## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[AMC4.2x36mers.hg38-male.unique.bam] OUTPUT=AMC4.2x36mers.hg38-male.unique.dedup.bam METRICS_FILE=AMC4.2x36mers.hg38-male.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Dec 01 21:32:27 PST 2025

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	2272663	1194290	0	35153	14326	0.015468	121685343

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.006285
2.0	1.99395
3.0	2.96334
4.0	3.914793
5.0	4.848641
6.0	5.76521
7.0	6.66482
8.0	7.547784
9.0	8.41441
10.0	9.265001
11.0	10.099853
12.0	10.919257
13.0	11.7235
14.0	12.512862
15.0	13.287619
16.0	14.048039
17.0	14.79439
18.0	15.52693
19.0	16.245916
20.0	16.951599
21.0	17.644224
22.0	18.324034
23.0	18.991265
24.0	19.646149
25.0	20.288917
26.0	20.919791
27.0	21.538992
28.0	22.146735
29.0	22.743234
30.0	23.328695
31.0	23.903323
32.0	24.467319
33.0	25.020879
34.0	25.564197
35.0	26.097461
36.0	26.620859
37.0	27.134571
38.0	27.638779
39.0	28.133657
40.0	28.619378
41.0	29.096111
42.0	29.564024
43.0	30.023279
44.0	30.474035
45.0	30.916452
46.0	31.350682
47.0	31.776878
48.0	32.195188
49.0	32.605757
50.0	33.00873
51.0	33.404247
52.0	33.792445
53.0	34.17346
54.0	34.547425
55.0	34.914471
56.0	35.274725
57.0	35.628313
58.0	35.975359
59.0	36.315983
60.0	36.650305
61.0	36.97844
62.0	37.300504
63.0	37.616609
64.0	37.926865
65.0	38.23138
66.0	38.530261
67.0	38.823611
68.0	39.111533
69.0	39.394128
70.0	39.671494
71.0	39.943728
72.0	40.210925
73.0	40.473177
74.0	40.730577
75.0	40.983215
76.0	41.231177
77.0	41.474552
78.0	41.713424
79.0	41.947875
80.0	42.177988
81.0	42.403844
82.0	42.625521
83.0	42.843095
84.0	43.056644
85.0	43.266242
86.0	43.471961
87.0	43.673874
88.0	43.872051
89.0	44.066561
90.0	44.257472
91.0	44.44485
92.0	44.628762
93.0	44.80927
94.0	44.986438
95.0	45.160329
96.0	45.331001
97.0	45.498516
98.0	45.662931
99.0	45.824304
100.0	45.982691