python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.all0 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.all0.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.all1 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.all1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.all1.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.all2 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.all2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.all2.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.all3 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.all3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.all3.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.all4 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.all4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.all4.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.all5 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.all5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.all5.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.CG-only0 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.CG-only0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.CG-only0.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.CG-only1 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.CG-only1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.CG-only1.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.CG-only2 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.CG-only2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.CG-only2.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.CG-only3 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.CG-only3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.CG-only3.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.CG-only4 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.CG-only4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.CG-only4.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.CG-only5 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.CG-only5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.CG-only5.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.GC-only0 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.GC-only0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.GC-only0.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.GC-only1 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.GC-only1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.GC-only1.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.GC-only2 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.GC-only2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.GC-only2.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.GC-only3 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.GC-only3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.GC-only3.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.GC-only4 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.GC-only4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.GC-only4.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.GC-only5 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.GC-only5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.GC-only5.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.m6A-only0 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.m6A-only0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.m6A-only0.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.m6A-only1 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.m6A-only1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.m6A-only1.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.m6A-only2 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.m6A-only2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.m6A-only2.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.m6A-only3 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.m6A-only3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.m6A-only3.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.m6A-only4 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.m6A-only4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.m6A-only4.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.m6A-only5 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.m6A-only5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.m6A-only5.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.T-only0 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.T-only0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.T-only0.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.T-only1 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.T-only1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.T-only1.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.T-only2 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.T-only2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.T-only2.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.T-only3 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.T-only3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.T-only3.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.T-only4 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.T-only4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.T-only4.BI_w10_a10_b10.reads.tsv
python ~/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.T-only5 0.5 pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.T-only5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_16_60min_Diamide_Lithu_TaqI_Methyl.T-only5.BI_w10_a10_b10.reads.tsv