python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py WT_Asynchronous_23C_Nucleosomes-GSM424491/GSM424491.36mers.a.bam SAMstats-WT_Asynchronous_23C_Nucleosomes-GSM424491 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py WT_G1_37C_Nucleosomes-GSM442537/GSM442537.36mers.a.bam SAMstats-WT_G1_37C_Nucleosomes-GSM442537 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py WT_G2_37C_Nucleosomes_rep1-2-GSM424492/GSM424492.36mers.a.bam SAMstats-WT_G2_37C_Nucleosomes_rep1-2-GSM424492 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py WT_G2_ORC_rep1-2-GSM424494/GSM424494.36mers.a.bam SAMstats-WT_G2_ORC_rep1-2-GSM424494 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired 
python ~/code/makewigglefromBAM-NH.py --- WT_Asynchronous_23C_Nucleosomes-GSM424491/GSM424491.36mers.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes WT_Asynchronous_23C_Nucleosomes-GSM424491/GSM424491.36mers.a.wig -notitle -RPM 
python ~/code/makewigglefromBAM-NH.py --- WT_G1_37C_Nucleosomes-GSM442537/GSM442537.36mers.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes WT_G1_37C_Nucleosomes-GSM442537/GSM442537.36mers.a.wig -notitle -RPM 
python ~/code/makewigglefromBAM-NH.py --- WT_G2_37C_Nucleosomes_rep1-2-GSM424492/GSM424492.36mers.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes WT_G2_37C_Nucleosomes_rep1-2-GSM424492/GSM424492.36mers.a.wig -notitle -RPM 
python ~/code/makewigglefromBAM-NH.py --- WT_G2_ORC_rep1-2-GSM424494/GSM424494.36mers.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes WT_G2_ORC_rep1-2-GSM424494/GSM424494.36mers.a.wig -notitle -RPM