## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[AMC6.2x36mers.hg38-male.unique.bam] OUTPUT=AMC6.2x36mers.hg38-male.unique.dedup.bam METRICS_FILE=AMC6.2x36mers.hg38-male.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Dec 01 21:32:29 PST 2025

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	2051474	1051256	0	27555	12447	0.013432	136916486

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.006059
2.0	1.997156
3.0	2.973513
4.0	3.935351
5.0	4.882884
6.0	5.816326
7.0	6.735886
8.0	7.641771
9.0	8.534184
10.0	9.413325
11.0	10.279391
12.0	11.132578
13.0	11.973076
14.0	12.801075
15.0	13.61676
16.0	14.420314
17.0	15.211918
18.0	15.99175
19.0	16.759984
20.0	17.516793
21.0	18.262348
22.0	18.996814
23.0	19.720358
24.0	20.433141
25.0	21.135324
26.0	21.827065
27.0	22.508518
28.0	23.179837
29.0	23.841172
30.0	24.492672
31.0	25.134483
32.0	25.766749
33.0	26.389612
34.0	27.003213
35.0	27.607688
36.0	28.203173
37.0	28.789802
38.0	29.367708
39.0	29.937019
40.0	30.497863
41.0	31.050367
42.0	31.594653
43.0	32.130846
44.0	32.659064
45.0	33.179427
46.0	33.692051
47.0	34.197052
48.0	34.694542
49.0	35.184634
50.0	35.667437
51.0	36.14306
52.0	36.61161
53.0	37.073192
54.0	37.527909
55.0	37.975864
56.0	38.417157
57.0	38.851887
58.0	39.280152
59.0	39.702048
60.0	40.11767
61.0	40.52711
62.0	40.930462
63.0	41.327815
64.0	41.719259
65.0	42.104881
66.0	42.484769
67.0	42.859006
68.0	43.227679
69.0	43.590868
70.0	43.948657
71.0	44.301124
72.0	44.648349
73.0	44.990411
74.0	45.327386
75.0	45.659349
76.0	45.986376
77.0	46.308539
78.0	46.625911
79.0	46.938563
80.0	47.246565
81.0	47.549987
82.0	47.848896
83.0	48.14336
84.0	48.433445
85.0	48.719216
86.0	49.000737
87.0	49.278071
88.0	49.551281
89.0	49.820428
90.0	50.085572
91.0	50.346773
92.0	50.60409
93.0	50.857579
94.0	51.107299
95.0	51.353305
96.0	51.595653
97.0	51.834397
98.0	52.069589
99.0	52.301285
100.0	52.529534