python ~/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-all-sites.py ../2018-03-06-nanopore-data-from-February/dm6_nanopolish-methylation_reads_all.sorted.tsv.gz /oak/stanford/groups/akundaje/marinovg/various/2017-09-07-dSMF/31-BEAF32-GSE52887/Beaf-32-GSM1278639.25mers.unique.MACS-2.1.0_peaks.narrowPeak 0 narrowPeak 1 1000 1000 signal-around-all-sites-Beaf-32-GSM1278639.methylation_calls_all.additional_reads -minCov 0.75 -window 10 -unstranded