L196-L197-S2-dSMF-merged.Bismark_v0.19.0.bowtie2.clip.pbat.X1000.pe.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: single-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 11827688 lines in total Total number of methylation call strings processed: 11827688 Final Cytosine Methylation Report ================================= Total number of C's analysed: 143717368 Total methylated C's in CpG context: 2640567 Total methylated C's in CHG context: 704697 Total methylated C's in CHH context: 1590655 Total C to T conversions in CpG context: 29684306 Total C to T conversions in CHG context: 30197036 Total C to T conversions in CHH context: 78900107 C methylated in CpG context: 8.2% C methylated in non-CpG context: 2.1%