Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=L99-CC7_MF2.2b-2017_11_29-rep1-Input_old_protocol_new_kit.1x36mers.Aiptasia_pallida-1.0.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=L99-CC7_MF2.2b-2017_11_29-rep1-Input_old_protocol_new_kit.1x36mers.Aiptasia_pallida-1.0.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=L100-CC7_MF2.2b-2017_11_29-rep1-Input_new_protocol_new_kit.1x36mers.Aiptasia_pallida-1.0.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=L100-CC7_MF2.2b-2017_11_29-rep1-Input_new_protocol_new_kit.1x36mers.Aiptasia_pallida-1.0.unique.QC