795.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1795.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1796 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1796.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1796.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1797 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1797.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1797.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1798 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1798.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1798.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1799 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1799.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1799.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only18 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only18.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only18.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only180 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only180.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only180.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1800 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1800.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1800.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1801 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1801.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1801.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1802 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1802.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1802.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1803 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1803.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1803.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1804 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1804.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1804.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1805 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1805.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1805.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1806 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1806.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1806.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1807 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1807.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1807.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1808 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1808.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1808.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1809 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1809.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1809.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only181 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only181.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only181.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1810 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1810.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1810.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1811 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1811.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1811.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1812 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1812.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1812.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1813 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1813.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1813.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1814 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1814.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1814.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1815 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1815.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1815.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1816 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1816.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1816.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1817 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1817.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1817.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1818 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1818.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1818.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1819 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1819.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1819.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only182 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only182.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only182.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1820 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1820.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1820.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1821 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1821.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1821.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1822 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1822.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1822.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1823 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1823.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1823.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1824 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1824.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1824.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1825 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1825.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1825.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1826 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1826.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1826.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1827 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1827.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1827.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1828 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1828.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1828.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1829 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1829.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1829.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only183 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only183.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only183.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1830 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1830.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1830.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1831 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1831.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1831.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1832 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1832.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1832.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1833 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1833.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1833.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1834 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1834.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1834.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1835 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1835.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1835.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1836 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1836.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1836.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1837 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1837.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1837.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1838 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1838.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1838.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1839 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1839.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1839.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only184 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only184.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only184.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1840 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1840.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1840.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1841 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1841.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1841.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1842 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1842.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1842.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1843 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1843.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1843.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1844 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1844.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1844.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1845 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1845.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1845.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1846 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1846.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1846.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1847 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1847.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1847.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1848 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1848.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1848.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1849 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1849.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1849.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only185 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only185.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only185.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1850 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1850.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1850.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1851 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1851.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1851.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1852 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1852.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1852.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1853 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1853.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1853.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1854 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1854.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1854.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1855 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1855.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1855.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1856 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1856.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1856.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1857 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1857.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1857.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1858 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1858.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1858.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1859 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1859.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1859.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only186 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only186.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only186.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1860 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1860.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1860.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1861 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1861.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1861.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1862 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1862.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1862.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1863 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1863.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1863.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1864 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1864.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1864.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1865 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1865.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1865.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1866 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1866.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1866.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1867 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1867.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1867.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1868 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1868.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1868.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1869 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1869.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1869.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only187 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only187.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only187.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1870 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1870.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1870.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1871 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1871.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1871.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1872 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1872.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1872.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1873 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1873.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1873.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1874 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1874.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1874.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1875 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1875.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1875.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1876 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1876.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1876.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1877 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1877.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1877.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1878 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1878.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1878.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1879 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1879.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1879.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only188 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only188.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only188.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1880 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1880.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1880.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1881 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1881.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1881.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1882 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1882.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1882.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1883 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1883.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1883.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1884 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1884.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1884.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1885 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1885.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1885.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1886 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1886.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1886.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1887 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1887.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1887.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1888 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1888.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1888.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1889 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1889.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1889.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only189 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only189.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only189.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1890 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1890.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1890.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1891 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1891.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1891.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1892 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1892.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1892.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1893 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1893.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1893.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1894 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1894.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1894.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1895 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1895.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1895.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1896 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1896.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1896.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1897 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1897.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1897.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1898 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1898.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1898.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1899 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1899.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1899.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only19 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only19.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only19.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only190 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only190.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only190.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1900 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1900.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1900.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1901 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1901.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1901.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1902 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1902.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1902.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1903 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1903.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1903.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1904 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1904.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1904.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1905 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1905.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1905.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1906 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1906.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1906.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1907 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1907.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1907.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1908 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1908.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1908.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1909 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1909.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1909.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only191 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only191.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only191.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1910 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1910.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1910.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1911 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1911.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1911.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1912 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1912.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1912.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1913 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1913.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1913.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1914 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1914.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1914.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1915 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1915.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1915.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1916 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1916.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1916.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1917 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1917.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1917.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1918 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1918.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1918.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1919 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1919.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1919.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only192 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only192.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only192.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1920 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1920.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1920.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1921 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1921.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1921.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1922 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1922.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1922.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1923 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1923.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1923.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1924 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1924.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1924.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1925 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1925.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1925.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1926 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1926.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1926.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1927 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1927.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1927.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1928 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1928.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1928.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1929 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1929.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1929.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only193 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only193.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only193.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1930 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1930.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1930.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1931 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1931.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1931.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1932 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1932.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1932.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1933 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1933.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1933.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1934 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1934.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1934.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1935 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1935.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1935.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1936 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1936.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1936.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1937 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1937.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1937.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1938 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1938.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1938.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1939 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1939.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1939.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only194 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only194.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only194.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1940 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1940.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1940.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1941 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1941.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1941.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1942 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1942.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1942.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1943 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1943.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1943.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1944 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1944.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1944.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1945 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1945.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1945.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1946 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1946.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1946.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1947 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1947.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1947.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1948 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1948.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1948.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1949 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1949.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1949.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only195 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only195.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only195.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1950 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1950.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1950.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1951 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1951.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1951.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1952 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1952.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1952.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1953 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1953.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1953.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1954 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1954.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1954.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1955 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1955.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1955.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1956 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1956.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1956.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1957 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1957.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1957.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1958 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1958.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1958.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1959 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1959.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1959.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only196 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only196.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only196.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1960 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1960.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1960.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1961 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1961.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1961.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1962 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1962.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1962.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1963 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1963.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1963.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1964 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1964.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1964.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1965 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1965.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1965.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1966 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1966.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1966.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1967 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1967.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1967.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1968 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1968.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1968.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1969 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1969.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1969.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only197 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only197.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only197.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1970 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1970.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1970.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1971 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1971.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1971.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1972 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1972.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1972.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1973 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1973.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1973.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1974 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1974.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1974.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1975 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1975.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1975.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1976 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1976.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1976.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1977 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1977.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1977.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1978 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1978.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1978.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1979 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1979.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1979.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only198 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only198.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only198.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1980 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1980.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1980.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1981 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1981.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1981.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1982 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1982.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1982.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1983 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1983.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1983.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1984 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1984.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1984.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1985 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1985.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1985.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1986 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1986.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1986.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1987 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1987.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1987.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1988 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1988.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1988.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1989 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1989.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1989.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only199 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only199.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only199.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1990 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1990.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1990.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1991 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1991.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1991.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1992 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1992.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1992.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1993 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1993.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1993.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1994 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1994.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1994.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1995 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1995.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1995.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1996 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1996.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1996.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1997 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1997.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1997.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1998 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1998.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1998.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1999 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1999.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only1999.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only20 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only20.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only20.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only200 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only200.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only200.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2000 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2000.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2000.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2001 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2001.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2001.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2002 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2002.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2002.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2003 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2003.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2003.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2004 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2004.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2004.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2005 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2005.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2005.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2006 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2006.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2006.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2007 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2007.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2007.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2008 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2008.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2008.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2009 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2009.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2009.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only201 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only201.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only201.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2010 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2010.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2010.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2011 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2011.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2011.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2012 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2012.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2012.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2013 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2013.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2013.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2014 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2014.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2014.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2015 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2015.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2015.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2016 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2016.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2016.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2017 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2017.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2017.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2018 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2018.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2018.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2019 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2019.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2019.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only202 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only202.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only202.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2020 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2020.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2020.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2021 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2021.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2021.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2022 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2022.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2022.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2023 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2023.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2023.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2024 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2024.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2024.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2025 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2025.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2025.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2026 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2026.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2026.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2027 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2027.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2027.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2028 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2028.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2028.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2029 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2029.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2029.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only203 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only203.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only203.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2030 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2030.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2030.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2031 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2031.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2031.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2032 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2032.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2032.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2033 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2033.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2033.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2034 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2034.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2034.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2035 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2035.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2035.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2036 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2036.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2036.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2037 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2037.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2037.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2038 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2038.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2038.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2039 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2039.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2039.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only204 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only204.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only204.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2040 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2040.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2040.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2041 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2041.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2041.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2042 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2042.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2042.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2043 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2043.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2043.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2044 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2044.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2044.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2045 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2045.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2045.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2046 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2046.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2046.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2047 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2047.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2047.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2048 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2048.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2048.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2049 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2049.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2049.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only205 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only205.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only205.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2050 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2050.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2050.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2051 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2051.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2051.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2052 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2052.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2052.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2053 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2053.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2053.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2054 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2054.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2054.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2055 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2055.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2055.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2056 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2056.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2056.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2057 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2057.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2057.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2058 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2058.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2058.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2059 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2059.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2059.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only206 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only206.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only206.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2060 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2060.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2060.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2061 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2061.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2061.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2062 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2062.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2062.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2063 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2063.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2063.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2064 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2064.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2064.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2065 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2065.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2065.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2066 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2066.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2066.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2067 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2067.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2067.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2068 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2068.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2068.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2069 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2069.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2069.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only207 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only207.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only207.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2070 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2070.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2070.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2071 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2071.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2071.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2072 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2072.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2072.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2073 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2073.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2073.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2074 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2074.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2074.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2075 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2075.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2075.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2076 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2076.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2076.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2077 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2077.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2077.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2078 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2078.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2078.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2079 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2079.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2079.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only208 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only208.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only208.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2080 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2080.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2080.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2081 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2081.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2081.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2082 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2082.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2082.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2083 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2083.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2083.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2084 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2084.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2084.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2085 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2085.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2085.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2086 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2086.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2086.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2087 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2087.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2087.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2088 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2088.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2088.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2089 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2089.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2089.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only209 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only209.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only209.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2090 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2090.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2090.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2091 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2091.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2091.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2092 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2092.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2092.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2093 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2093.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2093.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2094 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2094.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2094.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2095 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2095.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2095.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2096 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2096.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2096.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2097 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2097.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2097.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2098 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2098.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2098.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2099 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2099.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2099.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only21 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only21.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only21.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only210 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only210.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only210.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2100 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2100.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2100.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2101 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2101.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2101.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2102 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2102.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2102.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2103 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2103.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2103.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2104 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2104.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2104.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2105 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2105.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2105.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2106 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2106.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2106.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2107 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2107.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2107.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2108 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2108.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2108.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2109 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2109.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2109.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only211 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only211.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only211.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2110 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2110.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2110.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2111 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2111.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2111.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2112 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2112.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2112.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2113 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2113.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2113.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2114 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2114.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2114.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2115 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2115.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2115.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2116 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2116.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2116.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2117 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2117.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2117.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2118 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2118.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2118.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2119 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2119.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2119.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only212 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only212.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only212.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2120 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2120.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2120.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2121 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2121.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2121.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2122 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2122.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2122.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2123 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2123.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2123.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2124 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2124.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2124.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2125 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2125.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2125.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2126 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2126.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2126.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2127 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2127.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2127.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2128 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2128.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2128.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2129 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2129.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2129.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only213 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only213.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only213.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2130 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2130.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2130.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2131 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2131.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2131.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2132 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2132.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2132.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2133 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2133.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2133.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2134 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2134.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2134.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2135 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2135.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2135.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2136 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2136.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2136.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2137 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2137.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2137.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2138 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2138.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2138.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2139 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2139.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2139.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only214 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only214.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only214.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2140 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2140.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2140.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2141 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2141.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2141.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2142 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2142.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2142.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2143 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2143.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2143.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2144 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2144.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2144.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2145 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2145.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2145.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2146 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2146.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2146.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2147 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2147.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2147.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2148 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2148.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2148.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2149 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2149.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2149.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only215 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only215.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only215.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2150 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2150.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2150.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2151 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2151.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2151.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2152 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2152.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2152.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2153 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2153.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2153.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2154 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2154.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2154.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2155 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2155.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2155.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2156 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2156.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2156.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2157 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2157.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2157.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2158 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2158.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2158.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2159 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2159.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2159.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only216 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only216.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only216.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2160 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2160.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2160.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2161 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2161.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2161.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2162 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2162.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2162.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2163 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2163.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2163.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2164 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2164.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2164.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2165 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2165.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2165.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2166 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2166.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2166.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2167 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2167.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2167.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2168 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2168.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2168.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2169 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2169.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2169.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only217 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only217.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only217.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2170 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2170.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2170.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2171 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2171.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2171.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2172 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2172.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2172.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2173 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2173.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2173.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2174 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2174.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2174.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2175 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2175.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2175.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2176 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2176.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2176.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2177 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2177.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2177.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2178 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2178.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2178.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2179 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2179.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2179.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only218 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only218.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only218.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2180 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2180.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2180.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2181 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2181.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2181.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2182 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2182.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2182.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2183 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2183.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2183.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2184 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2184.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2184.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2185 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2185.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2185.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2186 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2186.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2186.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2187 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2187.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2187.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2188 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2188.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2188.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2189 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2189.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2189.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only219 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only219.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only219.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2190 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2190.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2190.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2191 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2191.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2191.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2192 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2192.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2192.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2193 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2193.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2193.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2194 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2194.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2194.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2195 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2195.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2195.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2196 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2196.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2196.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2197 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2197.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2197.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2198 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2198.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2198.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2199 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2199.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2199.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only22 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only22.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only22.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only220 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only220.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only220.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2200 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2200.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2200.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2201 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2201.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2201.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2202 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2202.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2202.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2203 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2203.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2203.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2204 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2204.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2204.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2205 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2205.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2205.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2206 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2206.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2206.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2207 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2207.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2207.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2208 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2208.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2208.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2209 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2209.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2209.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only221 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only221.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only221.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2210 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2210.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2210.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2211 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2211.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2211.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2212 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2212.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2212.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2213 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2213.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2213.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2214 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2214.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2214.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2215 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2215.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2215.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2216 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2216.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2216.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2217 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2217.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2217.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2218 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2218.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2218.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2219 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2219.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2219.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only222 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only222.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only222.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2220 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2220.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2220.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2221 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2221.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2221.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2222 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2222.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2222.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2223 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2223.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2223.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2224 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2224.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2224.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2225 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2225.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2225.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2226 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2226.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2226.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2227 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2227.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2227.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2228 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2228.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2228.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2229 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2229.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2229.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only223 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only223.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only223.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2230 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2230.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2230.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2231 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2231.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2231.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2232 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2232.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2232.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2233 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2233.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2233.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2234 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2234.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2234.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2235 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2235.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2235.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2236 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2236.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2236.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2237 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2237.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2237.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2238 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2238.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2238.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2239 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2239.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2239.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only224 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only224.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only224.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2240 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2240.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2240.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2241 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2241.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2241.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2242 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2242.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2242.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2243 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2243.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2243.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2244 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2244.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2244.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2245 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2245.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2245.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2246 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2246.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2246.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2247 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2247.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2247.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2248 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2248.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2248.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2249 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2249.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2249.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only225 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only225.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only225.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2250 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2250.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2250.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2251 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2251.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2251.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2252 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2252.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2252.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2253 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2253.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2253.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2254 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2254.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2254.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2255 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2255.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2255.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2256 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2256.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2256.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2257 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2257.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2257.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2258 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2258.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2258.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2259 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2259.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2259.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only226 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only226.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only226.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2260 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2260.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2260.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2261 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2261.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2261.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2262 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2262.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2262.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2263 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2263.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2263.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2264 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2264.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2264.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2265 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2265.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2265.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2266 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2266.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2266.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2267 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2267.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2267.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2268 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2268.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2268.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2269 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2269.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2269.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only227 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only227.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only227.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2270 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2270.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2270.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2271 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2271.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2271.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2272 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2272.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2272.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2273 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2273.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2273.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2274 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2274.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2274.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2275 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2275.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2275.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2276 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2276.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2276.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2277 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2277.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2277.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2278 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2278.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2278.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2279 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2279.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2279.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only228 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only228.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only228.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2280 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2280.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2280.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2281 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2281.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2281.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2282 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2282.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2282.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2283 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2283.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2283.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2284 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2284.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2284.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2285 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2285.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2285.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2286 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2286.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2286.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2287 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2287.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2287.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2288 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2288.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2288.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2289 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2289.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2289.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only229 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only229.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only229.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2290 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2290.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2290.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2291 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2291.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2291.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2292 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2292.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2292.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2293 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2293.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2293.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2294 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2294.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2294.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2295 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2295.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2295.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2296 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2296.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2296.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2297 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2297.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2297.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2298 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2298.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2298.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2299 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2299.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2299.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only23 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only23.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only23.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only230 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only230.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only230.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2300 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2300.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2300.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2301 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2301.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2301.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2302 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2302.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2302.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2303 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2303.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2303.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2304 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2304.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2304.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2305 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2305.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2305.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2306 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2306.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2306.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2307 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2307.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2307.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2308 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2308.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2308.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2309 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2309.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2309.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only231 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only231.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only231.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2310 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2310.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2310.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2311 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2311.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2311.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2312 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2312.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2312.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2313 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2313.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2313.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2314 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2314.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2314.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2315 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2315.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2315.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2316 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2316.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2316.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2317 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2317.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2317.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2318 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2318.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2318.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2319 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2319.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2319.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only232 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only232.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only232.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2320 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2320.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2320.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2321 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2321.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2321.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2322 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2322.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2322.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2323 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2323.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2323.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2324 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2324.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2324.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2325 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2325.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2325.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2326 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2326.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2326.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2327 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2327.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2327.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2328 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2328.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2328.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2329 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2329.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2329.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only233 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only233.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only233.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2330 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2330.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2330.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2331 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2331.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2331.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2332 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2332.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2332.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2333 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2333.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2333.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2334 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2334.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2334.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2335 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2335.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2335.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2336 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2336.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2336.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2337 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2337.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2337.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2338 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2338.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2338.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2339 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2339.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2339.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only234 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only234.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only234.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2340 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2340.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2340.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2341 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2341.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2341.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2342 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2342.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2342.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2343 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2343.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2343.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2344 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2344.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2344.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2345 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2345.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2345.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2346 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2346.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2346.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2347 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2347.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2347.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2348 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2348.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2348.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2349 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2349.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2349.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only235 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only235.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only235.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2350 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2350.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2350.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2351 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2351.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2351.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2352 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2352.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2352.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2353 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2353.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2353.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2354 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2354.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2354.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2355 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2355.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2355.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2356 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2356.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2356.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2357 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2357.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2357.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2358 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2358.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2358.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2359 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2359.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2359.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only236 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only236.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only236.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2360 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2360.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2360.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2361 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2361.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2361.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2362 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2362.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2362.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2363 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2363.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2363.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2364 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2364.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2364.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2365 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2365.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2365.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2366 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2366.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2366.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2367 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2367.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2367.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2368 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2368.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2368.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2369 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2369.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2369.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only237 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only237.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only237.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2370 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2370.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2370.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2371 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2371.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2371.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2372 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2372.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2372.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2373 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2373.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2373.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2374 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2374.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2374.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2375 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2375.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2375.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2376 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2376.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2376.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2377 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2377.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2377.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2378 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2378.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2378.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2379 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2379.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2379.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only238 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only238.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only238.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2380 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2380.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2380.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2381 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2381.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2381.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2382 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2382.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2382.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2383 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2383.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2383.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2384 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2384.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2384.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2385 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2385.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2385.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2386 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2386.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2386.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2387 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2387.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2387.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2388 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2388.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2388.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2389 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2389.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2389.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only239 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only239.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only239.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2390 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2390.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2390.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2391 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2391.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2391.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2392 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2392.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2392.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2393 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2393.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2393.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2394 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2394.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2394.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2395 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2395.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2395.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2396 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2396.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2396.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2397 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2397.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2397.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2398 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2398.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2398.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2399 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2399.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2399.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only24 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only24.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only24.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only240 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only240.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only240.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2400 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2400.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2400.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2401 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2401.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2401.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2402 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2402.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2402.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2403 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2403.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2403.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2404 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2404.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2404.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2405 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2405.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2405.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2406 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2406.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2406.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2407 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2407.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2407.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2408 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2408.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2408.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2409 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2409.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2409.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only241 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only241.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only241.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2410 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2410.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2410.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2411 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2411.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2411.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2412 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2412.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2412.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2413 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2413.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2413.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2414 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2414.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2414.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2415 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2415.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2415.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2416 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2416.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2416.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2417 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2417.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2417.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2418 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2418.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2418.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2419 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2419.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2419.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only242 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only242.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only242.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2420 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2420.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2420.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2421 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2421.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2421.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2422 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2422.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2422.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2423 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2423.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2423.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2424 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2424.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2424.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2425 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2425.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2425.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2426 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2426.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2426.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2427 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2427.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2427.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2428 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2428.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2428.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2429 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2429.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2429.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only243 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only243.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only243.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2430 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2430.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2430.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2431 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2431.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2431.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2432 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2432.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2432.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2433 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2433.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2433.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2434 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2434.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2434.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2435 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2435.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2435.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2436 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2436.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2436.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2437 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2437.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2437.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2438 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2438.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2438.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2439 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2439.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2439.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only244 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only244.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only244.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2440 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2440.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2440.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2441 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2441.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2441.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2442 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2442.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2442.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2443 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2443.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2443.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2444 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2444.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2444.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2445 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2445.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2445.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2446 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2446.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2446.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2447 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2447.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2447.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2448 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2448.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2448.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2449 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2449.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2449.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only245 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only245.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only245.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2450 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2450.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2450.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2451 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2451.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2451.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2452 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2452.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2452.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2453 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2453.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2453.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2454 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2454.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2454.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2455 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2455.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2455.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2456 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2456.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2456.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2457 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2457.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2457.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2458 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2458.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2458.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2459 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2459.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2459.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only246 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only246.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only246.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2460 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2460.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2460.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2461 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2461.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2461.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2462 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2462.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2462.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2463 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2463.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2463.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2464 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2464.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2464.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2465 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2465.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2465.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2466 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2466.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2466.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2467 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2467.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2467.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2468 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2468.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2468.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2469 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2469.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2469.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only247 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only247.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only247.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2470 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2470.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2470.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2471 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2471.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2471.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2472 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2472.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2472.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2473 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2473.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2473.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2474 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2474.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2474.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2475 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2475.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2475.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2476 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2476.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2476.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2477 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2477.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2477.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2478 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2478.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2478.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2479 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2479.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2479.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only248 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only248.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only248.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2480 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2480.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2480.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2481 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2481.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2481.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2482 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2482.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2482.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2483 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2483.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2483.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2484 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2484.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2484.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2485 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2485.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2485.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2486 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2486.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2486.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2487 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2487.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2487.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2488 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2488.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2488.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2489 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2489.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2489.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only249 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only249.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only249.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2490 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2490.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2490.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2491 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2491.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2491.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2492 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2492.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2492.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2493 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2493.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2493.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2494 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2494.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2494.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2495 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2495.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2495.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2496 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2496.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2496.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2497 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2497.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2497.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2498 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2498.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2498.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2499 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2499.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2499.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only25 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only25.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only25.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only250 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only250.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only250.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2500 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2500.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2500.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2501 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2501.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2501.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2502 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2502.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2502.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2503 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2503.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2503.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2504 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2504.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2504.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2505 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2505.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2505.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2506 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2506.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2506.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2507 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2507.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2507.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2508 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2508.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2508.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2509 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2509.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2509.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only251 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only251.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only251.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2510 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2510.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2510.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2511 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2511.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2511.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2512 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2512.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2512.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2513 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2513.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2513.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2514 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2514.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2514.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2515 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2515.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2515.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2516 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2516.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2516.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2517 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2517.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2517.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2518 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2518.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2518.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2519 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2519.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2519.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only252 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only252.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only252.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2520 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2520.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2520.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2521 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2521.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2521.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2522 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2522.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2522.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2523 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2523.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2523.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2524 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2524.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2524.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2525 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2525.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2525.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2526 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2526.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2526.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2527 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2527.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2527.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2528 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2528.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2528.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2529 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2529.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2529.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only253 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only253.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only253.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2530 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2530.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2530.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2531 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2531.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2531.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2532 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2532.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2532.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2533 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2533.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2533.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2534 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2534.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2534.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2535 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2535.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2535.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2536 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2536.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2536.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2537 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2537.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2537.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2538 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2538.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2538.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2539 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2539.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2539.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only254 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only254.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only254.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2540 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2540.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2540.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2541 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2541.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2541.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2542 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2542.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2542.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2543 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2543.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2543.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2544 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2544.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2544.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2545 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2545.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2545.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2546 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2546.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2546.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2547 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2547.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2547.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2548 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2548.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2548.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2549 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2549.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2549.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only255 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only255.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only255.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2550 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2550.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2550.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2551 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2551.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2551.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2552 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2552.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2552.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2553 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2553.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2553.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2554 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2554.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2554.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2555 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2555.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2555.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2556 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2556.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2556.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2557 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2557.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2557.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2558 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2558.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2558.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2559 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2559.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2559.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only256 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only256.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only256.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2560 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2560.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2560.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2561 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2561.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2561.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2562 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2562.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2562.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2563 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2563.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2563.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2564 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2564.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2564.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2565 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2565.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2565.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2566 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2566.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2566.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2567 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2567.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2567.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2568 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2568.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2568.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2569 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2569.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2569.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only257 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only257.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only257.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2570 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2570.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2570.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2571 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2571.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2571.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2572 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2572.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2572.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2573 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2573.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2573.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2574 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2574.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2574.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2575 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2575.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2575.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2576 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2576.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2576.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2577 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2577.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2577.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2578 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2578.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2578.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2579 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2579.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2579.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only258 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only258.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only258.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2580 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2580.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2580.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2581 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2581.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2581.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2582 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2582.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2582.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2583 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2583.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2583.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2584 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2584.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2584.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2585 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2585.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2585.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2586 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2586.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2586.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2587 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2587.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2587.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2588 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2588.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2588.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2589 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2589.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2589.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only259 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only259.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only259.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2590 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2590.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2590.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2591 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2591.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2591.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2592 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2592.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2592.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2593 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2593.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2593.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2594 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2594.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2594.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2595 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2595.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2595.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2596 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2596.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2596.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2597 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2597.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2597.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2598 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2598.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2598.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2599 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2599.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2599.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only26 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only26.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only26.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only260 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only260.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only260.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2600 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2600.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2600.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2601 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2601.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2601.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2602 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2602.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2602.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2603 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2603.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2603.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2604 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2604.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2604.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2605 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2605.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2605.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2606 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2606.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2606.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2607 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2607.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2607.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2608 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2608.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2608.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2609 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2609.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2609.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only261 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only261.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only261.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2610 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2610.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2610.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2611 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2611.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2611.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2612 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2612.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2612.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2613 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2613.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2613.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2614 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2614.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2614.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2615 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2615.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2615.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2616 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2616.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2616.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2617 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2617.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2617.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2618 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2618.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2618.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2619 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2619.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2619.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only262 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only262.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only262.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2620 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2620.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2620.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2621 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2621.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2621.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2622 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2622.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2622.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2623 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2623.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2623.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2624 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2624.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2624.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2625 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2625.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2625.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2626 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2626.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2626.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2627 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2627.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2627.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2628 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2628.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2628.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2629 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2629.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2629.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only263 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only263.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only263.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2630 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2630.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2630.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2631 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2631.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2631.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2632 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2632.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2632.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2633 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2633.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2633.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2634 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2634.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2634.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2635 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2635.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2635.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2636 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2636.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2636.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2637 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2637.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2637.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2638 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2638.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2638.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2639 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2639.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2639.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only264 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only264.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only264.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2640 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2640.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2640.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2641 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2641.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2641.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2642 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2642.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2642.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2643 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2643.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2643.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2644 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2644.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2644.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2645 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2645.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2645.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2646 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2646.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2646.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2647 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2647.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2647.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2648 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2648.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2648.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2649 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2649.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2649.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only265 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only265.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only265.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2650 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2650.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2650.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2651 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2651.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2651.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2652 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2652.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2652.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2653 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2653.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2653.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2654 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2654.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2654.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2655 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2655.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2655.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2656 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2656.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2656.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2657 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2657.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2657.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2658 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2658.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2658.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2659 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2659.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2659.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only266 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only266.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only266.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2660 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2660.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2660.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2661 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2661.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2661.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2662 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2662.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2662.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2663 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2663.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2663.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2664 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2664.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2664.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2665 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2665.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2665.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2666 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2666.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2666.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2667 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2667.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2667.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2668 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2668.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2668.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2669 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2669.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2669.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only267 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only267.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only267.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2670 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2670.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2670.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2671 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2671.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2671.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2672 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2672.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2672.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2673 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2673.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2673.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2674 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2674.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2674.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2675 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2675.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2675.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2676 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2676.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2676.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2677 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2677.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2677.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2678 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2678.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2678.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2679 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2679.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2679.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only268 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only268.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only268.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2680 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2680.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2680.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2681 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2681.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2681.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2682 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2682.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2682.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2683 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2683.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2683.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2684 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2684.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2684.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2685 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2685.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2685.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2686 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2686.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2686.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2687 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2687.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2687.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2688 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2688.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2688.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2689 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2689.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2689.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only269 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only269.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only269.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2690 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2690.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2690.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2691 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2691.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2691.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2692 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2692.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2692.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2693 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2693.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2693.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2694 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2694.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2694.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2695 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2695.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2695.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2696 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2696.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2696.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2697 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2697.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2697.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2698 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2698.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2698.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2699 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2699.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2699.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only27 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only27.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only27.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only270 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only270.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only270.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2700 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2700.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2700.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2701 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2701.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2701.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2702 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2702.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2702.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2703 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2703.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2703.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2704 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2704.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2704.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2705 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2705.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2705.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2706 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2706.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2706.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2707 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2707.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2707.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2708 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2708.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2708.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2709 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2709.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2709.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only271 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only271.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only271.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2710 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2710.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2710.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2711 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2711.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2711.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2712 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2712.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2712.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2713 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2713.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2713.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2714 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2714.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2714.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2715 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2715.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2715.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2716 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2716.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2716.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2717 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2717.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2717.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2718 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2718.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2718.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2719 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2719.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2719.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only272 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only272.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only272.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2720 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2720.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2720.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2721 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2721.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2721.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2722 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2722.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2722.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2723 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2723.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2723.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2724 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2724.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2724.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2725 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2725.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2725.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2726 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2726.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2726.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2727 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2727.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2727.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2728 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2728.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2728.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2729 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2729.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2729.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only273 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only273.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only273.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2730 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2730.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2730.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2731 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2731.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2731.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2732 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2732.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2732.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2733 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2733.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2733.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2734 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2734.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2734.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2735 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2735.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2735.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2736 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2736.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2736.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2737 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2737.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2737.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2738 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2738.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2738.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2739 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2739.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2739.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only274 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only274.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only274.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2740 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2740.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2740.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2741 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2741.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2741.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2742 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2742.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2742.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2743 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2743.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2743.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2744 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2744.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2744.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2745 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2745.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2745.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2746 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2746.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2746.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2747 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2747.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2747.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2748 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2748.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2748.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2749 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2749.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2749.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only275 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only275.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only275.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2750 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2750.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2750.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2751 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2751.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2751.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2752 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2752.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2752.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2753 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2753.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2753.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2754 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2754.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2754.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2755 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2755.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2755.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2756 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2756.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2756.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2757 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2757.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2757.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2758 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2758.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2758.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2759 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2759.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2759.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only276 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only276.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only276.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2760 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2760.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2760.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2761 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2761.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2761.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2762 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2762.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2762.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2763 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2763.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2763.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2764 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2764.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2764.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2765 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2765.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2765.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2766 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2766.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2766.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2767 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2767.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2767.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2768 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2768.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2768.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2769 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2769.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2769.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only277 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only277.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only277.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2770 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2770.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2770.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2771 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2771.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2771.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2772 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2772.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2772.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2773 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2773.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2773.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2774 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2774.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2774.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2775 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2775.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2775.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2776 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2776.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2776.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2777 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2777.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2777.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2778 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2778.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2778.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2779 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2779.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2779.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only278 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only278.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only278.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2780 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2780.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2780.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2781 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2781.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2781.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2782 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2782.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2782.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2783 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2783.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2783.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2784 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2784.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2784.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2785 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2785.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2785.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2786 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2786.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2786.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2787 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2787.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2787.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2788 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2788.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2788.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2789 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2789.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2789.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only279 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only279.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only279.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2790 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2790.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2790.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2791 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2791.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2791.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2792 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2792.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2792.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2793 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2793.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2793.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2794 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2794.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2794.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2795 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2795.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2795.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2796 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2796.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2796.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2797 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2797.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2797.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2798 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2798.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2798.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2799 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2799.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2799.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only28 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only28.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only28.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only280 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only280.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only280.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2800 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2800.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2800.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2801 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2801.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2801.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2802 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2802.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2802.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2803 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2803.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2803.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2804 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2804.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2804.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2805 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2805.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2805.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2806 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2806.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2806.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2807 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2807.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2807.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2808 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2808.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2808.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2809 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2809.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2809.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only281 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only281.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only281.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2810 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2810.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2810.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2811 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2811.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2811.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2812 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2812.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2812.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2813 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2813.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2813.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2814 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2814.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2814.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2815 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2815.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2815.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2816 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2816.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2816.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2817 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2817.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2817.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2818 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2818.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2818.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2819 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2819.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2819.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only282 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only282.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only282.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2820 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2820.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2820.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2821 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2821.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2821.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2822 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2822.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2822.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2823 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2823.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2823.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2824 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2824.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2824.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2825 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2825.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2825.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2826 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2826.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2826.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2827 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2827.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2827.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2828 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2828.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2828.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2829 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2829.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2829.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only283 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only283.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only283.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2830 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2830.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2830.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2831 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2831.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2831.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2832 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2832.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2832.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2833 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2833.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2833.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2834 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2834.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2834.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2835 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2835.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2835.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2836 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2836.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2836.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2837 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2837.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2837.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2838 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2838.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2838.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2839 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2839.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2839.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only284 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only284.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only284.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2840 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2840.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2840.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2841 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2841.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2841.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2842 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2842.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2842.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2843 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2843.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2843.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2844 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2844.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2844.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2845 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2845.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2845.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2846 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2846.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2846.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2847 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2847.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2847.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2848 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2848.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2848.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2849 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2849.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2849.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only285 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only285.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only285.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2850 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2850.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2850.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2851 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2851.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2851.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2852 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2852.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2852.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2853 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2853.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2853.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2854 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2854.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2854.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2855 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2855.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2855.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2856 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2856.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2856.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2857 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2857.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2857.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2858 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2858.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2858.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2859 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2859.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2859.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only286 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only286.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only286.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2860 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2860.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2860.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2861 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2861.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2861.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2862 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2862.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2862.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2863 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2863.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2863.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2864 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2864.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2864.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2865 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2865.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2865.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2866 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2866.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2866.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2867 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2867.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2867.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2868 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2868.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2868.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2869 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2869.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2869.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only287 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only287.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only287.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2870 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2870.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2870.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2871 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2871.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2871.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2872 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2872.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2872.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2873 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2873.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2873.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2874 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2874.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2874.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2875 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2875.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2875.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2876 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2876.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2876.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2877 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2877.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2877.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2878 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2878.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2878.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2879 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2879.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2879.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only288 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only288.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only288.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2880 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2880.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2880.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2881 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2881.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2881.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2882 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2882.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2882.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2883 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2883.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2883.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2884 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2884.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2884.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2885 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2885.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2885.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2886 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2886.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2886.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2887 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2887.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2887.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2888 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2888.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2888.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2889 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2889.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2889.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only289 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only289.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only289.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2890 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2890.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2890.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2891 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2891.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2891.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2892 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2892.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2892.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2893 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2893.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2893.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2894 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2894.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2894.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2895 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2895.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2895.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2896 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2896.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2896.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2897 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2897.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2897.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2898 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2898.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2898.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2899 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2899.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2899.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only29 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only29.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only29.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only290 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only290.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only290.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2900 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2900.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2900.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2901 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2901.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2901.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2902 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2902.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2902.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2903 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2903.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2903.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2904 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2904.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2904.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2905 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2905.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2905.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2906 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2906.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2906.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2907 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2907.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2907.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2908 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2908.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2908.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2909 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2909.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2909.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only291 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only291.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only291.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2910 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2910.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2910.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2911 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2911.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2911.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2912 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2912.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2912.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2913 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2913.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2913.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2914 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2914.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2914.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2915 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2915.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2915.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2916 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2916.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2916.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2917 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2917.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2917.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2918 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2918.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2918.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2919 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2919.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2919.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only292 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only292.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only292.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2920 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2920.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2920.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2921 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2921.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2921.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2922 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2922.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2922.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2923 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2923.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2923.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2924 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2924.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2924.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2925 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2925.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2925.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2926 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2926.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2926.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2927 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2927.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2927.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2928 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2928.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2928.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2929 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2929.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2929.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only293 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only293.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only293.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2930 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2930.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2930.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2931 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2931.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2931.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2932 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2932.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2932.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2933 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2933.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2933.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2934 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2934.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2934.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2935 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2935.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2935.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2936 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2936.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2936.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2937 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2937.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2937.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2938 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2938.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2938.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2939 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2939.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2939.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only294 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only294.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only294.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2940 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2940.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2940.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2941 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2941.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2941.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2942 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2942.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2942.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2943 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2943.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2943.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2944 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2944.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2944.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2945 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2945.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2945.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2946 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2946.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2946.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2947 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2947.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2947.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2948 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2948.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2948.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2949 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2949.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2949.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only295 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only295.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only295.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2950 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2950.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2950.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2951 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2951.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2951.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2952 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2952.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2952.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2953 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2953.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2953.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2954 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2954.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2954.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2955 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2955.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2955.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2956 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2956.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2956.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2957 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2957.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2957.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2958 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2958.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2958.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2959 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2959.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2959.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only296 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only296.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only296.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2960 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2960.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2960.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2961 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2961.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2961.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2962 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2962.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2962.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2963 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2963.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2963.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2964 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2964.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2964.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2965 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2965.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2965.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2966 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2966.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2966.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2967 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2967.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2967.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2968 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2968.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2968.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2969 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2969.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2969.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only297 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only297.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only297.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2970 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2970.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2970.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2971 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2971.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2971.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2972 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2972.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2972.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2973 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2973.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2973.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2974 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2974.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2974.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2975 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2975.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2975.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2976 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2976.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2976.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2977 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2977.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2977.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2978 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2978.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2978.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2979 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2979.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2979.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only298 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only298.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only298.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2980 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2980.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2980.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2981 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2981.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2981.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2982 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2982.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2982.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2983 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2983.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2983.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2984 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2984.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2984.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2985 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2985.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2985.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2986 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2986.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2986.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2987 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2987.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2987.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2988 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2988.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2988.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2989 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2989.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2989.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only299 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only299.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only299.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2990 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2990.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2990.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2991 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2991.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2991.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2992 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2992.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2992.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2993 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2993.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2993.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2994 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2994.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2994.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2995 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2995.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2995.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2996 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2996.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2996.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2997 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2997.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2997.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2998 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2998.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2998.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2999 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2999.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only2999.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only30 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only30.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only30.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only300 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only300.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only300.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3000 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3000.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3000.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3001 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3001.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3001.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3002 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3002.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3002.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3003 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3003.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3003.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3004 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3004.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3004.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3005 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3005.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3005.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3006 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3006.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3006.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3007 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3007.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3007.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3008 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3008.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3008.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3009 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3009.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3009.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only301 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only301.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only301.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3010 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3010.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3010.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3011 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3011.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3011.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3012 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3012.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3012.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3013 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3013.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3013.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3014 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3014.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3014.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3015 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3015.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3015.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3016 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3016.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3016.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3017 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3017.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3017.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3018 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3018.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3018.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3019 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3019.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3019.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only302 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only302.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only302.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3020 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3020.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3020.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3021 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3021.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3021.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3022 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3022.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3022.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3023 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3023.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3023.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3024 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3024.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3024.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3025 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3025.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3025.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3026 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3026.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3026.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3027 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3027.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3027.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3028 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3028.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3028.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3029 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3029.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3029.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only303 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only303.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only303.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3030 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3030.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3030.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3031 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3031.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3031.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3032 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3032.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3032.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3033 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3033.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3033.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3034 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3034.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3034.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3035 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3035.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3035.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3036 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3036.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3036.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3037 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3037.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3037.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3038 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3038.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3038.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3039 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3039.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3039.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only304 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only304.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only304.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3040 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3040.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3040.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3041 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3041.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3041.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3042 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3042.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3042.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3043 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3043.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3043.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3044 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3044.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3044.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3045 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3045.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3045.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3046 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3046.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3046.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3047 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3047.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3047.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3048 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3048.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3048.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3049 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3049.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3049.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only305 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only305.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only305.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3050 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3050.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3050.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3051 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3051.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3051.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3052 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3052.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3052.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3053 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3053.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3053.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3054 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3054.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3054.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3055 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3055.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3055.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3056 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3056.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3056.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3057 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3057.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3057.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3058 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3058.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3058.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3059 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3059.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3059.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only306 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only306.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only306.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3060 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3060.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3060.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3061 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3061.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3061.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3062 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3062.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3062.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3063 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3063.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3063.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3064 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3064.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3064.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3065 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3065.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3065.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3066 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3066.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3066.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3067 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3067.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3067.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3068 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3068.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3068.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3069 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3069.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3069.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only307 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only307.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only307.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3070 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3070.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3070.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3071 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3071.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3071.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3072 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3072.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3072.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3073 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3073.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3073.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3074 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3074.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3074.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3075 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3075.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3075.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3076 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3076.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3076.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3077 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3077.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3077.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3078 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3078.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3078.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3079 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3079.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3079.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only308 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only308.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only308.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3080 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3080.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3080.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3081 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3081.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3081.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3082 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3082.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3082.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3083 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3083.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3083.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3084 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3084.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3084.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3085 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3085.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3085.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3086 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3086.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3086.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3087 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3087.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3087.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3088 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3088.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3088.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3089 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3089.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3089.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only309 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only309.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only309.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3090 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3090.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3090.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3091 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3091.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3091.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3092 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3092.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3092.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3093 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3093.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3093.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3094 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3094.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3094.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3095 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3095.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3095.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3096 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3096.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3096.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3097 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3097.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3097.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3098 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3098.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3098.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3099 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3099.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3099.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only31 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only31.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only31.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only310 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only310.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only310.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3100 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3100.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3100.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3101 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3101.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3101.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3102 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3102.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3102.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3103 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3103.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3103.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3104 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3104.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3104.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3105 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3105.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3105.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3106 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3106.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3106.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3107 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3107.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3107.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3108 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3108.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3108.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3109 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3109.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3109.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only311 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only311.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only311.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3110 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3110.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3110.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3111 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3111.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3111.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3112 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3112.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3112.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3113 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3113.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3113.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3114 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3114.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3114.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3115 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3115.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3115.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3116 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3116.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3116.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3117 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3117.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3117.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3118 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3118.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3118.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3119 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3119.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3119.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only312 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only312.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only312.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3120 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3120.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3120.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3121 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3121.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3121.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3122 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3122.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3122.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3123 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3123.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3123.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3124 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3124.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3124.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3125 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3125.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3125.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3126 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3126.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3126.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3127 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3127.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3127.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3128 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3128.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3128.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3129 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3129.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3129.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only313 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only313.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only313.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3130 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3130.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3130.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3131 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3131.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3131.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3132 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3132.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3132.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3133 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3133.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3133.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3134 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3134.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3134.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3135 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3135.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only3135.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only314 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only314.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only314.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only315 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only315.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only315.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only316 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only316.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only316.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only317 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only317.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only317.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only318 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only318.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only318.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only319 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only319.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only319.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only32 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only32.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only32.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only320 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only320.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only320.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only321 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only321.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only321.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only322 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only322.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only322.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only323 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only323.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only323.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only324 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only324.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only324.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only325 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only325.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only325.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only326 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only326.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only326.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only327 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only327.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only327.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only328 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only328.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only328.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only329 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only329.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only329.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only33 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only33.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only33.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only330 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only330.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only330.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only331 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only331.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only331.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only332 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only332.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only332.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only333 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only333.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only333.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only334 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only334.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only334.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only335 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only335.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only335.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only336 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only336.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only336.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only337 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only337.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only337.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only338 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only338.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only338.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only339 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only339.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only339.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only34 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only34.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only34.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only340 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only340.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only340.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only341 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only341.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only341.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only342 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only342.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only342.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only343 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only343.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only343.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only344 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only344.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only344.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only345 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only345.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only345.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only346 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only346.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only346.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only347 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only347.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only347.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only348 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only348.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only348.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only349 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only349.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only349.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only35 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only35.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only35.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only350 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only350.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only350.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only351 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only351.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only351.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only352 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only352.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only352.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only353 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only353.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only353.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only354 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only354.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only354.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only355 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only355.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only355.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only356 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only356.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only356.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only357 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only357.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only357.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only358 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only358.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only358.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only359 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only359.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only359.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only36 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only36.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only36.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only360 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only360.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only360.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only361 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only361.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only361.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only362 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only362.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only362.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only363 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only363.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only363.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only364 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only364.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only364.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only365 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only365.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only365.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only366 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only366.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only366.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only367 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only367.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only367.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only368 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only368.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only368.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only369 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only369.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only369.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only37 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only37.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only37.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only370 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only370.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only370.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only371 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only371.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only371.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only372 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only372.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only372.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only373 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only373.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only373.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only374 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only374.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only374.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only375 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only375.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only375.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only376 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only376.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only376.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only377 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only377.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only377.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only378 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only378.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only378.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only379 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only379.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only379.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only38 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only38.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only38.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only380 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only380.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only380.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only381 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only381.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only381.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only382 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only382.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only382.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only383 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only383.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only383.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only384 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only384.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only384.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only385 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only385.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only385.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only386 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only386.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only386.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only387 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only387.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only387.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only388 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only388.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only388.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only389 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only389.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only389.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only39 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only39.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only39.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only390 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only390.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only390.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only391 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only391.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only391.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only392 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only392.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only392.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only393 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only393.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only393.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only394 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only394.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only394.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only395 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only395.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only395.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only396 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only396.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only396.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only397 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only397.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only397.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only398 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only398.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only398.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only399 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only399.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only399.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only4 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only4.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only40 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only40.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only40.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only400 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only400.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only400.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only401 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only401.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only401.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only402 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only402.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only402.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only403 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only403.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only403.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only404 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only404.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only404.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only405 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only405.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only405.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only406 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only406.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only406.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only407 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only407.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only407.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only408 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only408.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only408.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only409 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only409.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only409.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only41 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only41.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only41.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only410 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only410.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only410.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only411 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only411.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only411.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only412 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only412.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only412.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only413 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only413.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only413.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only414 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only414.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only414.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only415 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only415.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only415.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only416 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only416.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only416.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only417 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only417.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only417.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only418 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only418.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only418.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only419 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only419.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only419.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only42 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only42.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only42.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only420 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only420.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only420.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only421 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only421.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only421.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only422 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only422.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only422.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only423 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only423.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only423.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only424 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only424.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only424.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only425 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only425.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only425.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only426 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only426.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only426.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only427 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only427.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only427.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only428 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only428.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only428.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only429 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only429.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only429.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only43 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only43.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only43.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only430 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only430.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only430.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only431 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only431.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only431.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only432 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only432.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only432.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only433 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only433.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only433.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only434 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only434.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only434.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only435 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only435.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only435.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only436 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only436.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only436.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only437 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only437.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only437.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only438 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only438.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only438.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only439 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only439.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only439.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only44 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only44.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only44.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only440 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only440.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only440.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only441 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only441.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only441.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only442 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only442.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only442.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only443 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only443.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only443.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only444 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only444.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only444.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only445 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only445.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only445.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only446 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only446.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only446.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only447 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only447.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only447.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only448 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only448.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only448.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only449 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only449.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only449.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only45 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only45.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only45.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only450 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only450.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only450.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only451 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only451.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only451.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only452 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only452.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only452.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only453 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only453.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only453.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only454 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only454.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only454.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only455 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only455.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only455.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only456 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only456.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only456.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only457 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only457.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only457.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only458 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only458.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only458.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only459 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only459.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only459.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only46 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only46.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only46.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only460 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only460.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only460.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only461 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only461.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only461.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only462 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only462.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only462.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only463 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only463.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only463.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only464 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only464.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only464.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only465 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only465.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only465.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only466 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only466.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only466.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only467 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only467.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only467.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only468 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only468.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only468.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only469 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only469.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only469.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only47 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only47.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only47.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only470 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only470.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only470.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only471 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only471.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only471.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only472 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only472.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only472.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only473 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only473.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only473.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only474 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only474.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only474.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only475 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only475.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only475.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only476 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only476.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only476.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only477 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only477.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only477.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only478 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only478.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only478.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only479 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only479.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only479.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only48 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only48.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only48.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only480 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only480.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only480.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only481 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only481.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only481.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only482 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only482.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only482.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only483 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only483.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only483.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only484 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only484.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only484.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only485 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only485.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only485.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only486 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only486.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only486.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only487 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only487.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only487.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only488 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only488.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only488.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only489 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only489.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only489.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only49 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only49.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only49.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only490 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only490.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only490.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only491 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only491.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only491.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only492 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only492.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only492.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only493 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only493.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only493.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only494 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only494.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only494.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only495 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only495.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only495.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only496 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only496.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only496.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only497 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only497.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only497.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only498 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only498.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only498.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only499 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only499.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only499.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only5 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only5.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only50 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only50.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only50.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only500 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only500.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only500.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only501 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only501.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only501.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only502 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only502.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only502.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only503 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only503.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only503.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only504 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only504.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only504.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only505 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only505.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only505.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only506 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only506.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only506.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only507 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only507.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only507.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only508 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only508.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only508.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only509 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only509.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only509.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only51 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only51.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only51.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only510 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only510.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only510.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only511 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only511.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only511.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only512 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only512.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only512.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only513 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only513.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only513.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only514 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only514.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only514.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only515 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only515.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only515.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only516 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only516.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only516.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only517 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only517.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only517.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only518 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only518.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only518.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only519 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only519.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only519.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only52 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only52.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only52.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only520 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only520.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only520.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only521 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only521.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only521.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only522 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only522.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only522.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only523 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only523.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only523.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only524 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only524.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only524.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only525 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only525.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only525.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only526 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only526.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only526.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only527 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only527.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only527.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only528 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only528.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only528.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only529 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only529.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only529.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only53 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only53.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only53.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only530 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only530.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only530.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only531 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only531.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only531.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only532 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only532.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only532.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only533 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only533.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only533.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only534 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only534.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only534.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only535 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only535.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only535.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only536 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only536.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only536.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only537 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only537.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only537.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only538 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only538.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only538.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only539 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only539.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only539.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only54 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only54.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only54.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only540 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only540.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only540.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only541 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only541.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only541.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only542 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only542.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only542.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only543 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only543.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only543.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only544 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only544.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only544.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only545 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only545.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only545.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only546 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only546.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only546.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only547 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only547.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only547.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only548 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only548.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only548.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only549 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only549.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only549.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only55 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only55.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only55.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only550 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only550.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only550.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only551 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only551.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only551.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only552 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only552.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only552.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only553 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only553.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only553.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only554 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only554.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only554.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only555 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only555.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only555.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only556 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only556.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only556.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only557 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only557.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only557.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only558 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only558.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only558.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only559 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only559.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only559.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only56 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only56.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only56.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only560 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only560.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only560.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only561 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only561.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only561.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only562 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only562.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only562.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only563 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only563.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only563.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only564 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only564.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only564.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only565 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only565.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only565.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only566 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only566.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only566.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only567 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only567.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only567.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only568 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only568.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only568.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only569 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only569.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only569.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only57 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only57.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only57.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only570 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only570.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only570.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only571 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only571.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only571.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only572 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only572.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only572.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only573 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only573.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only573.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only574 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only574.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only574.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only575 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only575.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only575.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only576 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only576.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only576.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only577 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only577.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only577.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only578 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only578.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only578.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only579 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only579.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only579.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only58 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only58.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only58.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only580 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only580.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only580.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only581 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only581.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only581.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only582 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only582.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only582.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only583 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only583.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only583.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only584 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only584.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only584.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only585 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only585.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only585.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only586 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only586.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only586.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only587 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only587.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only587.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only588 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only588.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only588.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only589 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only589.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only589.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only59 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only59.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only59.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only590 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only590.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only590.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only591 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only591.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only591.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only592 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only592.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only592.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only593 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only593.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only593.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only594 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only594.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only594.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only595 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only595.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only595.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only596 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only596.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only596.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only597 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only597.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only597.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only598 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only598.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only598.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only599 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only599.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only599.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only6 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only6.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only6.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only60 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only60.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only60.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only600 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only600.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only600.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only601 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only601.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only601.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only602 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only602.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only602.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only603 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only603.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only603.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only604 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only604.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only604.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only605 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only605.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only605.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only606 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only606.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only606.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only607 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only607.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only607.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only608 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only608.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only608.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only609 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only609.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only609.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only61 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only61.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only61.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only610 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only610.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only610.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only611 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only611.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only611.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only612 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only612.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only612.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only613 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only613.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only613.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only614 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only614.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only614.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only615 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only615.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only615.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only616 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only616.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only616.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only617 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only617.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only617.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only618 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only618.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only618.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only619 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only619.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only619.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only62 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only62.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only62.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only620 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only620.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only620.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only621 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only621.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only621.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only622 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only622.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only622.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only623 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only623.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only623.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only624 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only624.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only624.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only625 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only625.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only625.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only626 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only626.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only626.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only627 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only627.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only627.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only628 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only628.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only628.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only629 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only629.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only629.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only63 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only63.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only63.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only630 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only630.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only630.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only631 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only631.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only631.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only632 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only632.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only632.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only633 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only633.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only633.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only634 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only634.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only634.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only635 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only635.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only635.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only636 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only636.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only636.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only637 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only637.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only637.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only638 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only638.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only638.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only639 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only639.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only639.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only64 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only64.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only64.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only640 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only640.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only640.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only641 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only641.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only641.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only642 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only642.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only642.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only643 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only643.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only643.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only644 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only644.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only644.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only645 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only645.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only645.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only646 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only646.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only646.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only647 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only647.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only647.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only648 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only648.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only648.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only649 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only649.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only649.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only65 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only65.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only65.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only650 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only650.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only650.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only651 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only651.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only651.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only652 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only652.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only652.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only653 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only653.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only653.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only654 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only654.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only654.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only655 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only655.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only655.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only656 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only656.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only656.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only657 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only657.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only657.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only658 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only658.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only658.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only659 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only659.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only659.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only66 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only66.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only66.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only660 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only660.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only660.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only661 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only661.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only661.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only662 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only662.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only662.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only663 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only663.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only663.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only664 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only664.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only664.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only665 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only665.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only665.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only666 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only666.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only666.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only667 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only667.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only667.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only668 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only668.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only668.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only669 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only669.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only669.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only67 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only67.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only67.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only670 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only670.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only670.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only671 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only671.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only671.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only672 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only672.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only672.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only673 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only673.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only673.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only674 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only674.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only674.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only675 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only675.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only675.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only676 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only676.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only676.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only677 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only677.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only677.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only678 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only678.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only678.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only679 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only679.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only679.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only68 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only68.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only68.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only680 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only680.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only680.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only681 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only681.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only681.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only682 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only682.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only682.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only683 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only683.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only683.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only684 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only684.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only684.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only685 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only685.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only685.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only686 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only686.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only686.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only687 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only687.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only687.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only688 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only688.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only688.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only689 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only689.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only689.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only69 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only69.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only69.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only690 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only690.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only690.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only691 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only691.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only691.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only692 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only692.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only692.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only693 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only693.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only693.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only694 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only694.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only694.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only695 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only695.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only695.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only696 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only696.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only696.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only697 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only697.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only697.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only698 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only698.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only698.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only699 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only699.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only699.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only7 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only7.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only7.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only70 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only70.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only70.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only700 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only700.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only700.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only701 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only701.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only701.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only702 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only702.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only702.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only703 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only703.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only703.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only704 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only704.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only704.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only705 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only705.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only705.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only706 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only706.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only706.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only707 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only707.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only707.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only708 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only708.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only708.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only709 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only709.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only709.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only71 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only71.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only71.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only710 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only710.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only710.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only711 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only711.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only711.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only712 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only712.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only712.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only713 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only713.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only713.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only714 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only714.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only714.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only715 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only715.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only715.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only716 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only716.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only716.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only717 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only717.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only717.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only718 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only718.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only718.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only719 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only719.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only719.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only72 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only72.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only72.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only720 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only720.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only720.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only721 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only721.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only721.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only722 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only722.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only722.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only723 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only723.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only723.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only724 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only724.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only724.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only725 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only725.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only725.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only726 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only726.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only726.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only727 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only727.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only727.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only728 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only728.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only728.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only729 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only729.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only729.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only73 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only73.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only73.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only730 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only730.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only730.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only731 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only731.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only731.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only732 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only732.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only732.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only733 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only733.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only733.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only734 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only734.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only734.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only735 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only735.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only735.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only736 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only736.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only736.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only737 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only737.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only737.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only738 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only738.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only738.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only739 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only739.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only739.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only74 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only74.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only74.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only740 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only740.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only740.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only741 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only741.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only741.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only742 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only742.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only742.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only743 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only743.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only743.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only744 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only744.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only744.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only745 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only745.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only745.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only746 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only746.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only746.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only747 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only747.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only747.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only748 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only748.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only748.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only749 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only749.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only749.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only75 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only75.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only75.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only750 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only750.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only750.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only751 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only751.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only751.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only752 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only752.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only752.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only753 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only753.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only753.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only754 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only754.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only754.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only755 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only755.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only755.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only756 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only756.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only756.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only757 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only757.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only757.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only758 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only758.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only758.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only759 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only759.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only759.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only76 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only76.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only76.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only760 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only760.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only760.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only761 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only761.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only761.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only762 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only762.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only762.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only763 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only763.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only763.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only764 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only764.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only764.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only765 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only765.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only765.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only766 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only766.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only766.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only767 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only767.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only767.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only768 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only768.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only768.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only769 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only769.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only769.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only77 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only77.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only77.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only770 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only770.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only770.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only771 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only771.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only771.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only772 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only772.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only772.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only773 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only773.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only773.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only774 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only774.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only774.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only775 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only775.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only775.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only776 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only776.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only776.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only777 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only777.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only777.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only778 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only778.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only778.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only779 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only779.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only779.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only78 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only78.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only78.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only780 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only780.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only780.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only781 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only781.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only781.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only782 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only782.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only782.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only783 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only783.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only783.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only784 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only784.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only784.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only785 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only785.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only785.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only786 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only786.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only786.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only787 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only787.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only787.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only788 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only788.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only788.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only789 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only789.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only789.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only79 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only79.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only79.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only790 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only790.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only790.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only791 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only791.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only791.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only792 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only792.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only792.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only793 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only793.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only793.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only794 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only794.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only794.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only795 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only795.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only795.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only796 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only796.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only796.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only797 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only797.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only797.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only798 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only798.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only798.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only799 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only799.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only799.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only8 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only8.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only8.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only80 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only80.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only80.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only800 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only800.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only800.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only801 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only801.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only801.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only802 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only802.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only802.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only803 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only803.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only803.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only804 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only804.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only804.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only805 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only805.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only805.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only806 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only806.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only806.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only807 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only807.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only807.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only808 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only808.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only808.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only809 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only809.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only809.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only81 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only81.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only81.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only810 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only810.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only810.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only811 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only811.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only811.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only812 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only812.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only812.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only813 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only813.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only813.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only814 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only814.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only814.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only815 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only815.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only815.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only816 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only816.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only816.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only817 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only817.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only817.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only818 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only818.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only818.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only819 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only819.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only819.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only82 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only82.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only82.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only820 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only820.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only820.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only821 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only821.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only821.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only822 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only822.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only822.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only823 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only823.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only823.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only824 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only824.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only824.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only825 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only825.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only825.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only826 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only826.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only826.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only827 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only827.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only827.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only828 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only828.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only828.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only829 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only829.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only829.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only83 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only83.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only83.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only830 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only830.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only830.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only831 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only831.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only831.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only832 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only832.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only832.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only833 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only833.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only833.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only834 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only834.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only834.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only835 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only835.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only835.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only836 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only836.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only836.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only837 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only837.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only837.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only838 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only838.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only838.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only839 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only839.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only839.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only84 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only84.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only84.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only840 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only840.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only840.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only841 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only841.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only841.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only842 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only842.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only842.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only843 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only843.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only843.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only844 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only844.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only844.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only845 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only845.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only845.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only846 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only846.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only846.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only847 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only847.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only847.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only848 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only848.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only848.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only849 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only849.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only849.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only85 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only85.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only85.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only850 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only850.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only850.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only851 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only851.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only851.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only852 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only852.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only852.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only853 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only853.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only853.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only854 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only854.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only854.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only855 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only855.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only855.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only856 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only856.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only856.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only857 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only857.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only857.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only858 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only858.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only858.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only859 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only859.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only859.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only86 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only86.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only86.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only860 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only860.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only860.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only861 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only861.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only861.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only862 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only862.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only862.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only863 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only863.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only863.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only864 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only864.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only864.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only865 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only865.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only865.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only866 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only866.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only866.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only867 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only867.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only867.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only868 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only868.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only868.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only869 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only869.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only869.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only87 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only87.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only87.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only870 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only870.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only870.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only871 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only871.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only871.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only872 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only872.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only872.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only873 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only873.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only873.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only874 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only874.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only874.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only875 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only875.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only875.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only876 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only876.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only876.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only877 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only877.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only877.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only878 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only878.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only878.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only879 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only879.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only879.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only88 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only88.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only88.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only880 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only880.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only880.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only881 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only881.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only881.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only882 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only882.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only882.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only883 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only883.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only883.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only884 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only884.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only884.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only885 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only885.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only885.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only886 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only886.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only886.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only887 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only887.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only887.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only888 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only888.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only888.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only889 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only889.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only889.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only89 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only89.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only89.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only890 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only890.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only890.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only891 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only891.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only891.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only892 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only892.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only892.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only893 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only893.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only893.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only894 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only894.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only894.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only895 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only895.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only895.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only896 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only896.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only896.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only897 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only897.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only897.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only898 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only898.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only898.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only899 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only899.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only899.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only9 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only9.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only9.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only90 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only90.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only90.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only900 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only900.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only900.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only901 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only901.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only901.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only902 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only902.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only902.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only903 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only903.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only903.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only904 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only904.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only904.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only905 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only905.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only905.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only906 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only906.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only906.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only907 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only907.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only907.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only908 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only908.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only908.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only909 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only909.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only909.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only91 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only91.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only91.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only910 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only910.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only910.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only911 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only911.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only911.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only912 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only912.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only912.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only913 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only913.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only913.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only914 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only914.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only914.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only915 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only915.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only915.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only916 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only916.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only916.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only917 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only917.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only917.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only918 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only918.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only918.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only919 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only919.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only919.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only92 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only92.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only92.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only920 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only920.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only920.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only921 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only921.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only921.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only922 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only922.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only922.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only923 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only923.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only923.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only924 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only924.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only924.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only925 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only925.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only925.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only926 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only926.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only926.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only927 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only927.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only927.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only928 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only928.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only928.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only929 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only929.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only929.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only93 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only93.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only93.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only930 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only930.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only930.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only931 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only931.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only931.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only932 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only932.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only932.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only933 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only933.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only933.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only934 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only934.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only934.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only935 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only935.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only935.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only936 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only936.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only936.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only937 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only937.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only937.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only938 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only938.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only938.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only939 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only939.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only939.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only94 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only94.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only94.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only940 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only940.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only940.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only941 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only941.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only941.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only942 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only942.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only942.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only943 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only943.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only943.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only944 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only944.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only944.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only945 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only945.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only945.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only946 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only946.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only946.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only947 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only947.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only947.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only948 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only948.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only948.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only949 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only949.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only949.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only95 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only95.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only95.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only950 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only950.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only950.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only951 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only951.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only951.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only952 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only952.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only952.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only953 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only953.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only953.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only954 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only954.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only954.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only955 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only955.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only955.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only956 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only956.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only956.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only957 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only957.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only957.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only958 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only958.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only958.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only959 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only959.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only959.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only96 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only96.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only96.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only960 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only960.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only960.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only961 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only961.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only961.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only962 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only962.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only962.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only963 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only963.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only963.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only964 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only964.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only964.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only965 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only965.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only965.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only966 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only966.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only966.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only967 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only967.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only967.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only968 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only968.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only968.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only969 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only969.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only969.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only97 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only97.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only97.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only970 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only970.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only970.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only971 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only971.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only971.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only972 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only972.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only972.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only973 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only973.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only973.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only974 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only974.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only974.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only975 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only975.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only975.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only976 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only976.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only976.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only977 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only977.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only977.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only978 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only978.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only978.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only979 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only979.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only979.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only98 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only98.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only98.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only980 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only980.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only980.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only981 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only981.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only981.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only982 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only982.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only982.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only983 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only983.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only983.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only984 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only984.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only984.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only985 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only985.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only985.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only986 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only986.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only986.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only987 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only987.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only987.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only988 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only988.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only988.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only989 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only989.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only989.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only99 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only99.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only99.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only990 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only990.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only990.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only991 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only991.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only991.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only992 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only992.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only992.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only993 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only993.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only993.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only994 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only994.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only994.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only995 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only995.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only995.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only996 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only996.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only996.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only997 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only997.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only997.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only998 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only998.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only998.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only999 0.5 pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only999.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_146-SMAC.m6A-GC-CG-only999.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only0 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only10 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only10.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only10.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only100 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only100.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only100.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1000 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1000.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1000.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1001 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1001.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1001.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1002 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1002.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1002.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1003 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1003.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1003.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1004 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1004.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1004.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1005 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1005.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1005.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1006 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1006.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1006.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1007 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1007.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1007.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1008 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1008.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1008.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1009 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1009.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1009.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only101 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only101.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only101.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1010 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1010.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1010.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1011 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1011.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1011.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1012 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1012.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1012.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1013 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1013.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1013.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1014 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1014.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1014.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1015 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1015.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1015.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1016 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1016.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1016.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1017 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1017.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1017.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1018 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1018.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1018.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1019 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1019.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1019.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only102 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only102.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only102.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1020 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1020.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1020.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1021 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1021.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1021.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1022 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1022.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1022.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1023 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1023.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1023.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1024 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1024.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1024.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1025 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1025.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1025.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1026 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1026.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1026.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1027 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1027.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1027.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1028 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1028.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1028.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1029 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1029.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1029.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only103 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only103.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only103.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1030 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1030.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1030.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1031 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1031.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1031.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1032 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1032.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1032.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1033 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1033.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1033.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1034 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1034.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1034.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1035 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1035.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1035.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1036 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1036.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1036.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1037 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1037.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1037.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1038 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1038.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1038.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1039 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1039.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1039.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only104 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only104.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only104.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1040 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1040.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1040.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1041 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1041.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1041.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1042 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1042.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1042.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1043 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1043.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1043.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1044 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1044.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1044.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1045 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1045.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1045.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1046 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1046.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1046.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1047 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1047.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1047.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1048 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1048.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1048.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1049 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1049.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1049.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only105 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only105.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only105.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1050 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1050.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1050.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1051 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1051.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1051.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1052 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1052.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1052.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1053 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1053.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1053.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1054 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1054.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1054.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1055 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1055.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1055.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1056 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1056.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1056.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1057 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1057.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1057.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1058 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1058.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1058.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1059 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1059.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1059.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only106 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only106.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only106.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1060 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1060.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1060.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1061 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1061.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1061.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1062 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1062.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1062.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1063 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1063.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1063.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1064 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1064.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1064.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1065 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1065.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1065.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1066 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1066.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1066.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1067 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1067.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1067.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1068 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1068.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1068.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1069 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1069.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1069.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only107 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only107.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only107.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1070 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1070.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1070.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1071 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1071.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1071.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1072 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1072.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1072.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1073 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1073.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1073.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1074 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1074.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1074.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1075 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1075.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1075.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1076 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1076.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1076.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1077 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1077.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1077.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1078 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1078.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1078.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1079 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1079.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1079.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only108 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only108.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only108.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1080 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1080.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1080.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1081 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1081.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1081.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1082 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1082.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1082.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1083 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1083.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1083.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1084 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1084.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1084.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1085 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1085.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1085.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1086 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1086.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1086.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1087 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1087.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1087.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1088 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1088.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1088.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1089 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1089.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1089.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only109 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only109.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only109.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1090 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1090.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1090.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1091 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1091.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1091.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1092 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1092.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1092.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1093 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1093.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1093.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1094 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1094.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1094.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1095 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1095.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1095.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1096 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1096.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1096.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1097 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1097.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1097.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1098 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1098.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1098.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1099 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1099.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1099.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only11 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only11.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only11.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only110 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only110.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only110.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1100 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1100.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1100.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1101 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1101.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1101.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1102 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1102.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1102.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1103 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1103.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1103.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1104 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1104.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1104.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1105 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1105.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1105.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1106 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1106.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1106.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1107 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1107.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1107.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1108 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1108.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1108.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1109 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1109.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1109.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only111 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only111.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only111.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1110 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1110.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1110.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1111 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1111.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1111.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1112 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1112.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1112.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1113 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1113.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1113.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1114 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1114.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1114.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1115 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1115.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1115.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1116 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1116.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1116.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1117 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1117.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1117.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1118 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1118.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1118.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1119 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1119.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1119.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only112 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only112.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only112.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1120 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1120.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1120.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1121 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1121.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1121.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1122 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1122.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1122.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1123 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1123.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1123.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1124 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1124.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1124.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1125 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1125.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1125.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1126 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1126.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1126.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1127 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1127.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1127.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1128 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1128.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1128.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1129 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1129.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1129.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only113 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only113.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only113.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1130 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1130.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1130.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1131 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1131.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1131.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1132 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1132.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1132.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1133 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1133.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1133.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1134 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1134.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1134.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1135 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1135.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1135.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1136 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1136.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1136.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1137 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1137.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1137.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1138 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1138.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1138.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1139 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1139.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1139.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only114 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only114.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only114.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1140 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1140.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1140.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1141 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1141.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1141.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1142 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1142.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1142.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1143 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1143.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1143.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1144 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1144.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1144.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1145 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1145.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1145.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1146 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1146.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1146.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1147 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1147.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1147.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1148 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1148.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1148.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1149 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1149.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1149.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only115 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only115.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only115.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1150 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1150.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1150.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1151 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1151.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1151.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1152 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1152.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1152.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1153 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1153.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1153.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1154 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1154.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1154.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1155 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1155.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1155.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1156 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1156.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1156.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1157 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1157.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1157.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1158 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1158.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1158.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1159 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1159.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1159.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only116 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only116.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only116.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1160 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1160.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1160.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1161 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1161.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1161.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1162 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1162.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1162.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1163 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1163.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1163.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1164 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1164.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1164.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1165 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1165.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1165.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1166 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1166.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1166.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1167 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1167.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1167.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1168 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1168.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1168.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1169 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1169.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1169.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only117 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only117.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only117.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1170 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1170.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1170.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1171 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1171.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1171.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1172 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1172.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1172.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1173 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1173.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1173.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1174 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1174.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1174.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1175 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1175.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1175.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1176 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1176.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1176.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1177 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1177.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1177.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1178 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1178.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1178.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1179 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1179.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1179.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only118 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only118.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only118.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1180 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1180.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1180.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1181 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1181.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1181.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1182 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1182.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1182.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1183 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1183.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1183.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1184 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1184.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1184.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1185 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1185.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1185.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1186 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1186.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1186.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1187 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1187.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1187.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1188 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1188.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1188.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1189 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1189.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1189.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only119 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only119.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only119.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1190 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1190.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1190.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1191 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1191.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1191.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1192 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1192.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1192.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1193 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1193.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1193.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1194 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1194.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1194.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1195 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1195.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1195.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1196 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1196.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1196.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1197 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1197.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1197.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1198 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1198.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1198.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1199 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1199.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1199.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only12 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only12.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only12.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only120 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only120.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only120.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1200 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1200.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1200.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1201 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1201.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1201.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1202 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1202.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1202.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1203 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1203.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1203.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1204 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1204.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1204.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1205 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1205.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1205.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1206 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1206.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1206.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1207 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1207.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1207.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1208 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1208.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1208.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1209 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1209.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1209.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only121 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only121.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only121.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1210 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1210.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1210.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1211 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1211.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1211.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1212 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1212.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1212.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1213 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1213.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1213.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1214 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1214.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1214.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1215 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1215.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1215.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1216 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1216.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1216.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1217 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1217.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1217.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1218 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1218.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1218.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1219 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1219.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1219.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only122 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only122.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only122.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1220 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1220.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1220.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1221 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1221.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1221.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1222 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1222.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1222.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1223 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1223.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1223.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1224 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1224.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1224.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1225 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1225.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1225.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1226 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1226.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1226.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1227 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1227.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1227.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1228 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1228.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1228.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1229 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1229.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1229.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only123 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only123.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only123.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1230 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1230.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1230.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1231 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1231.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1231.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1232 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1232.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1232.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1233 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1233.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1233.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1234 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1234.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1234.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1235 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1235.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1235.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1236 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1236.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1236.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1237 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1237.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1237.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1238 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1238.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1238.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1239 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1239.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1239.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only124 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only124.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only124.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1240 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1240.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1240.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1241 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1241.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1241.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1242 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1242.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1242.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1243 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1243.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1243.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1244 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1244.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1244.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1245 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1245.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1245.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1246 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1246.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1246.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1247 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1247.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1247.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1248 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1248.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1248.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1249 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1249.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1249.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only125 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only125.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only125.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1250 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1250.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1250.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1251 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1251.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1251.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1252 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1252.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1252.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1253 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1253.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1253.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1254 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1254.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1254.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1255 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1255.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1255.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1256 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1256.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1256.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1257 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1257.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1257.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1258 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1258.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1258.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1259 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1259.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1259.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only126 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only126.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only126.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1260 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1260.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1260.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1261 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1261.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1261.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1262 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1262.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1262.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1263 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1263.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1263.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1264 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1264.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1264.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1265 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1265.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1265.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1266 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1266.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1266.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1267 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1267.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1267.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1268 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1268.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1268.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1269 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1269.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1269.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only127 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only127.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only127.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1270 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1270.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1270.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1271 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1271.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1271.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1272 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1272.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1272.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1273 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1273.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1273.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1274 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1274.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1274.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1275 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1275.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1275.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1276 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1276.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1276.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1277 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1277.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1277.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1278 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1278.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1278.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1279 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1279.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1279.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only128 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only128.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only128.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1280 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1280.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1280.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1281 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1281.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1281.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1282 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1282.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1282.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1283 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1283.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1283.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1284 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1284.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1284.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1285 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1285.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1285.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1286 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1286.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1286.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1287 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1287.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1287.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1288 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1288.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1288.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1289 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1289.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1289.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only129 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only129.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only129.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1290 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1290.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1290.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1291 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1291.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1291.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1292 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1292.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1292.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1293 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1293.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1293.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1294 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1294.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1294.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1295 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1295.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1295.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1296 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1296.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1296.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1297 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1297.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1297.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1298 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1298.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1298.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1299 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1299.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1299.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only13 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only13.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only13.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only130 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only130.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only130.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1300 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1300.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1300.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1301 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1301.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1301.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1302 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1302.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1302.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1303 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1303.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1303.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1304 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1304.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1304.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1305 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1305.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1305.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1306 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1306.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1306.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1307 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1307.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1307.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1308 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1308.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1308.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1309 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1309.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1309.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only131 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only131.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only131.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1310 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1310.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1310.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1311 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1311.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1311.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1312 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1312.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1312.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1313 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1313.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1313.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1314 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1314.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1314.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1315 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1315.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1315.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1316 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1316.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1316.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1317 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1317.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1317.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1318 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1318.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1318.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1319 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1319.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1319.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only132 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only132.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only132.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1320 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1320.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1320.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1321 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1321.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1321.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1322 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1322.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1322.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1323 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1323.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1323.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1324 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1324.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1324.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1325 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1325.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1325.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1326 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1326.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1326.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1327 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1327.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1327.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1328 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1328.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1328.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1329 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1329.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1329.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only133 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only133.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only133.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1330 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1330.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1330.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1331 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1331.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1331.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1332 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1332.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1332.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1333 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1333.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1333.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1334 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1334.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1334.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1335 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1335.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1335.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1336 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1336.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1336.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1337 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1337.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1337.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1338 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1338.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1338.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1339 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1339.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1339.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only134 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only134.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only134.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1340 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1340.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1340.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1341 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1341.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1341.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1342 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1342.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1342.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1343 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1343.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1343.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1344 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1344.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1344.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1345 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1345.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1345.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1346 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1346.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1346.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1347 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1347.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1347.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1348 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1348.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1348.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1349 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1349.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1349.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only135 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only135.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only135.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1350 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1350.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1350.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1351 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1351.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1351.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1352 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1352.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1352.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1353 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1353.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1353.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1354 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1354.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1354.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1355 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1355.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1355.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1356 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1356.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1356.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1357 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1357.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1357.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1358 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1358.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1358.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1359 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1359.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1359.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only136 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only136.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only136.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1360 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1360.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1360.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1361 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1361.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1361.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1362 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1362.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1362.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1363 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1363.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1363.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1364 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1364.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1364.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1365 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1365.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1365.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1366 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1366.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1366.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1367 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1367.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1367.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1368 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1368.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1368.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1369 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1369.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1369.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only137 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only137.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only137.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1370 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1370.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1370.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1371 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1371.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1371.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1372 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1372.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1372.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1373 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1373.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1373.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1374 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1374.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1374.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1375 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1375.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1375.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1376 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1376.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1376.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1377 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1377.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1377.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1378 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1378.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1378.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1379 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1379.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1379.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only138 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only138.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only138.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1380 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1380.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1380.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1381 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1381.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1381.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1382 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1382.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1382.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1383 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1383.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1383.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1384 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1384.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1384.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1385 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1385.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1385.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1386 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1386.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1386.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1387 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1387.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1387.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1388 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1388.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1388.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1389 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1389.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1389.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only139 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only139.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only139.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1390 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1390.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1390.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1391 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1391.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1391.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1392 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1392.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1392.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1393 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1393.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1393.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1394 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1394.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1394.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1395 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1395.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1395.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1396 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1396.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1396.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1397 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1397.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1397.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1398 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1398.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1398.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1399 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1399.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1399.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only14 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only14.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only14.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only140 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only140.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only140.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1400 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1400.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1400.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1401 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1401.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1401.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1402 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1402.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1402.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1403 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1403.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1403.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1404 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1404.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1404.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1405 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1405.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1405.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1406 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1406.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1406.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1407 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1407.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1407.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1408 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1408.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1408.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1409 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1409.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1409.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only141 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only141.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only141.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1410 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1410.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1410.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1411 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1411.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1411.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1412 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1412.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1412.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1413 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1413.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1413.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1414 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1414.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1414.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1415 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1415.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1415.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1416 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1416.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1416.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1417 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1417.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1417.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1418 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1418.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1418.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1419 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1419.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1419.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only142 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only142.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only142.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1420 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1420.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1420.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1421 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1421.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1421.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1422 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1422.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1422.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1423 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1423.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1423.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1424 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1424.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1424.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1425 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1425.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1425.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1426 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1426.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1426.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1427 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1427.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1427.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1428 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1428.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1428.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1429 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1429.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1429.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only143 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only143.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only143.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1430 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1430.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1430.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1431 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1431.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1431.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1432 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1432.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1432.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1433 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1433.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1433.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1434 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1434.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1434.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1435 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1435.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1435.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1436 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1436.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1436.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1437 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1437.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1437.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1438 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1438.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1438.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1439 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1439.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1439.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only144 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only144.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only144.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1440 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1440.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1440.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1441 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1441.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1441.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1442 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1442.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1442.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1443 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1443.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1443.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1444 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1444.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1444.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1445 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1445.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1445.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1446 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1446.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1446.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1447 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1447.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1447.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1448 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1448.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1448.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1449 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1449.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1449.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only145 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only145.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only145.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1450 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1450.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1450.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1451 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1451.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1451.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1452 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1452.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1452.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1453 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1453.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1453.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1454 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1454.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1454.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1455 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1455.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1455.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1456 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1456.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1456.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1457 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1457.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1457.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1458 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1458.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1458.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1459 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1459.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1459.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only146 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only146.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only146.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1460 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1460.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1460.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1461 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1461.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1461.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1462 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1462.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1462.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1463 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1463.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1463.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1464 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1464.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1464.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1465 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1465.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1465.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1466 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1466.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1466.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1467 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1467.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1467.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1468 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1468.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1468.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1469 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1469.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1469.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only147 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only147.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only147.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1470 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1470.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1470.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1471 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1471.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1471.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1472 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1472.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1472.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1473 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1473.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1473.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1474 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1474.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1474.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1475 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1475.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1475.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1476 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1476.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1476.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1477 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1477.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1477.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1478 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1478.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1478.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1479 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1479.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1479.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only148 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only148.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only148.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1480 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1480.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1480.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1481 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1481.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1481.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1482 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1482.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1482.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1483 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1483.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1483.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1484 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1484.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1484.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1485 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1485.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1485.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1486 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1486.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1486.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1487 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1487.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1487.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1488 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1488.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1488.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1489 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1489.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1489.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only149 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only149.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only149.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1490 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1490.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1490.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1491 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1491.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1491.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1492 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1492.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1492.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1493 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1493.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1493.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1494 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1494.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1494.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1495 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1495.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1495.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1496 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1496.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1496.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1497 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1497.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1497.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1498 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1498.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1498.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1499 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1499.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1499.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only15 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only15.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only15.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only150 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only150.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only150.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1500 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1500.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1500.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1501 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1501.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1501.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1502 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1502.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1502.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1503 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1503.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1503.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1504 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1504.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1504.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1505 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1505.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1505.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1506 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1506.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1506.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1507 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1507.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1507.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1508 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1508.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1508.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1509 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1509.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1509.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only151 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only151.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only151.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1510 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1510.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1510.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1511 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1511.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1511.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1512 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1512.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1512.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1513 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1513.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1513.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1514 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1514.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1514.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1515 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1515.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1515.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1516 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1516.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1516.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1517 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1517.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1517.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1518 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1518.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1518.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1519 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1519.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1519.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only152 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only152.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only152.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1520 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1520.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1520.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1521 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1521.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1521.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1522 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1522.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1522.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1523 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1523.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1523.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1524 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1524.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1524.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1525 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1525.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1525.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1526 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1526.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1526.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1527 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1527.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1527.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1528 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1528.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1528.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1529 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1529.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1529.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only153 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only153.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only153.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1530 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1530.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1530.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1531 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1531.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1531.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1532 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1532.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1532.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1533 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1533.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1533.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1534 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1534.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1534.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1535 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1535.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1535.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1536 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1536.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1536.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1537 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1537.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1537.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1538 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1538.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1538.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1539 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1539.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1539.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only154 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only154.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only154.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1540 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1540.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1540.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1541 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1541.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1541.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1542 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1542.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1542.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1543 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1543.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1543.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1544 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1544.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1544.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1545 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1545.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1545.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1546 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1546.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1546.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1547 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1547.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1547.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1548 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1548.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1548.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1549 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1549.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1549.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only155 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only155.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only155.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1550 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1550.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1550.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1551 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1551.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1551.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1552 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1552.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1552.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1553 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1553.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1553.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1554 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1554.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1554.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1555 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1555.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1555.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1556 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1556.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1556.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1557 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1557.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1557.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1558 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1558.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1558.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1559 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1559.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1559.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only156 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only156.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only156.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1560 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1560.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1560.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1561 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1561.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1561.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1562 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1562.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1562.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1563 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1563.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1563.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1564 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1564.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1564.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1565 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1565.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1565.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1566 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1566.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1566.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1567 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1567.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1567.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1568 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1568.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1568.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1569 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1569.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1569.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only157 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only157.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only157.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1570 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1570.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1570.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1571 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1571.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1571.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1572 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1572.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1572.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1573 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1573.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1573.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1574 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1574.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1574.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1575 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1575.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1575.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1576 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1576.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1576.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1577 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1577.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1577.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1578 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1578.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1578.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1579 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1579.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1579.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only158 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only158.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only158.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1580 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1580.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1580.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1581 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1581.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1581.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1582 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1582.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1582.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1583 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1583.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1583.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1584 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1584.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1584.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1585 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1585.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1585.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1586 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1586.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1586.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1587 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1587.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1587.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1588 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1588.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1588.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1589 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1589.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1589.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only159 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only159.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only159.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1590 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1590.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1590.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1591 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1591.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1591.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1592 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1592.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1592.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1593 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1593.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1593.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1594 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1594.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1594.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1595 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1595.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1595.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1596 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1596.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1596.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1597 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1597.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1597.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1598 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1598.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1598.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1599 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1599.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1599.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only16 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only16.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only16.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only160 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only160.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only160.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1600 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1600.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1600.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1601 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1601.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1601.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1602 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1602.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1602.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1603 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1603.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1603.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1604 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1604.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1604.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1605 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1605.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1605.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1606 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1606.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1606.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1607 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1607.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1607.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1608 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1608.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1608.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1609 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1609.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1609.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only161 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only161.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only161.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1610 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1610.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1610.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1611 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1611.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1611.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1612 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1612.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1612.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1613 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1613.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1613.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1614 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1614.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1614.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1615 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1615.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1615.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1616 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1616.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1616.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1617 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1617.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1617.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1618 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1618.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1618.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1619 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1619.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1619.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only162 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only162.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only162.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1620 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1620.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1620.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1621 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1621.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1621.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1622 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1622.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1622.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1623 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1623.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1623.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1624 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1624.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1624.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1625 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1625.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1625.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1626 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1626.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1626.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1627 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1627.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1627.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1628 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1628.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1628.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1629 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1629.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1629.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only163 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only163.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only163.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1630 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1630.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1630.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1631 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1631.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1631.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1632 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1632.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1632.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1633 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1633.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1633.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1634 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1634.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1634.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1635 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1635.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1635.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1636 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1636.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1636.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1637 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1637.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1637.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1638 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1638.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1638.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1639 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1639.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1639.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only164 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only164.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only164.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1640 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1640.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1640.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1641 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1641.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1641.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1642 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1642.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1642.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1643 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1643.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1643.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1644 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1644.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1644.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1645 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1645.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1645.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1646 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1646.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1646.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1647 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1647.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1647.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1648 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1648.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1648.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1649 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1649.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1649.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only165 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only165.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only165.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1650 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1650.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1650.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1651 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1651.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1651.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1652 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1652.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1652.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1653 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1653.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1653.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1654 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1654.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1654.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1655 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1655.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1655.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1656 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1656.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1656.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1657 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1657.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1657.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1658 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1658.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1658.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1659 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1659.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1659.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only166 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only166.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only166.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1660 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1660.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1660.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1661 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1661.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1661.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1662 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1662.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1662.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1663 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1663.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1663.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1664 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1664.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1664.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1665 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1665.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1665.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1666 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1666.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1666.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1667 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1667.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1667.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1668 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1668.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1668.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1669 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1669.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1669.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only167 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only167.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only167.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1670 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1670.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1670.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1671 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1671.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1671.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1672 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1672.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1672.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1673 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1673.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1673.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1674 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1674.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1674.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1675 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1675.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1675.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1676 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1676.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1676.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1677 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1677.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1677.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1678 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1678.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1678.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1679 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1679.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1679.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only168 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only168.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only168.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1680 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1680.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1680.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1681 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1681.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1681.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1682 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1682.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1682.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1683 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1683.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1683.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1684 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1684.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1684.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1685 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1685.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1685.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1686 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1686.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1686.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1687 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1687.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1687.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1688 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1688.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1688.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1689 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1689.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1689.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only169 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only169.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only169.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1690 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1690.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1690.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1691 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1691.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1691.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1692 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1692.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1692.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1693 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1693.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1693.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1694 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1694.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1694.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1695 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1695.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1695.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1696 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1696.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1696.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1697 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1697.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1697.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1698 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1698.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1698.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1699 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1699.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1699.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only17 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only17.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only17.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only170 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only170.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only170.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1700 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1700.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1700.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1701 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1701.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1701.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1702 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1702.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1702.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1703 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1703.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1703.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1704 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1704.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1704.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1705 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1705.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1705.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1706 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1706.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1706.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1707 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1707.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1707.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1708 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1708.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1708.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1709 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1709.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1709.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only171 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only171.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only171.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1710 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1710.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1710.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1711 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1711.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1711.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1712 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1712.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1712.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1713 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1713.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1713.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1714 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1714.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1714.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1715 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1715.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1715.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1716 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1716.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1716.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1717 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1717.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1717.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1718 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1718.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1718.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1719 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1719.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1719.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only172 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only172.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only172.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1720 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1720.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1720.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1721 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1721.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1721.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1722 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1722.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1722.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1723 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1723.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1723.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1724 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1724.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1724.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1725 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1725.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1725.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1726 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1726.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1726.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1727 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1727.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1727.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1728 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1728.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1728.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1729 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1729.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1729.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only173 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only173.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only173.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1730 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1730.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1730.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1731 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1731.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1731.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1732 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1732.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1732.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1733 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1733.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1733.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1734 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1734.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1734.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1735 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1735.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1735.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1736 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1736.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1736.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1737 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1737.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1737.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1738 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1738.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1738.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1739 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1739.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1739.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only174 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only174.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only174.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1740 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1740.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1740.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1741 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1741.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1741.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1742 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1742.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1742.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1743 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1743.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1743.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1744 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1744.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1744.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1745 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1745.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1745.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1746 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1746.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1746.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1747 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1747.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1747.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1748 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1748.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1748.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1749 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1749.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1749.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only175 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only175.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only175.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1750 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1750.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1750.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1751 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1751.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1751.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1752 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1752.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1752.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1753 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1753.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1753.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1754 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1754.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1754.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1755 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1755.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1755.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1756 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1756.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1756.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1757 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1757.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1757.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1758 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1758.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1758.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1759 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1759.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1759.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only176 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only176.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only176.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1760 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1760.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1760.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1761 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1761.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1761.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1762 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1762.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1762.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1763 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1763.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1763.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1764 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1764.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1764.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1765 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1765.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1765.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1766 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1766.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1766.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1767 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1767.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1767.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1768 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1768.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1768.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1769 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1769.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1769.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only177 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only177.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only177.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1770 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1770.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1770.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1771 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1771.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1771.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1772 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1772.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1772.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1773 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1773.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1773.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1774 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1774.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1774.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1775 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1775.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1775.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1776 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1776.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1776.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1777 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1777.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1777.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1778 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1778.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1778.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1779 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1779.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1779.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only178 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only178.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only178.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1780 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1780.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1780.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1781 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1781.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1781.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1782 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1782.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1782.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1783 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1783.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1783.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1784 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1784.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1784.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1785 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1785.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1785.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1786 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1786.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1786.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1787 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1787.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1787.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1788 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1788.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1788.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1789 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1789.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1789.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only179 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only179.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only179.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1790 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1790.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1790.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1791 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1791.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1791.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1792 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1792.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1792.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1793 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1793.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1793.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1794 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1794.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1794.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1795 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1795.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1795.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1796 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1796.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1796.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1797 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1797.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1797.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1798 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1798.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1798.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1799 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1799.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1799.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only18 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only18.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only18.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only180 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only180.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only180.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1800 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1800.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1800.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1801 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1801.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1801.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1802 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1802.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1802.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1803 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1803.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1803.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1804 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1804.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1804.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1805 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1805.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1805.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1806 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1806.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1806.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1807 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1807.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1807.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1808 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1808.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1808.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1809 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1809.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1809.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only181 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only181.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only181.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1810 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1810.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1810.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1811 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1811.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1811.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1812 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1812.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1812.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1813 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1813.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1813.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1814 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1814.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1814.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1815 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1815.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1815.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1816 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1816.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1816.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1817 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1817.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1817.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1818 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1818.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1818.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1819 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1819.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1819.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only182 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only182.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only182.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1820 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1820.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1820.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1821 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1821.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1821.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1822 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1822.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1822.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1823 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1823.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1823.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1824 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1824.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1824.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1825 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1825.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1825.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1826 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1826.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1826.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1827 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1827.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1827.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1828 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1828.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1828.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1829 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1829.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1829.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only183 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only183.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only183.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1830 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1830.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1830.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1831 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1831.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1831.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1832 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1832.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1832.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1833 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1833.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1833.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1834 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1834.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1834.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1835 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1835.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1835.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1836 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1836.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1836.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1837 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1837.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1837.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1838 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1838.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1838.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1839 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1839.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1839.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only184 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only184.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only184.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1840 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1840.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1840.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1841 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1841.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1841.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1842 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1842.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1842.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1843 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1843.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1843.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1844 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1844.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1844.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1845 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1845.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1845.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1846 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1846.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1846.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1847 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1847.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1847.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1848 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1848.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1848.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1849 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1849.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1849.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only185 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only185.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only185.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1850 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1850.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1850.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1851 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1851.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1851.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1852 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1852.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1852.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1853 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1853.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1853.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1854 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1854.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1854.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1855 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1855.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1855.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1856 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1856.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1856.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1857 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1857.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1857.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1858 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1858.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1858.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1859 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1859.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1859.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only186 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only186.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only186.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1860 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1860.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1860.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1861 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1861.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1861.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1862 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1862.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1862.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1863 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1863.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1863.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1864 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1864.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1864.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1865 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1865.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1865.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1866 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1866.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1866.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1867 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1867.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1867.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1868 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1868.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1868.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1869 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1869.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1869.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only187 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only187.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only187.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1870 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1870.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1870.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1871 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1871.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1871.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1872 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1872.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1872.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1873 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1873.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1873.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1874 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1874.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1874.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1875 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1875.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1875.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1876 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1876.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1876.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1877 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1877.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1877.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1878 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1878.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1878.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1879 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1879.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1879.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only188 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only188.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only188.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1880 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1880.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1880.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1881 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1881.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1881.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1882 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1882.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1882.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1883 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1883.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1883.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1884 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1884.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1884.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1885 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1885.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1885.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1886 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1886.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1886.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1887 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1887.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1887.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1888 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1888.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1888.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1889 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1889.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1889.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only189 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only189.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only189.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1890 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1890.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1890.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1891 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1891.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1891.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1892 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1892.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1892.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1893 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1893.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1893.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1894 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1894.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1894.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1895 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1895.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1895.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1896 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1896.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1896.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1897 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1897.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1897.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1898 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1898.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1898.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1899 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1899.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1899.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only19 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only19.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only19.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only190 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only190.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only190.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1900 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1900.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1900.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1901 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1901.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1901.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1902 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1902.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1902.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1903 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1903.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1903.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1904 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1904.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1904.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1905 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1905.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1905.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1906 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1906.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1906.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1907 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1907.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1907.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1908 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1908.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1908.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1909 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1909.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1909.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only191 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only191.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only191.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1910 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1910.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1910.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1911 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1911.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1911.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1912 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1912.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1912.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1913 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1913.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1913.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1914 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1914.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1914.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1915 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1915.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1915.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1916 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1916.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1916.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1917 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1917.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1917.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1918 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1918.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1918.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1919 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1919.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1919.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only192 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only192.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only192.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1920 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1920.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1920.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1921 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1921.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1921.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1922 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1922.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1922.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1923 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1923.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1923.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1924 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1924.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1924.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1925 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1925.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1925.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1926 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1926.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1926.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1927 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1927.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1927.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1928 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1928.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1928.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1929 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1929.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1929.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only193 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only193.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only193.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1930 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1930.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1930.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1931 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1931.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1931.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1932 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1932.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1932.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1933 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1933.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1933.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1934 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1934.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1934.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1935 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1935.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1935.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1936 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1936.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1936.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1937 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1937.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1937.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1938 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1938.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1938.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1939 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1939.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1939.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only194 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only194.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only194.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1940 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1940.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1940.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1941 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1941.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1941.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1942 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1942.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1942.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1943 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1943.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1943.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1944 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1944.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1944.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1945 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1945.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1945.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1946 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1946.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1946.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1947 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1947.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1947.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1948 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1948.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1948.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1949 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1949.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1949.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only195 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only195.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only195.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1950 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1950.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1950.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1951 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1951.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1951.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1952 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1952.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1952.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1953 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1953.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1953.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1954 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1954.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1954.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1955 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1955.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1955.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1956 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1956.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1956.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1957 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1957.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1957.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1958 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1958.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1958.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1959 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1959.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1959.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only196 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only196.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only196.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1960 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1960.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1960.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1961 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1961.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1961.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1962 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1962.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1962.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1963 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1963.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1963.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1964 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1964.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1964.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1965 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1965.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1965.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1966 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1966.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1966.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1967 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1967.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1967.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1968 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1968.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1968.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1969 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1969.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1969.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only197 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only197.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only197.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1970 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1970.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1970.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1971 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1971.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1971.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1972 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1972.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1972.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1973 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1973.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1973.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1974 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1974.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1974.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1975 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1975.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1975.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1976 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1976.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1976.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1977 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1977.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1977.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1978 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1978.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1978.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1979 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1979.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1979.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only198 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only198.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only198.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1980 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1980.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1980.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1981 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1981.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1981.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1982 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1982.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1982.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1983 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1983.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1983.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1984 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1984.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1984.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1985 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1985.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1985.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1986 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1986.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1986.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1987 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1987.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1987.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1988 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1988.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1988.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1989 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1989.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1989.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only199 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only199.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only199.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1990 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1990.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1990.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1991 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1991.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1991.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1992 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1992.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1992.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1993 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1993.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1993.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1994 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1994.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1994.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1995 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1995.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1995.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1996 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1996.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1996.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1997 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1997.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1997.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1998 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1998.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1998.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1999 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1999.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only1999.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only20 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only20.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only20.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only200 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only200.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only200.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2000 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2000.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2000.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2001 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2001.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2001.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2002 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2002.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2002.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2003 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2003.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2003.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2004 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2004.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2004.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2005 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2005.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2005.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2006 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2006.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2006.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2007 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2007.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2007.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2008 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2008.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2008.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2009 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2009.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2009.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only201 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only201.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only201.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2010 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2010.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2010.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2011 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2011.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2011.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2012 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2012.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2012.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2013 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2013.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2013.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2014 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2014.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2014.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2015 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2015.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2015.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2016 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2016.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2016.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2017 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2017.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2017.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2018 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2018.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2018.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2019 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2019.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2019.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only202 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only202.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only202.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2020 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2020.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2020.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2021 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2021.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2021.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2022 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2022.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2022.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2023 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2023.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2023.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2024 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2024.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2024.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2025 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2025.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2025.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2026 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2026.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2026.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2027 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2027.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2027.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2028 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2028.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2028.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2029 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2029.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2029.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only203 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only203.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only203.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2030 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2030.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2030.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2031 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2031.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2031.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2032 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2032.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2032.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2033 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2033.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2033.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2034 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2034.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2034.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2035 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2035.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2035.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2036 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2036.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2036.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2037 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2037.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2037.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2038 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2038.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2038.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2039 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2039.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2039.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only204 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only204.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only204.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2040 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2040.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2040.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2041 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2041.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2041.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2042 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2042.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2042.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2043 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2043.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2043.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2044 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2044.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2044.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2045 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2045.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2045.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2046 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2046.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2046.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2047 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2047.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2047.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2048 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2048.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2048.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2049 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2049.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2049.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only205 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only205.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only205.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2050 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2050.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2050.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2051 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2051.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2051.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2052 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2052.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2052.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2053 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2053.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2053.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2054 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2054.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2054.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2055 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2055.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2055.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2056 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2056.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2056.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2057 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2057.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2057.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2058 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2058.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2058.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2059 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2059.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2059.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only206 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only206.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only206.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2060 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2060.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2060.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2061 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2061.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2061.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2062 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2062.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2062.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2063 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2063.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2063.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2064 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2064.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2064.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2065 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2065.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2065.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2066 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2066.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2066.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2067 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2067.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2067.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2068 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2068.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2068.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2069 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2069.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2069.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only207 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only207.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only207.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2070 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2070.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2070.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2071 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2071.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2071.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2072 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2072.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2072.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2073 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2073.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2073.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2074 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2074.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2074.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2075 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2075.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2075.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2076 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2076.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2076.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2077 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2077.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2077.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2078 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2078.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2078.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2079 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2079.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2079.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only208 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only208.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only208.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2080 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2080.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2080.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2081 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2081.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2081.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2082 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2082.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2082.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2083 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2083.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2083.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2084 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2084.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2084.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2085 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2085.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2085.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2086 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2086.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2086.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2087 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2087.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2087.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2088 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2088.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2088.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2089 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2089.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2089.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only209 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only209.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only209.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2090 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2090.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2090.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2091 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2091.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2091.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2092 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2092.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2092.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2093 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2093.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2093.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2094 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2094.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2094.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2095 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2095.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2095.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2096 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2096.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2096.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2097 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2097.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2097.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2098 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2098.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2098.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2099 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2099.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2099.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only21 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only21.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only21.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only210 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only210.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only210.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2100 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2100.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2100.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2101 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2101.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2101.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2102 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2102.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2102.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2103 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2103.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2103.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2104 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2104.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2104.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2105 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2105.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2105.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2106 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2106.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2106.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2107 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2107.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2107.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2108 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2108.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2108.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2109 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2109.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2109.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only211 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only211.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only211.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2110 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2110.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2110.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2111 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2111.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2111.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2112 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2112.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2112.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2113 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2113.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2113.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2114 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2114.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2114.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2115 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2115.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2115.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2116 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2116.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2116.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2117 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2117.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2117.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2118 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2118.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2118.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2119 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2119.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2119.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only212 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only212.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only212.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2120 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2120.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2120.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2121 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2121.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2121.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2122 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2122.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2122.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2123 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2123.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2123.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2124 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2124.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2124.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2125 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2125.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2125.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2126 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2126.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2126.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2127 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2127.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2127.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2128 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2128.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2128.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2129 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2129.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2129.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only213 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only213.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only213.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2130 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2130.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2130.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2131 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2131.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2131.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2132 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2132.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2132.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2133 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2133.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2133.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2134 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2134.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2134.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2135 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2135.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2135.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2136 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2136.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2136.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2137 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2137.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2137.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2138 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2138.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2138.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2139 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2139.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2139.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only214 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only214.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only214.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2140 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2140.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2140.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2141 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2141.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2141.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2142 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2142.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only2142.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only215 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only215.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only215.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only216 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only216.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only216.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only217 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only217.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only217.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only218 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only218.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only218.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only219 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only219.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only219.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only22 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only22.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only22.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only220 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only220.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only220.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only221 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only221.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only221.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only222 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only222.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only222.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only223 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only223.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only223.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only224 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only224.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only224.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only225 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only225.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only225.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only226 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only226.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only226.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only227 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only227.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only227.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only228 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only228.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only228.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only229 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only229.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only229.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only23 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only23.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only23.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only230 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only230.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only230.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only231 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only231.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only231.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only232 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only232.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only232.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only233 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only233.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only233.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only234 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only234.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only234.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only235 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only235.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only235.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only236 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only236.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only236.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only237 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only237.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only237.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only238 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only238.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only238.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only239 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only239.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only239.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only24 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only24.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only24.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only240 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only240.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only240.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only241 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only241.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only241.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only242 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only242.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only242.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only243 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only243.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only243.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only244 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only244.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only244.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only245 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only245.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only245.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only246 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only246.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only246.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only247 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only247.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only247.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only248 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only248.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only248.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only249 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only249.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only249.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only25 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only25.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only25.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only250 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only250.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only250.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only251 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only251.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only251.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only252 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only252.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only252.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only253 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only253.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only253.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only254 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only254.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only254.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only255 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only255.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only255.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only256 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only256.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only256.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only257 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only257.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only257.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only258 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only258.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only258.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only259 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only259.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only259.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only26 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only26.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only26.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only260 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only260.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only260.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only261 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only261.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only261.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only262 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only262.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only262.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only263 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only263.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only263.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only264 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only264.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only264.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only265 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only265.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only265.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only266 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only266.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only266.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only267 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only267.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only267.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only268 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only268.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only268.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only269 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only269.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only269.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only27 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only27.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only27.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only270 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only270.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only270.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only271 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only271.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only271.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only272 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only272.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only272.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only273 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only273.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only273.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only274 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only274.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only274.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only275 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only275.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only275.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only276 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only276.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only276.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only277 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only277.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only277.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only278 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only278.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only278.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only279 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only279.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only279.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only28 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only28.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only28.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only280 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only280.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only280.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only281 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only281.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only281.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only282 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only282.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only282.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only283 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only283.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only283.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only284 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only284.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only284.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only285 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only285.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only285.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only286 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only286.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only286.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only287 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only287.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only287.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only288 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only288.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only288.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only289 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only289.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only289.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only29 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only29.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only29.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only290 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only290.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only290.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only291 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only291.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only291.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only292 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only292.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only292.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only293 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only293.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only293.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only294 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only294.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only294.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only295 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only295.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only295.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only296 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only296.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only296.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only297 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only297.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only297.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only298 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only298.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only298.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only299 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only299.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only299.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only3 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only3.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only30 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only30.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only30.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only300 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only300.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only300.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only301 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only301.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only301.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only302 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only302.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only302.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only303 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only303.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only303.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only304 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only304.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only304.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only305 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only305.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only305.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only306 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only306.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only306.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only307 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only307.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only307.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only308 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only308.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only308.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only309 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only309.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only309.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only31 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only31.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only31.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only310 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only310.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only310.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only311 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only311.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only311.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only312 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only312.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only312.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only313 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only313.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only313.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only314 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only314.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only314.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only315 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only315.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only315.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only316 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only316.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only316.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only317 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only317.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only317.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only318 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only318.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only318.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only319 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only319.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only319.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only32 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only32.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only32.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only320 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only320.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only320.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only321 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only321.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only321.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only322 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only322.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only322.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only323 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only323.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only323.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only324 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only324.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only324.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only325 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only325.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only325.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only326 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only326.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only326.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only327 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only327.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only327.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only328 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only328.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only328.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only329 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only329.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only329.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only33 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only33.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only33.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only330 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only330.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only330.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only331 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only331.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only331.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only332 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only332.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only332.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only333 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only333.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only333.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only334 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only334.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only334.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only335 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only335.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only335.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only336 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only336.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only336.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only337 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only337.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only337.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only338 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only338.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only338.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only339 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only339.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only339.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only34 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only34.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only34.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only340 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only340.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only340.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only341 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only341.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only341.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only342 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only342.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only342.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only343 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only343.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only343.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only344 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only344.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only344.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only345 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only345.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only345.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only346 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only346.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only346.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only347 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only347.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only347.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only348 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only348.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only348.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only349 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only349.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only349.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only35 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only35.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only35.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only350 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only350.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only350.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only351 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only351.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only351.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only352 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only352.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only352.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only353 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only353.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only353.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only354 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only354.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only354.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only355 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only355.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only355.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only356 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only356.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only356.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only357 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only357.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only357.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only358 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only358.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only358.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only359 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only359.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only359.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only36 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only36.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only36.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only360 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only360.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only360.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only361 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only361.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only361.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only362 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only362.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only362.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only363 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only363.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only363.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only364 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only364.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only364.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only365 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only365.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only365.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only366 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only366.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only366.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only367 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only367.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only367.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only368 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only368.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only368.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only369 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only369.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only369.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only37 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only37.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only37.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only370 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only370.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only370.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only371 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only371.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only371.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only372 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only372.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only372.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only373 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only373.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only373.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only374 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only374.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only374.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only375 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only375.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only375.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only376 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only376.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only376.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only377 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only377.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only377.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only378 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only378.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only378.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only379 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only379.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only379.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only38 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only38.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only38.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only380 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only380.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only380.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only381 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only381.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only381.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only382 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only382.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only382.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only383 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only383.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only383.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only384 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only384.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only384.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only385 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only385.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only385.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only386 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only386.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only386.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only387 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only387.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only387.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only388 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only388.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only388.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only389 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only389.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only389.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only39 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only39.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only39.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only390 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only390.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only390.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only391 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only391.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only391.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only392 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only392.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only392.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only393 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only393.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only393.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only394 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only394.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only394.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only395 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only395.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only395.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only396 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only396.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only396.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only397 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only397.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only397.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only398 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only398.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only398.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only399 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only399.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only399.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only4 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only4.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only40 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only40.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only40.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only400 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only400.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only400.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only401 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only401.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only401.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only402 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only402.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only402.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only403 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only403.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only403.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only404 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only404.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only404.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only405 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only405.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only405.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only406 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only406.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only406.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only407 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only407.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only407.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only408 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only408.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only408.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only409 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only409.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only409.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only41 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only41.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only41.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only410 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only410.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only410.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only411 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only411.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only411.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only412 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only412.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only412.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only413 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only413.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only413.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only414 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only414.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only414.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only415 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only415.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only415.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only416 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only416.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only416.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only417 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only417.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only417.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only418 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only418.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only418.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only419 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only419.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only419.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only42 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only42.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only42.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only420 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only420.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only420.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only421 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only421.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only421.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only422 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only422.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only422.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only423 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only423.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only423.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only424 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only424.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only424.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only425 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only425.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only425.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only426 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only426.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only426.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only427 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only427.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only427.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only428 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only428.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only428.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only429 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only429.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only429.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only43 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only43.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only43.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only430 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only430.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only430.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only431 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only431.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only431.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only432 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only432.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only432.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only433 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only433.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only433.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only434 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only434.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only434.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only435 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only435.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only435.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only436 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only436.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only436.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only437 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only437.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only437.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only438 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only438.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only438.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only439 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only439.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only439.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only44 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only44.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only44.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only440 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only440.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only440.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only441 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only441.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only441.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only442 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only442.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only442.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only443 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only443.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only443.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only444 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only444.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only444.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only445 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only445.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only445.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only446 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only446.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only446.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only447 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only447.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only447.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only448 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only448.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only448.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only449 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only449.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only449.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only45 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only45.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only45.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only450 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only450.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only450.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only451 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only451.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only451.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only452 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only452.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only452.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only453 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only453.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only453.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only454 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only454.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only454.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only455 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only455.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only455.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only456 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only456.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only456.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only457 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only457.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only457.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only458 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only458.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only458.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only459 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only459.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only459.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only46 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only46.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only46.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only460 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only460.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only460.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only461 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only461.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only461.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only462 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only462.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only462.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only463 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only463.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only463.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only464 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only464.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only464.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only465 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only465.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only465.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only466 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only466.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only466.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only467 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only467.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only467.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only468 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only468.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only468.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only469 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only469.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only469.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only47 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only47.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only47.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only470 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only470.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only470.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only471 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only471.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only471.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only472 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only472.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only472.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only473 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only473.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only473.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only474 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only474.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only474.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only475 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only475.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only475.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only476 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only476.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only476.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only477 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only477.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only477.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only478 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only478.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only478.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only479 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only479.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only479.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only48 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only48.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only48.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only480 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only480.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only480.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only481 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only481.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only481.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only482 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only482.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only482.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only483 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only483.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only483.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only484 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only484.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only484.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only485 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only485.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only485.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only486 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only486.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only486.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only487 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only487.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only487.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only488 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only488.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only488.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only489 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only489.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only489.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only49 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only49.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only49.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only490 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only490.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only490.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only491 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only491.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only491.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only492 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only492.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only492.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only493 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only493.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only493.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only494 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only494.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only494.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only495 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only495.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only495.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only496 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only496.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only496.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only497 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only497.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only497.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only498 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only498.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only498.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only499 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only499.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only499.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only5 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only5.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only50 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only50.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only50.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only500 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only500.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only500.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only501 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only501.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only501.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only502 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only502.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only502.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only503 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only503.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only503.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only504 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only504.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only504.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only505 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only505.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only505.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only506 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only506.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only506.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only507 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only507.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only507.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only508 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only508.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only508.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only509 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only509.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only509.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only51 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only51.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only51.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only510 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only510.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only510.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only511 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only511.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only511.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only512 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only512.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only512.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only513 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only513.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only513.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only514 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only514.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only514.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only515 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only515.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only515.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only516 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only516.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only516.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only517 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only517.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only517.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only518 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only518.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only518.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only519 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only519.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only519.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only52 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only52.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only52.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only520 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only520.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only520.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only521 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only521.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only521.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only522 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only522.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only522.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only523 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only523.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only523.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only524 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only524.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only524.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only525 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only525.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only525.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only526 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only526.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only526.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only527 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only527.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only527.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only528 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only528.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only528.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only529 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only529.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only529.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only53 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only53.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only53.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only530 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only530.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only530.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only531 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only531.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only531.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only532 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only532.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only532.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only533 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only533.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only533.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only534 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only534.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only534.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only535 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only535.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only535.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only536 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only536.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only536.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only537 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only537.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only537.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only538 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only538.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only538.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only539 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only539.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only539.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only54 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only54.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only54.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only540 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only540.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only540.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only541 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only541.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only541.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only542 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only542.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only542.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only543 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only543.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only543.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only544 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only544.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only544.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only545 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only545.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only545.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only546 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only546.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only546.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only547 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only547.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only547.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only548 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only548.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only548.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only549 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only549.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only549.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only55 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only55.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only55.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only550 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only550.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only550.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only551 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only551.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only551.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only552 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only552.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only552.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only553 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only553.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only553.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only554 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only554.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only554.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only555 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only555.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only555.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only556 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only556.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only556.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only557 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only557.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only557.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only558 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only558.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only558.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only559 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only559.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only559.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only56 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only56.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only56.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only560 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only560.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only560.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only561 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only561.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only561.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only562 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only562.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only562.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only563 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only563.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only563.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only564 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only564.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only564.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only565 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only565.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only565.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only566 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only566.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only566.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only567 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only567.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only567.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only568 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only568.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only568.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only569 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only569.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only569.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only57 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only57.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only57.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only570 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only570.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only570.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only571 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only571.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only571.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only572 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only572.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only572.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only573 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only573.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only573.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only574 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only574.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only574.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only575 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only575.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only575.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only576 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only576.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only576.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only577 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only577.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only577.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only578 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only578.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only578.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only579 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only579.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only579.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only58 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only58.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only58.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only580 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only580.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only580.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only581 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only581.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only581.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only582 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only582.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only582.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only583 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only583.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only583.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only584 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only584.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only584.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only585 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only585.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only585.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only586 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only586.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only586.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only587 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only587.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only587.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only588 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only588.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only588.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only589 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only589.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only589.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only59 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only59.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only59.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only590 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only590.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only590.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only591 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only591.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only591.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only592 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only592.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only592.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only593 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only593.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only593.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only594 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only594.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only594.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only595 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only595.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only595.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only596 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only596.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only596.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only597 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only597.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only597.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only598 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only598.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only598.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only599 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only599.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only599.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only6 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only6.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only6.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only60 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only60.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only60.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only600 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only600.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only600.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only601 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only601.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only601.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only602 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only602.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only602.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only603 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only603.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only603.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only604 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only604.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only604.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only605 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only605.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only605.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only606 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only606.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only606.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only607 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only607.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only607.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only608 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only608.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only608.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only609 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only609.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only609.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only61 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only61.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only61.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only610 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only610.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only610.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only611 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only611.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only611.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only612 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only612.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only612.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only613 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only613.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only613.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only614 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only614.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only614.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only615 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only615.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only615.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only616 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only616.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only616.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only617 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only617.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only617.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only618 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only618.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only618.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only619 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only619.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only619.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only62 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only62.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only62.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only620 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only620.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only620.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only621 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only621.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only621.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only622 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only622.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only622.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only623 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only623.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only623.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only624 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only624.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only624.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only625 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only625.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only625.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only626 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only626.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only626.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only627 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only627.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only627.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only628 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only628.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only628.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only629 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only629.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only629.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only63 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only63.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only63.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only630 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only630.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only630.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only631 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only631.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only631.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only632 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only632.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only632.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only633 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only633.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only633.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only634 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only634.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only634.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only635 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only635.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only635.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only636 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only636.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only636.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only637 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only637.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only637.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only638 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only638.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only638.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only639 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only639.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only639.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only64 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only64.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only64.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only640 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only640.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only640.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only641 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only641.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only641.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only642 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only642.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only642.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only643 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only643.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only643.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only644 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only644.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only644.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only645 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only645.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only645.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only646 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only646.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only646.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only647 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only647.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only647.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only648 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only648.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only648.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only649 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only649.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only649.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only65 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only65.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only65.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only650 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only650.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only650.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only651 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only651.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only651.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only652 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only652.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only652.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only653 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only653.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only653.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only654 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only654.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only654.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only655 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only655.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only655.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only656 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only656.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only656.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only657 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only657.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only657.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only658 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only658.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only658.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only659 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only659.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only659.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only66 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only66.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only66.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only660 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only660.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only660.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only661 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only661.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only661.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only662 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only662.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only662.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only663 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only663.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only663.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only664 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only664.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only664.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only665 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only665.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only665.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only666 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only666.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only666.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only667 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only667.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only667.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only668 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only668.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only668.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only669 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only669.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only669.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only67 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only67.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only67.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only670 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only670.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only670.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only671 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only671.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only671.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only672 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only672.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only672.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only673 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only673.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only673.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only674 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only674.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only674.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only675 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only675.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only675.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only676 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only676.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only676.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only677 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only677.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only677.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only678 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only678.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only678.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only679 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only679.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only679.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only68 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only68.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only68.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only680 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only680.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only680.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only681 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only681.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only681.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only682 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only682.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only682.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only683 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only683.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only683.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only684 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only684.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only684.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only685 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only685.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only685.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only686 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only686.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only686.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only687 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only687.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only687.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only688 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only688.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only688.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only689 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only689.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only689.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only69 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only69.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only69.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only690 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only690.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only690.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only691 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only691.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only691.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only692 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only692.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only692.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only693 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only693.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only693.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only694 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only694.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only694.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only695 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only695.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only695.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only696 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only696.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only696.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only697 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only697.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only697.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only698 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only698.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only698.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only699 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only699.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only699.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only7 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only7.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only7.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only70 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only70.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only70.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only700 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only700.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only700.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only701 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only701.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only701.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only702 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only702.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only702.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only703 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only703.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only703.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only704 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only704.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only704.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only705 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only705.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only705.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only706 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only706.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only706.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only707 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only707.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only707.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only708 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only708.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only708.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only709 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only709.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only709.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only71 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only71.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only71.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only710 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only710.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only710.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only711 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only711.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only711.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only712 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only712.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only712.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only713 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only713.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only713.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only714 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only714.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only714.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only715 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only715.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only715.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only716 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only716.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only716.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only717 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only717.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only717.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only718 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only718.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only718.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only719 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only719.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only719.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only72 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only72.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only72.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only720 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only720.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only720.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only721 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only721.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only721.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only722 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only722.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only722.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only723 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only723.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only723.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only724 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only724.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only724.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only725 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only725.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only725.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only726 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only726.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only726.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only727 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only727.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only727.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only728 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only728.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only728.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only729 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only729.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only729.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only73 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only73.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only73.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only730 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only730.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only730.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only731 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only731.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only731.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only732 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only732.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only732.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only733 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only733.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only733.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only734 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only734.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only734.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only735 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only735.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only735.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only736 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only736.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only736.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only737 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only737.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only737.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only738 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only738.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only738.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only739 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only739.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only739.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only74 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only74.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only74.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only740 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only740.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only740.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only741 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only741.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only741.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only742 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only742.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only742.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only743 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only743.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only743.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only744 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only744.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only744.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only745 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only745.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only745.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only746 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only746.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only746.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only747 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only747.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only747.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only748 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only748.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only748.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only749 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only749.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only749.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only75 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only75.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only75.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only750 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only750.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only750.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only751 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only751.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only751.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only752 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only752.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only752.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only753 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only753.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only753.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only754 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only754.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only754.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only755 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only755.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only755.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only756 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only756.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only756.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only757 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only757.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only757.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only758 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only758.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only758.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only759 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only759.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only759.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only76 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only76.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only76.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only760 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only760.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only760.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only761 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only761.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only761.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only762 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only762.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only762.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only763 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only763.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only763.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only764 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only764.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only764.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only765 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only765.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only765.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only766 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only766.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only766.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only767 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only767.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only767.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only768 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only768.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only768.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only769 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only769.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only769.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only77 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only77.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only77.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only770 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only770.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only770.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only771 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only771.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only771.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only772 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only772.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only772.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only773 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only773.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only773.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only774 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only774.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only774.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only775 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only775.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only775.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only776 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only776.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only776.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only777 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only777.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only777.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only778 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only778.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only778.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only779 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only779.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only779.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only78 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only78.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only78.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only780 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only780.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only780.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only781 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only781.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only781.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only782 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only782.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only782.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only783 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only783.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only783.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only784 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only784.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only784.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only785 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only785.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only785.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only786 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only786.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only786.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only787 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only787.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only787.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only788 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only788.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only788.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only789 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only789.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only789.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only79 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only79.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only79.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only790 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only790.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only790.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only791 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only791.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only791.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only792 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only792.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only792.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only793 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only793.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only793.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only794 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only794.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only794.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only795 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only795.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only795.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only796 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only796.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only796.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only797 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only797.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only797.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only798 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only798.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only798.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only799 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only799.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only799.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only8 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only8.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only8.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only80 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only80.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only80.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only800 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only800.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only800.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only801 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only801.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only801.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only802 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only802.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only802.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only803 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only803.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only803.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only804 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only804.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only804.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only805 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only805.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only805.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only806 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only806.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only806.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only807 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only807.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only807.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only808 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only808.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only808.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only809 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only809.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only809.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only81 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only81.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only81.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only810 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only810.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only810.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only811 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only811.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only811.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only812 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only812.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only812.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only813 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only813.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only813.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only814 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only814.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only814.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only815 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only815.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only815.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only816 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only816.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only816.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only817 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only817.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only817.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only818 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only818.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only818.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only819 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only819.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only819.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only82 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only82.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only82.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only820 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only820.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only820.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only821 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only821.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only821.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only822 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only822.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only822.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only823 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only823.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only823.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only824 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only824.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only824.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only825 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only825.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only825.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only826 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only826.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only826.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only827 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only827.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only827.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only828 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only828.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only828.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only829 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only829.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only829.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only83 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only83.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only83.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only830 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only830.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only830.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only831 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only831.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only831.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only832 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only832.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only832.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only833 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only833.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only833.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only834 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only834.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only834.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only835 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only835.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only835.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only836 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only836.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only836.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only837 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only837.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only837.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only838 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only838.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only838.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only839 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only839.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only839.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only84 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only84.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only84.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only840 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only840.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only840.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only841 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only841.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only841.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only842 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only842.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only842.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only843 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only843.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only843.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only844 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only844.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only844.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only845 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only845.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only845.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only846 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only846.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only846.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only847 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only847.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only847.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only848 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only848.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only848.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only849 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only849.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only849.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only85 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only85.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only85.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only850 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only850.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only850.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only851 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only851.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only851.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only852 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only852.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only852.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only853 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only853.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only853.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only854 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only854.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only854.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only855 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only855.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only855.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only856 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only856.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only856.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only857 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only857.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only857.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only858 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only858.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only858.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only859 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only859.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only859.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only86 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only86.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only86.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only860 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only860.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only860.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only861 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only861.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only861.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only862 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only862.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only862.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only863 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only863.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only863.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only864 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only864.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only864.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only865 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only865.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only865.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only866 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only866.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only866.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only867 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only867.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only867.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only868 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only868.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only868.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only869 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only869.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only869.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only87 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only87.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only87.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only870 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only870.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only870.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only871 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only871.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only871.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only872 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only872.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only872.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only873 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only873.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only873.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only874 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only874.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only874.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only875 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only875.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only875.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only876 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only876.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only876.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only877 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only877.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only877.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only878 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only878.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only878.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only879 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only879.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only879.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only88 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only88.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only88.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only880 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only880.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only880.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only881 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only881.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only881.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only882 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only882.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only882.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only883 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only883.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only883.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only884 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only884.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only884.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only885 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only885.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only885.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only886 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only886.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only886.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only887 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only887.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only887.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only888 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only888.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only888.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only889 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only889.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only889.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only89 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only89.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only89.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only890 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only890.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only890.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only891 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only891.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only891.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only892 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only892.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only892.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only893 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only893.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only893.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only894 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only894.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only894.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only895 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only895.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only895.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only896 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only896.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only896.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only897 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only897.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only897.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only898 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only898.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only898.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only899 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only899.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only899.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only9 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only9.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only9.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only90 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only90.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only90.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only900 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only900.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only900.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only901 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only901.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only901.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only902 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only902.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only902.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only903 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only903.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only903.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only904 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only904.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only904.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only905 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only905.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only905.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only906 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only906.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only906.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only907 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only907.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only907.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only908 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only908.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only908.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only909 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only909.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only909.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only91 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only91.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only91.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only910 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only910.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only910.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only911 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only911.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only911.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only912 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only912.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only912.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only913 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only913.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only913.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only914 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only914.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only914.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only915 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only915.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only915.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only916 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only916.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only916.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only917 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only917.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only917.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only918 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only918.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only918.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only919 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only919.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only919.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only92 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only92.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only92.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only920 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only920.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only920.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only921 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only921.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only921.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only922 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only922.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only922.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only923 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only923.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only923.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only924 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only924.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only924.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only925 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only925.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only925.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only926 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only926.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only926.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only927 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only927.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only927.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only928 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only928.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only928.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only929 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only929.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only929.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only93 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only93.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only93.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only930 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only930.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only930.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only931 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only931.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only931.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only932 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only932.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only932.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only933 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only933.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only933.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only934 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only934.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only934.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only935 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only935.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only935.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only936 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only936.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only936.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only937 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only937.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only937.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only938 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only938.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only938.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only939 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only939.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only939.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only94 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only94.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only94.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only940 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only940.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only940.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only941 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only941.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only941.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only942 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only942.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only942.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only943 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only943.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only943.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only944 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only944.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only944.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only945 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only945.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only945.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only946 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only946.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only946.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only947 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only947.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only947.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only948 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only948.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only948.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only949 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only949.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only949.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only95 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only95.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only95.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only950 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only950.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only950.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only951 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only951.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only951.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only952 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only952.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only952.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only953 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only953.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only953.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only954 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only954.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only954.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only955 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only955.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only955.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only956 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only956.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only956.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only957 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only957.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only957.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only958 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only958.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only958.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only959 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only959.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only959.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only96 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only96.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only96.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only960 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only960.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only960.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only961 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only961.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only961.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only962 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only962.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only962.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only963 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only963.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only963.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only964 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only964.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only964.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only965 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only965.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only965.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only966 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only966.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only966.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only967 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only967.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only967.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only968 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only968.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only968.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only969 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only969.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only969.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only97 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only97.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only97.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only970 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only970.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only970.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only971 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only971.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only971.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only972 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only972.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only972.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only973 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only973.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only973.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only974 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only974.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only974.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only975 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only975.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only975.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only976 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only976.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only976.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only977 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only977.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only977.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only978 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only978.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only978.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only979 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only979.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only979.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only98 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only98.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only98.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only980 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only980.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only980.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only981 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only981.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only981.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only982 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only982.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only982.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only983 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only983.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only983.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only984 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only984.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only984.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only985 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only985.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only985.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only986 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only986.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only986.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only987 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only987.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only987.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only988 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only988.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only988.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only989 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only989.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only989.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only99 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only99.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only99.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only990 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only990.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only990.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only991 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only991.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only991.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only992 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only992.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only992.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only993 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only993.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only993.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only994 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only994.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only994.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only995 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only995.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only995.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only996 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only996.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only996.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only997 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only997.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only997.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only998 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only998.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only998.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only999 0.5 pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only999.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_03_03-sacCer3-rDNA_147-SMAC.m6A-GC-CG-only999.BI_w10_a10_b10.reads.tsv