## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[AMC5.2x36mers.hg38-male.unique.bam] OUTPUT=AMC5.2x36mers.hg38-male.unique.dedup.bam METRICS_FILE=AMC5.2x36mers.hg38-male.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Dec 01 21:32:28 PST 2025

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	1718615	901038	0	25045	10983	0.014573	103113941

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.006378
2.0	1.996122
3.0	2.969506
4.0	3.926802
5.0	4.868274
6.0	5.794184
7.0	6.70479
8.0	7.600345
9.0	8.481097
10.0	9.347291
11.0	10.199168
12.0	11.036964
13.0	11.860912
14.0	12.671241
15.0	13.468176
16.0	14.251939
17.0	15.022746
18.0	15.780814
19.0	16.52635
20.0	17.259564
21.0	17.980659
22.0	18.689835
23.0	19.387288
24.0	20.073214
25.0	20.747802
26.0	21.411239
27.0	22.063711
28.0	22.705397
29.0	23.336478
30.0	23.957127
31.0	24.567518
32.0	25.167819
33.0	25.758198
34.0	26.338818
35.0	26.909842
36.0	27.471427
37.0	28.02373
38.0	28.566903
39.0	29.101099
40.0	29.626464
41.0	30.143146
42.0	30.651288
43.0	31.151031
44.0	31.642513
45.0	32.125872
46.0	32.601241
47.0	33.068753
48.0	33.528537
49.0	33.980721
50.0	34.425432
51.0	34.862792
52.0	35.292922
53.0	35.715943
54.0	36.131972
55.0	36.541124
56.0	36.943514
57.0	37.339252
58.0	37.728449
59.0	38.111213
60.0	38.487651
61.0	38.857866
62.0	39.221962
63.0	39.58004
64.0	39.932199
65.0	40.278537
66.0	40.619151
67.0	40.954134
68.0	41.283581
69.0	41.607582
70.0	41.926228
71.0	42.239607
72.0	42.547806
73.0	42.850911
74.0	43.149006
75.0	43.442174
76.0	43.730495
77.0	44.014052
78.0	44.292921
79.0	44.567181
80.0	44.836907
81.0	45.102176
82.0	45.363059
83.0	45.619631
84.0	45.871961
85.0	46.120121
86.0	46.364179
87.0	46.604203
88.0	46.84026
89.0	47.072415
90.0	47.300732
91.0	47.525276
92.0	47.746108
93.0	47.96329
94.0	48.176882
95.0	48.386944
96.0	48.593534
97.0	48.796709
98.0	48.996525
99.0	49.193039
100.0	49.386305