#	C methylated in CHG context:	C methylated in CHH context:	C methylated in CpG context:	C methylated in Unknown context (CN or CHN):	CT/CT:	CT/GA:	GA/CT:	GA/GA:	Mapping efficiency:	Number of alignments to (merely theoretical) complementary strands being rejected in total:	Number of alignments with a unique best hit from the different alignments:	Sequences analysed in total:	Sequences did not map uniquely:	Sequences which were discarded because genomic sequence could not be extracted:	Sequences with no alignments under any condition:	Total methylated C's in CHG context:	Total methylated C's in CHH context:	Total methylated C's in CpG context:	Total methylated C's in Unknown context:	Total number of C's analysed:	Total unmethylated C's in CHG context:	Total unmethylated C's in CHH context:	Total unmethylated C's in CpG context:	Total unmethylated C's in Unknown context:
bowtie1.drorep	0.1%	0.1%	0.1%	nan	787924	817186	0	0	7.6%	0	1605110	21252576	77934	944	19569532	3735	10853	4116	nan	18495755	3880824	10427595	4168632	nan
bowtie1.drorep.pbat	65.5%	52.7%	42.8%	nan	0	0	55159	54090	0.5%	nan	109249	21252576	122365	198	21020962	6401	256212	4995	nan	507426	3366	229764	6688	nan
bowtie1.drorep.pbat.untrimmed	56.8%	61.9%	54.0%	nan	0	0	13933	10892	0.1%	nan	24825	22010452	4564	51	21981063	6814	66230	3609	nan	125726	5191	40809	3073	nan
bowtie1.drorep.untrimmed	0.3%	0.4%	0.3%	nan	495775	555770	0	0	4.8%	0	1051545	22010452	18875	605	20940032	8874	37855	9532	nan	16839640	3527185	9469528	3786666	nan
bowtie2.dm6	0.1%	0.1%	0.1%	0.3%	4042538	4101321	0	0	37.0%	0	8144028	22010452	2521955	169	11344469	30801	85008	39330	138	132932778	28588480	73456781	30732378	53011
bowtie2.dm6.pbat.untrimmed	86.4%	48.2%	82.2%	81.6%	0	0	19248	31205	0.2%	nan	50457	22010452	663111	4	21296884	2794	540966	3732	407	1129448	438	580708	810	92
bowtie2.dm6.pbat_trimmed	80.1%	68.1%	78.1%	55.6%	0	0	94440	79843	0.8%	nan	174285	21252576	1007732	2	20070559	16555	744995	12331	207	1131219	4123	349750	3465	165
bowtie2.dm6_trimmed	0.1%	0.1%	0.1%	0.1%	5765025	5836738	0	0	54.6%	0	11601930	21252576	3809855	167	5840791	28250	73538	31607	28	136552942	29255719	75790338	31373490	21089
bowtie2.drorep.pbat	85.3%	44.9%	84.2%	54.9%	0	0	9317	47354	0.3%	nan	56698	18596004	215455	27	18323851	1491	177627	1260	28	399095	256	218224	237	23
bowtie2.drorep.pbat.untrimmed	94.7%	99.2%	93.7%	100.0%	0	0	913	131	0.0%	nan	1044	22010452	33	0	22009375	432	20802	387	4	21830	24	159	26	0