## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[KO-N4371-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.sort.bam] OUTPUT=KO-N4371-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam METRICS_FILE=KO-N4371-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Apr 14 14:59:15 PDT 2018

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	13868515	0	0	1855648	1452270	0.133803	186928613

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.112685
2.0	2.145807
3.0	3.105054
4.0	3.995709
5.0	4.822677
6.0	5.590511
7.0	6.303441
8.0	6.965392
9.0	7.580009
10.0	8.150677
11.0	8.680539
12.0	9.172513
13.0	9.629308
14.0	10.053438
15.0	10.447241
16.0	10.812885
17.0	11.152383
18.0	11.467605
19.0	11.760286
20.0	12.032039
21.0	12.28436
22.0	12.518638
23.0	12.736164
24.0	12.938136
25.0	13.125665
26.0	13.299785
27.0	13.461454
28.0	13.611563
29.0	13.750938
30.0	13.880347
31.0	14.000503
32.0	14.112066
33.0	14.215653
34.0	14.311832
35.0	14.401133
36.0	14.48405
37.0	14.561037
38.0	14.632519
39.0	14.698889
40.0	14.760514
41.0	14.817732
42.0	14.870859
43.0	14.920187
44.0	14.965987
45.0	15.008513
46.0	15.047998
47.0	15.084659
48.0	15.118699
49.0	15.150304
50.0	15.17965
51.0	15.206898
52.0	15.232197
53.0	15.255687
54.0	15.277497
55.0	15.297748
56.0	15.31655
57.0	15.334008
58.0	15.350218
59.0	15.365269
60.0	15.379243
61.0	15.392219
62.0	15.404266
63.0	15.415452
64.0	15.425838
65.0	15.435481
66.0	15.444435
67.0	15.452749
68.0	15.460468
69.0	15.467635
70.0	15.47429
71.0	15.480469
72.0	15.486206
73.0	15.491532
74.0	15.496478
75.0	15.501071
76.0	15.505334
77.0	15.509293
78.0	15.512969
79.0	15.516382
80.0	15.519551
81.0	15.522493
82.0	15.525225
83.0	15.527762
84.0	15.530117
85.0	15.532304
86.0	15.534335
87.0	15.53622
88.0	15.53797
89.0	15.539596
90.0	15.541105
91.0	15.542506
92.0	15.543807
93.0	15.545015
94.0	15.546136
95.0	15.547178
96.0	15.548144
97.0	15.549042
98.0	15.549876
99.0	15.55065
100.0	15.551368