## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[AMC3.2x36mers.hg38-male.unique.bam] OUTPUT=AMC3.2x36mers.hg38-male.unique.dedup.bam METRICS_FILE=AMC3.2x36mers.hg38-male.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Dec 01 21:32:26 PST 2025

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	522606	417952	0	7264	3285	0.0139	33716379

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.006277
2.0	1.997076
3.0	2.972637
4.0	3.933193
5.0	4.878975
6.0	5.81021
7.0	6.727122
8.0	7.629932
9.0	8.518856
10.0	9.394108
11.0	10.255898
12.0	11.104434
13.0	11.939918
14.0	12.762552
15.0	13.572533
16.0	14.370057
17.0	15.155314
18.0	15.928494
19.0	16.689781
20.0	17.43936
21.0	18.17741
22.0	18.904108
23.0	19.619629
24.0	20.324144
25.0	21.017825
26.0	21.700835
27.0	22.373341
28.0	23.035503
29.0	23.687481
30.0	24.329431
31.0	24.961508
32.0	25.583863
33.0	26.196645
34.0	26.800003
35.0	27.394081
36.0	27.979021
37.0	28.554965
38.0	29.12205
39.0	29.680414
40.0	30.230189
41.0	30.771509
42.0	31.304503
43.0	31.829299
44.0	32.346023
45.0	32.8548
46.0	33.355752
47.0	33.848998
48.0	34.334658
49.0	34.812849
50.0	35.283685
51.0	35.747279
52.0	36.203742
53.0	36.653185
54.0	37.095716
55.0	37.53144
56.0	37.960462
57.0	38.382886
58.0	38.798812
59.0	39.208342
60.0	39.611572
61.0	40.008601
62.0	40.399523
63.0	40.784433
64.0	41.163422
65.0	41.536583
66.0	41.904004
67.0	42.265773
68.0	42.621979
69.0	42.972706
70.0	43.318038
71.0	43.65806
72.0	43.992851
73.0	44.322493
74.0	44.647065
75.0	44.966645
76.0	45.28131
77.0	45.591135
78.0	45.896195
79.0	46.196563
80.0	46.49231
81.0	46.78351
82.0	47.07023
83.0	47.35254
84.0	47.630509
85.0	47.904202
86.0	48.173685
87.0	48.439024
88.0	48.700281
89.0	48.957521
90.0	49.210803
91.0	49.460191
92.0	49.705742
93.0	49.947517
94.0	50.185573
95.0	50.419968
96.0	50.650757
97.0	50.877997
98.0	51.101742
99.0	51.322045
100.0	51.538961