python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L6097-HEK_SOX2_1_SOX_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L6097-HEK_SOX2_1_SOX_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L6098-HEK_SOX2_1_SOX_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L6098-HEK_SOX2_1_SOX_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L6099-HEK_SOX2_0.75_SOX_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L6099-HEK_SOX2_0.75_SOX_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L6100-HEK_SOX2_0.5_SOX_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L6100-HEK_SOX2_0.5_SOX_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L6101-HEK_SOX2_0.5_SOX_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L6101-HEK_SOX2_0.5_SOX_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L6102-HEK_SOX2_0.25_SOX_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L6102-HEK_SOX2_0.25_SOX_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L6103-HEK_SOX2_0.25_SOX_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L6103-HEK_SOX2_0.25_SOX_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L6104-HEK_SOX2_0.05_SOX_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L6104-HEK_SOX2_0.05_SOX_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L6105-HEK_SOX2_0.05_SOX_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L6105-HEK_SOX2_0.05_SOX_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L6106-HEK_IRF4_1_IRF4_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L6106-HEK_IRF4_1_IRF4_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L6107-HEK_IRF4_1_IRF4_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L6107-HEK_IRF4_1_IRF4_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L6108-HEK_IRF4_0.75_IRF4_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L6108-HEK_IRF4_0.75_IRF4_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L6109-HEK_IRF4_0.5_IRF4_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L6109-HEK_IRF4_0.5_IRF4_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L6110-HEK_IRF4_0.5_IRF4_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L6110-HEK_IRF4_0.5_IRF4_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L6111-HEK_IRF4_0.25_IRF4_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L6111-HEK_IRF4_0.25_IRF4_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L6112-HEK_IRF4_0.25_IRF4_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L6112-HEK_IRF4_0.25_IRF4_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L6113-HEK_IRF4_0.05_IRF4_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L6113-HEK_IRF4_0.05_IRF4_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L6114-HEK_IRF4_0.05_IRF4_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L6114-HEK_IRF4_0.05_IRF4_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L6115-HEK_ALX4_1_ALX4-FLAG_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L6115-HEK_ALX4_1_ALX4-FLAG_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L6116-HEK_ALX4_1_ALX4-FLAG_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L6116-HEK_ALX4_1_ALX4-FLAG_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L6117-HEK_ALX4_0.75_ALX4-FLAG_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L6117-HEK_ALX4_0.75_ALX4-FLAG_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L6118-HEK_ALX4_0.5_ALX4-FLAG_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L6118-HEK_ALX4_0.5_ALX4-FLAG_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L6119-HEK_ALX4_0.5_ALX4-FLAG_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L6119-HEK_ALX4_0.5_ALX4-FLAG_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L6120-HEK_ALX4_0.5_ALX4-FLAG_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L6120-HEK_ALX4_0.5_ALX4-FLAG_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L6121-HEK_ALX4_0.25_ALX4-FLAG_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L6121-HEK_ALX4_0.25_ALX4-FLAG_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L6122-HEK_ALX4_0.25_ALX4-FLAG_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L6122-HEK_ALX4_0.25_ALX4-FLAG_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L6123-HEK_ALX4_0.05_ALX4-FLAG_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L6123-HEK_ALX4_0.05_ALX4-FLAG_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L6124-HEK_ALX4_0.05_ALX4-FLAG_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L6124-HEK_ALX4_0.05_ALX4-FLAG_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize