## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[AMC1.2x36mers.hg38-male.unique.bam] OUTPUT=AMC1.2x36mers.hg38-male.unique.dedup.bam METRICS_FILE=AMC1.2x36mers.hg38-male.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Dec 01 21:32:25 PST 2025

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	544406	381254	0	6411	3046	0.011776	43366260

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.005591
2.0	1.998638
3.0	2.979296
4.0	3.94772
5.0	4.904062
6.0	5.848474
7.0	6.781105
8.0	7.7021
9.0	8.611606
10.0	9.509766
11.0	10.396721
12.0	11.272611
13.0	12.137574
14.0	12.991747
15.0	13.835264
16.0	14.668257
17.0	15.490859
18.0	16.303199
19.0	17.105404
20.0	17.897602
21.0	18.679917
22.0	19.452472
23.0	20.21539
24.0	20.96879
25.0	21.712792
26.0	22.447511
27.0	23.173065
28.0	23.889568
29.0	24.597132
30.0	25.295869
31.0	25.985889
32.0	26.667301
33.0	27.340212
34.0	28.004729
35.0	28.660955
36.0	29.308995
37.0	29.948951
38.0	30.580923
39.0	31.205011
40.0	31.821313
41.0	32.429927
42.0	33.030948
43.0	33.624471
44.0	34.21059
45.0	34.789397
46.0	35.360984
47.0	35.92544
48.0	36.482854
49.0	37.033314
50.0	37.576907
51.0	38.113718
52.0	38.643833
53.0	39.167335
54.0	39.684305
55.0	40.194827
56.0	40.698979
57.0	41.196842
58.0	41.688494
59.0	42.174013
60.0	42.653475
61.0	43.126955
62.0	43.594529
63.0	44.056269
64.0	44.51225
65.0	44.962541
66.0	45.407216
67.0	45.846342
68.0	46.279991
69.0	46.70823
70.0	47.131126
71.0	47.548747
72.0	47.961158
73.0	48.368424
74.0	48.770609
75.0	49.167777
76.0	49.55999
77.0	49.94731
78.0	50.329798
79.0	50.707515
80.0	51.08052
81.0	51.448871
82.0	51.812627
83.0	52.171845
84.0	52.526582
85.0	52.876893
86.0	53.222834
87.0	53.564459
88.0	53.901823
89.0	54.234978
90.0	54.563977
91.0	54.888871
92.0	55.209712
93.0	55.526551
94.0	55.839437
95.0	56.14842
96.0	56.453548
97.0	56.754869
98.0	57.052432
99.0	57.346282
100.0	57.636467