## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[AMC2.2x36mers.hg38-male.unique.bam] OUTPUT=AMC2.2x36mers.hg38-male.unique.dedup.bam METRICS_FILE=AMC2.2x36mers.hg38-male.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Dec 01 21:32:26 PST 2025

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	359373	266970	0	4908	2276	0.013657	24105415

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.006326
2.0	1.997761
3.0	2.974525
4.0	3.936835
5.0	4.884904
6.0	5.818945
7.0	6.739163
8.0	7.645764
9.0	8.53895
10.0	9.418919
11.0	10.285865
12.0	11.139983
13.0	11.981462
14.0	12.810489
15.0	13.627248
16.0	14.431921
17.0	15.224686
18.0	16.00572
19.0	16.775197
20.0	17.533287
21.0	18.280159
22.0	19.015979
23.0	19.74091
24.0	20.455114
25.0	21.158749
26.0	21.851972
27.0	22.534937
28.0	23.207795
29.0	23.870697
30.0	24.523789
31.0	25.167217
32.0	25.801123
33.0	26.425649
34.0	27.040934
35.0	27.647113
36.0	28.244323
37.0	28.832695
38.0	29.41236
39.0	29.983448
40.0	30.546085
41.0	31.100395
42.0	31.646504
43.0	32.184531
44.0	32.714597
45.0	33.236818
46.0	33.751312
47.0	34.258193
48.0	34.757573
49.0	35.249563
50.0	35.734273
51.0	36.21181
52.0	36.682281
53.0	37.145789
54.0	37.602439
55.0	38.052331
56.0	38.495566
57.0	38.932242
58.0	39.362457
59.0	39.786305
60.0	40.20388
61.0	40.615277
62.0	41.020586
63.0	41.419897
64.0	41.8133
65.0	42.200881
66.0	42.582726
67.0	42.958921
68.0	43.329549
69.0	43.694693
70.0	44.054433
71.0	44.40885
72.0	44.758022
73.0	45.102028
74.0	45.440943
75.0	45.774842
76.0	46.103801
77.0	46.427892
78.0	46.747187
79.0	47.061757
80.0	47.371672
81.0	47.677001
82.0	47.977812
83.0	48.274171
84.0	48.566146
85.0	48.853799
86.0	49.137196
87.0	49.416399
88.0	49.691471
89.0	49.962472
90.0	50.229463
91.0	50.492503
92.0	50.75165
93.0	51.006963
94.0	51.258498
95.0	51.50631
96.0	51.750456
97.0	51.990988
98.0	52.227962
99.0	52.461428
100.0	52.69144